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Glabska H, Chintaluri C, Wójcik DK (2017) Collection of Simulated Data from a Thalamocortical Network Model. Neuroinformatics 15:87-99 [PubMed]

   Collection of simulated data from a thalamocortical network model (Glabska, Chintaluri, Wojcik 2017)

References and models cited by this paper

References and models that cite this paper

Buzsáki G, Anastassiou CA, Koch C (2012) The origin of extracellular fields and currents--EEG, ECoG, LFP and spikes. Nat Rev Neurosci 13:407-20 [Journal] [PubMed]
Cohen S, Hindmarsh A (1996) CVODE, a stiff-nonstiff ODE solver in C. Comput Physics 10:138-143
Denker M,Einevoll G,Franke F,Grun S,Hagen E,Kerr J,Nawrot M,Ness TB,Ritz R,Smith L,Wachtler T,Wójcik D (2013) Report from the 1st INCF workshop on validation of analysis methods, Stockholm, 2012. Technical report, INCF. Available at http:// archive.incf.org/documents/documents/workshop-reports/incf-workshop-on-validation-of-analysis-methods/at_download/2013_validation_report_interative.pdf
Di S, Baumgartner C, Barth DS (1990) Laminar analysis of extracellular field potentials in rat vibrissa/barrel cortex. J Neurophysiol 63:832-40 [Journal] [PubMed]
Einevoll GT, Franke F, Hagen E, Pouzat C, Harris KD (2012) Towards reliable spike-train recordings from thousands of neurons with multielectrodes. Curr Opin Neurobiol 22:11-7 [Journal] [PubMed]
Einevoll GT, Kayser C, Logothetis NK, Panzeri S (2013) Modelling and analysis of local field potentials for studying the function of cortical circuits. Nat Rev Neurosci 14:770-85 [Journal] [PubMed]
Einevoll GT, Pettersen KH, Devor A, Ulbert I, Halgren E, Dale AM (2007) Laminar population analysis: estimating firing rates and evoked synaptic activity from multielectrode recordings in rat barrel cortex. J Neurophysiol 97:2174-90 [Journal] [PubMed]
Garcia S, Guarino D, Jaillet F, Jennings T, Pröpper R, Rautenberg PL, Rodgers CC, Sobolev A, Wachtler T, Yger P, Davison AP (2014) Neo: an object model for handling electrophysiology data in multiple formats. Front Neuroinform 8:10 [Journal] [PubMed]
Glabska H, Potworowski J, Leski S, Wójcik DK (2014) Independent components of neural activity carry information on individual populations. PLoS One 9:e105071 [Journal] [PubMed]
Glabska HT, Norheim E, Devor A, Dale AM, Einevoll GT, Wójcik DK (2016) Generalized Laminar Population Analysis (gLPA) for Interpretation of Multielectrode Data from Cortex. Front Neuroinform 10:1 [Journal] [PubMed]
Gleeson P, Crook S, Cannon RC, Hines ML, Billings GO, Farinella M, Morse TM, Davison AP, Ray S, Bhalla US, Barnes SR, Dimitrova YD, Silver RA (2010) NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail. PLoS Comput Biol 6:e1000815 [Journal] [PubMed]
Gleeson P,Ray S,Glabska H (2013) Traub's thalamocortical model known issues, Open Source Brain Hackathon in London. Online. Available at http://www.opensourcebrain.org/ projects/thalamocortical/wiki/Known_issues
Gold C, Henze DA, Koch C (2007) Using extracellular action potential recordings to constrain compartmental models. J Comput Neurosci 23:39-58 [Journal] [PubMed]
   Extracellular Action Potential Simulations (Gold et al 2007) [Model]
Gold C, Henze DA, Koch C, Buzsáki G (2006) On the origin of the extracellular action potential waveform: A modeling study. J Neurophysiol 95:3113-28 [Journal] [PubMed]
   Extracellular Action Potential Simulations (Gold et al 2007) [Model]
Gomes JM, Bédard C, Valtcheva S, Nelson M, Khokhlova V, Pouget P, Venance L, Bal T, Destexhe A (2016) Intracellular Impedance Measurements Reveal Non-ohmic Properties of the Extracellular Medium around Neurons. Biophys J 110:234-46 [Journal] [PubMed]
Harris KD, Henze DA, Csicsvari J, Hirase H, Buzsáki G (2000) Accuracy of tetrode spike separation as determined by simultaneous intracellular and extracellular measurements. J Neurophysiol 84:401-14 [Journal] [PubMed]
Hines ML, Carnevale NT (1997) The NEURON simulation environment. Neural Comput 9:1179-209 [PubMed]
Holt GR, Koch C (1999) Electrical interactions via the extracellular potential near cell bodies. J Comput Neurosci 6:169-84 [PubMed]
   Extracellular Action Potential Simulations (Gold et al 2007) [Model]
