Citation Relationships

Legends: Link to a Model Reference cited by multiple papers


Beining M, Mongiat LA, Schwarzacher SW, Cuntz H, Jedlicka P (2017) T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells eLife

  • Mature and young adult-born dentate granule cell models (T2N interface) (Beining et al. 2017)

  • GC model (Beining et al 2017)

References and models cited by this paper

References and models that cite this paper

Abraham WC (2008) Metaplasticity: tuning synapses and networks for plasticity. Nat Rev Neurosci 9:387 [Journal] [PubMed]
Abraham WC, Bear MF (1996) Metaplasticity: the plasticity of synaptic plasticity. Trends Neurosci 19:126-30 [PubMed]
Achard P, De Schutter E (2006) Complex parameter landscape for a complex neuron model. PLoS Comput Biol 2:e94 [Journal] [PubMed]
Aimone JB, Deng W, Gage FH (2010) Adult neurogenesis: integrating theories and separating functions. Trends Cogn Sci 14:325-37 [Journal] [PubMed]
Aller MI, Wisden W (2008) Changes in expression of some two-pore domain potassium channel genes (KCNK) in selected brain regions of developing mice. Neuroscience 151:1154-72 [Journal] [PubMed]
Almog M, Korngreen A (2016) Is realistic neuronal modeling realistic? J Neurophysiol 116:2180-2209 [Journal] [PubMed]
An WF, Bowlby MR, Betty M, Cao J, Ling HP, Mendoza G, Hinson JW, Mattsson KI, Strassle BW, Trimmer JS, Rhodes KJ (2000) Modulation of A-type potassium channels by a family of calcium sensors. Nature 403:553-6 [Journal] [PubMed]
Antonucci DE, Lim ST, Vassanelli S, Trimmer JS (2001) Dynamic localization and clustering of dendritic Kv2.1 voltage-dependent potassium channels in developing hippocampal neurons. Neuroscience 108:69-81 [PubMed]
Aradi I, Holmes WR (1999) Role of multiple calcium and calcium-dependent conductances in regulation of hippocampal dentate granule cell excitability. J Comput Neurosci 6:215-35 [PubMed]
  • Dentate gyrus granule cell: calcium and calcium-dependent conductances (Aradi and Holmes 1999) [Model]
Ascoli GA, Donohue DE, Halavi M (2007) NeuroMorpho.Org: a central resource for neuronal morphologies. J Neurosci 27:9247-51 [Journal] [PubMed]
Bähring R, Boland LM, Varghese A, Gebauer M, Pongs O (2001) Kinetic analysis of open- and closed-state inactivation transitions in human Kv4.2 A-type potassium channels. J Physiol 535:65-81 [PubMed]
Ballesteros-Merino C, Watanabe M, Shigemoto R, Fukazawa Y, Adelman JP, Luján R (2014) Differential subcellular localization of SK3-containing channels in the hippocampus. Eur J Neurosci 39:883-92 [Journal] [PubMed]
Banci L, Brancaccio D, Ciofi-Baffoni S, Del Conte R, Gadepalli R, Mikolajczyk M, Neri S, Piccioli M, Winkelmann J (2014) [2Fe-2S] cluster transfer in iron-sulfur protein biogenesis. Proc Natl Acad Sci U S A 111:6203-8 [Journal] [PubMed]
Barghaan J, Tozakidou M, Ehmke H, Bähring R (2008) Role of N-terminal domain and accessory subunits in controlling deactivation-inactivation coupling of Kv4.2 channels. Biophys J 94:1276-94 [Journal] [PubMed]
Beining M, Jungenitz T, Radic T, Deller T, Cuntz H, Jedlicka P, Schwarzacher SW (2017) Adult-born dentate granule cells show a critical period of dendritic reorganization and are distinct from developmentally born cells. Brain Struct Funct 222:1427-1446 [Journal] [PubMed]
Bell DC, Butcher AJ, Berrow NS, Page KM, Brust PF, Nesterova A, Stauderman KA, Seabrook GR, Nürnberg B, Dolphin AC (2001) Biophysical properties, pharmacology, and modulation of human, neuronal L-type (alpha(1D), Ca(V)1.3) voltage-dependent calcium currents. J Neurophysiol 85:816-27 [Journal] [PubMed]
Bozelos P, Stefanou SS, Bouloukakis G, Melachrinos C, Poirazi P (2015) REMOD: A Tool for Analyzing and Remodeling the Dendritic Architecture of Neural Cells. Front Neuroanat 9:156 [Journal] [PubMed]
Brenner R, Chen QH, Vilaythong A, Toney GM, Noebels JL, Aldrich RW (2005) BK channel beta4 subunit reduces dentate gyrus excitability and protects against temporal lobe seizures. Nat Neurosci 8:1752-9 [Journal] [PubMed]
Brunel N, Hakim V, Richardson MJ (2014) Single neuron dynamics and computation. Curr Opin Neurobiol 25:149-55 [Journal] [PubMed]
Burgess DE, Crawford O, Delisle BP, Satin J (2002) Mechanism of inactivation gating of human T-type (low-voltage activated) calcium channels. Biophys J 82:1894-906 [Journal] [PubMed]
Chang SY, Zagha E, Kwon ES, Ozaita A, Bobik M, Martone ME, Ellisman MH, Heintz N, Rudy B (2007) Distribution of Kv3.3 potassium channel subunits in distinct neuronal populations of mouse brain. J Comp Neurol 502:953-72 [Journal] [PubMed]
Christie MJ, Adelman JP, Douglass J, North RA (1989) Expression of a cloned rat brain potassium channel in Xenopus oocytes. Science 244:221-4 [PubMed]
Chung YH, Shin CM, Kim MJ, Shin DH, Yoo YB, Cha CI (2001) Spatial and temporal distribution of N-type Ca(2+) channels in gerbil global cerebral ischemia. Brain Res 902:294-300 [PubMed]
Cooper EC, Harrington E, Jan YN, Jan LY (2001) M channel KCNQ2 subunits are localized to key sites for control of neuronal network oscillations and synchronization in mouse brain. J Neurosci 21:9529-40 [PubMed]
Cooper EC, Milroy A, Jan YN, Jan LY, Lowenstein DH (1998) Presynaptic localization of Kv1.4-containing A-type potassium channels near excitatory synapses in the hippocampus. J Neurosci 18:965-74 [PubMed]
Craig PJ, Beattie RE, Folly EA, Banerjee MD, Reeves MB, Priestley JV, Carney SL, Sher E, Perez-Reyes E, Volsen SG (1999) Distribution of the voltage-dependent calcium channel alpha1G subunit mRNA and protein throughout the mature rat brain. Eur J Neurosci 11:2949-64 [PubMed]
Cuntz H, Forstner F, Borst A, Häusser M (2010) One rule to grow them all: a general theory of neuronal branching and its practical application. PLoS Comput Biol [Journal] [PubMed]
Cuntz H, Forstner F, Borst A, Häusser M (2011) The TREES toolbox--probing the basis of axonal and dendritic branching. Neuroinformatics 9:91-6 [Journal] [PubMed]
Cuntz H, Forstner F, Haag J, Borst A (2008) The morphological identity of insect dendrites. PLoS Comput Biol 4:e1000251 [Journal] [PubMed]
Cuntz H, Mathy A, Häusser M (2012) A scaling law derived from optimal dendritic wiring. Proc Natl Acad Sci U S A 109:11014-8 [Journal] [PubMed]
Day NC, Shaw PJ, McCormack AL, Craig PJ, Smith W, Beattie R, Williams TL, Ellis SB, Ince PG, Harpold MM, Lodge D, Volsen SG (1996) Distribution of alpha 1A, alpha 1B and alpha 1E voltage-dependent calcium channel subunits in the human hippocampus and parahippocampal gyrus. Neuroscience 71:1013-24 [PubMed]
de Schutter E (1994) Modelling the cerebellar Purkinje cell: experiments in computo. Prog Brain Res 102:427-41 [PubMed]
  • Cerebellar purkinje cell (De Schutter and Bower 1994) [Model]
Desai R, Kronengold J, Mei J, Forman SA, Kaczmarek LK (2008) Protein kinase C modulates inactivation of Kv3.3 channels. J Biol Chem 283:22283-94 [Journal] [PubMed]
Dey D, Eckle VS, Vitko I, Sullivan KA, Lasiecka ZM, Winckler B, Stornetta RL, Williamson JM, Kapur J, Perez-Reyes E (2014) A potassium leak channel silences hyperactive neurons and ameliorates status epilepticus. Epilepsia 55:203-13 [Journal] [PubMed]
Dhupia N, Rathour RK, Narayanan R (2014) Dendritic atrophy constricts functional maps in resonance and impedance properties of hippocampal model neurons. Front Cell Neurosci 8:456 [Journal] [PubMed]