Hunt MJ, Falinska M, Leski S, Wójcik DK, Kasicki S (2011) Differential effects produced by ketamine on oscillatory activity recorded in the rat hippocampus, dorsal striatum and nucleus accumbens. J Psychopharmacol 25:808-21 [Journal] [PubMed]
Leski S, Kublik E, Swiejkowski DA, Wróbel A, Wójcik DK (2010) Extracting functional components of neural dynamics with Independent Component Analysis and inverse Current Source Density. J Comput Neurosci 29:459-73 [Journal] [PubMed]
Leski S, Lindén H, Tetzlaff T, Pettersen KH, Einevoll GT (2013) Frequency dependence of signal power and spatial reach of the local field potential. PLoS Comput Biol 9:e1003137 [Journal] [PubMed]
Leski S, Pettersen KH, Tunstall B, Einevoll GT, Gigg J, Wójcik DK (2011) Inverse current source density method in two dimensions: inferring neural activation from multielectrode recordings. Neuroinformatics 9:401-25 [Journal] [PubMed]
Leski S, Wójcik DK, Tereszczuk J, Swiejkowski DA, Kublik E, Wróbel A (2007) Inverse current-source density method in 3D: reconstruction fidelity, boundary effects, and influence of distant sources. Neuroinformatics 5:207-22 [Journal] [PubMed]
Lindén H, Hagen E, Leski S, Norheim ES, Pettersen KH, Einevoll GT (2013) LFPy: a tool for biophysical simulation of extracellular potentials generated by detailed model neurons. Front Neuroinform 7:41 [Journal] [PubMed]
Makarov VA, Makarova J, Herreras O (2010) Disentanglement of local field potential sources by independent component analysis. J Comput Neurosci 29:445-57 [Journal] [PubMed]
Mitzdorf U (1985) Current source-density method and application in cat cerebral cortex: investigation of evoked potentials and EEG phenomena. Physiol Rev 65:37-100 [Journal] [PubMed]
Ness TV, Chintaluri C, Potworowski J, Leski S, Glabska H, Wójcik DK, Einevoll GT (2015) Modelling and Analysis of Electrical Potentials Recorded in Microelectrode Arrays (MEAs). Neuroinformatics 13:403-26 [Journal] [PubMed]
Neto JP, Lopes G, Frazão J, Nogueira J, Lacerda P, Baião P, Aarts A, Andrei A, Musa S, Fortunato E, Barquinha P, Kampff AR (2016) Validating silicon polytrodes with paired juxtacellular recordings: method and dataset. J Neurophysiol 116:892-903 [Journal] [PubMed]
Nunez PL,Srinivasan R (2005) Electric fields of the brain: the neurophysics of eEG
Parasuram H, Nair B, D'Angelo E, Hines M, Naldi G, Diwakar S (2016) Computational Modeling of Single Neuron Extracellular Electric Potentials and Network Local Field Potentials using LFPsim. Front Comput Neurosci 10:65 [Journal] [PubMed]
   Modeling single neuron LFPs and extracellular potentials with LFPsim (Parasuram et al. 2016) [Model]
Pettersen KH, Devor A, Ulbert I, Dale AM, Einevoll GT (2006) Current-source density estimation based on inversion of electrostatic forward solution: effects of finite extent of neuronal activity and conductivity discontinuities. J Neurosci Methods 154:116-33 [Journal] [PubMed]
Potworowski J, Jakuczun W, L?ski S, Wójcik D (2012) Kernel current source density method. Neural Comput 24:541-75 [Journal] [PubMed]
Quiroga RQ, Nadasdy Z, Ben-Shaul Y (2004) Unsupervised spike detection and sorting with wavelets and superparamagnetic clustering. Neural Comput 16:1661-87 [Journal] [PubMed]
Ray S, Chintaluri C, Bhalla US, Wójcik DK (2016) NSDF: Neuroscience Simulation Data Format. Neuroinformatics 14:147-67 [Journal] [PubMed]
Reimann MW, Anastassiou CA, Perin R, Hill SL, Markram H, Koch C (2013) A biophysically detailed model of neocortical local field potentials predicts the critical role of active membrane currents. Neuron 79:375-90 [Journal] [PubMed]
Traub RD (2003) Fast Oscillations and Epilepsy. Epilepsy Curr 3:77-79 [Journal] [PubMed]
Tsafnat G (2008) The field representation language. J Biomed Inform 41:46-57 [Journal] [PubMed]
Wojcik DK (2015) Current source density (CSD) analysis Encyclopedia of computational neuroscience :915-922
Cserpán D, Meszéna D, Wittner L, Tóth K, Ulbert I, Somogyvári Z, Wójcik DK (2017) Revealing the distribution of transmembrane currents along the dendritic tree of a neuron from extracellular recordings. Elife [Journal] [PubMed]
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