Drion G, O'Leary T, Marder E (2015) Ion channel degeneracy enables robust and tunable neuronal firing rates. Proc Natl Acad Sci U S A 112:E5361-70 [Journal] [PubMed]
Druckmann S, Banitt Y, Gidon A, Schürmann F, Markram H, Segev I (2007) A novel multiple objective optimization framework for constraining conductance-based neuron models by experimental data. Front Neurosci 1:7-18 [Journal] [PubMed]
Espósito MS, Piatti VC, Laplagne DA, Morgenstern NA, Ferrari CC, Pitossi FJ, Schinder AF (2005) Neuronal differentiation in the adult hippocampus recapitulates embryonic development. J Neurosci 25:10074-86 [Journal] [PubMed]
Evans RC, Maniar YM, Blackwell KT (2013) Dynamic modulation of spike timing-dependent calcium influx during corticostriatal upstates. J Neurophysiol 110:1631-45 [Journal] [PubMed]
  • Calcium influx during striatal upstates (Evans et al. 2013) [Model]
Ferrante M, Migliore M, Ascoli GA (2009) Feed-forward inhibition as a buffer of the neuronal input-output relation. Proc Natl Acad Sci U S A 106:18004-9 [Journal] [PubMed]
  • Dentate Gyrus Feed-forward inhibition (Ferrante et al. 2009) [Model]
Foster WR, Ungar LH, Schwaber JS (1993) Significance of conductances in Hodgkin-Huxley models. J Neurophysiol 70:2502-18 [Journal] [PubMed]
Fox AP, Nowycky MC, Tsien RW (1987) Kinetic and pharmacological properties distinguishing three types of calcium currents in chick sensory neurones. J Physiol 394:149-72 [PubMed]
Gabriel A, Abdallah M, Yost CS, Winegar BD, Kindler CH (2002) Localization of the tandem pore domain K+ channel KCNK5 (TASK-2) in the rat central nervous system. Brain Res Mol Brain Res 98:153-63 [PubMed]
Geiger J, Weber YG, Landwehrmeyer B, Sommer C, Lerche H (2006) Immunohistochemical analysis of KCNQ3 potassium channels in mouse brain. Neurosci Lett 400:101-4 [Journal] [PubMed]
Gordon E, Roepke TK, Abbott GW (2006) Endogenous KCNE subunits govern Kv2.1 K+ channel activation kinetics in Xenopus oocyte studies. Biophys J 90:1223-31 [Journal] [PubMed]
Grosse G, Draguhn A, Höhne L, Tapp R, Veh RW, Ahnert-Hilger G (2000) Expression of Kv1 potassium channels in mouse hippocampal primary cultures: development and activity-dependent regulation. J Neurosci 20:1869-82 [PubMed]
Guan D, Horton LR, Armstrong WE, Foehring RC (2011) Postnatal development of A-type and Kv1- and Kv2-mediated potassium channel currents in neocortical pyramidal neurons. J Neurophysiol 105:2976-88 [Journal] [PubMed]
Günay C, Edgerton JR, Jaeger D (2008) Channel density distributions explain spiking variability in the globus pallidus: a combined physiology and computer simulation database approach. J Neurosci 28:7476-91 [Journal] [PubMed]
  • Globus pallidus multi-compartmental model neuron with realistic morphology (Gunay et al. 2008) [Model]
Hervieu GJ, Cluderay JE, Gray CW, Green PJ, Ranson JL, Randall AD, Meadows HJ (2001) Distribution and expression of TREK-1, a two-pore-domain potassium channel, in the adult rat CNS. Neuroscience 103:899-919 [PubMed]
Hines ML, Carnevale NT (2008) Translating network models to parallel hardware in NEURON. J Neurosci Methods 169:425-55 [Journal] [PubMed]
  • Translating network models to parallel hardware in NEURON (Hines and Carnevale 2008) [Model]
Hirschberg B, Maylie J, Adelman JP, Marrion NV (1998) Gating of recombinant small-conductance Ca-activated K+ channels by calcium. J Gen Physiol 111:565-81 [PubMed]
Hirschberg B, Maylie J, Adelman JP, Marrion NV (1999) Gating properties of single SK channels in hippocampal CA1 pyramidal neurons. Biophys J 77:1905-13 [Journal] [PubMed]
Huang X, Senatore A, Dawson TF, Quan Q, Spafford JD (2010) G-proteins modulate invertebrate synaptic calcium channel (LCav2) differently from the classical voltage-dependent regulation of mammalian Cav2.1 and Cav2.2 channels. J Exp Biol 213:2094-103 [Journal] [PubMed]
Jackson MB, Redman SJ (2003) Calcium dynamics, buffering, and buffer saturation in the boutons of dentate granule-cell axons in the hilus. J Neurosci 23:1612-21 [PubMed]
Jaffe DB, Wang B, Brenner R (2011) Shaping of action potentials by type I and type II large-conductance Ca²+-activated K+ channels. Neuroscience 192:205-18 [Journal] [PubMed]
  • Shaping of action potentials by different types of BK channels (Jaffe et al., 2011) [Model]
Jedlicka P, Benuskova L, Abraham WC (2015) A Voltage-Based STDP Rule Combined with Fast BCM-Like Metaplasticity Accounts for LTP and Concurrent "Heterosynaptic" LTD in the Dentate Gyrus In Vivo. PLoS Comput Biol 11:e1004588 [Journal] [PubMed]
  • Modeling dentate granule cells heterosynaptic plasticity using STDP-BCM rule (Jedlicka et al. 2015) [Model]
Jerng HH, Kunjilwar K, Pfaffinger PJ (2005) Multiprotein assembly of Kv4.2, KChIP3 and DPP10 produces ternary channel complexes with ISA-like properties. J Physiol 568:767-88 [Journal] [PubMed]
Jerng HH, Shahidullah M, Covarrubias M (1999) Inactivation gating of Kv4 potassium channels: molecular interactions involving the inner vestibule of the pore. J Gen Physiol 113:641-60 [PubMed]
Johnston ST, Shtrahman M, Parylak S, Gonçalves JT, Gage FH (2016) Paradox of pattern separation and adult neurogenesis: A dual role for new neurons balancing memory resolution and robustness. Neurobiol Learn Mem 129:60-8 [Journal] [PubMed]
Jones OT, Bernstein GM, Jones EJ, Jugloff DG, Law M, Wong W, Mills LR (1997) N-Type calcium channels in the developing rat hippocampus: subunit, complex, and regional expression. J Neurosci 17:6152-64 [PubMed]
Karschin C, Dissmann E, Stühmer W, Karschin A (1996) IRK(1-3) and GIRK(1-4) inwardly rectifying K+ channel mRNAs are differentially expressed in the adult rat brain. J Neurosci 16:3559-70 [PubMed]
Kaufmann WA, Kasugai Y, Ferraguti F, Storm JF (2010) Two distinct pools of large-conductance calcium-activated potassium channels in the somatic plasma membrane of central principal neurons. Neuroscience 169:974-86 [Journal] [PubMed]
Kaulin YA, De Santiago-Castillo JA, Rocha CA, Covarrubias M (2008) Mechanism of the modulation of Kv4:KChIP-1 channels by external K+. Biophys J 94:1241-51 [Journal] [PubMed]
Kerschensteiner D, Stocker M (1999) Heteromeric assembly of Kv2.1 with Kv9.3: effect on the state dependence of inactivation. Biophys J 77:248-57 [Journal] [PubMed]
Kim J, Nadal MS, Clemens AM, Baron M, Jung SC, Misumi Y, Rudy B, Hoffman DA (2008) Kv4 accessory protein DPPX (DPP6) is a critical regulator of membrane excitability in hippocampal CA1 pyramidal neurons. J Neurophysiol 100:1835-47 [Journal] [PubMed]
Kirchheim F, Tinnes S, Haas CA, Stegen M, Wolfart J (2013) Regulation of action potential delays via voltage-gated potassium Kv1.1 channels in dentate granule cells during hippocampal epilepsy. Front Cell Neurosci 7:248 [Journal] [PubMed]
Kleiman E, Jia H, Loguercio S, Su AI, Feeney AJ (2016) YY1 plays an essential role at all stages of B-cell differentiation. Proc Natl Acad Sci U S A 113:E3911-20 [Journal] [PubMed]
Klinger F, Gould G, Boehm S, Shapiro MS (2011) Distribution of M-channel subunits KCNQ2 and KCNQ3 in rat hippocampus. Neuroimage 58:761-9 [Journal] [PubMed]
Knaus HG, Schwarzer C, Koch RO, Eberhart A, Kaczorowski GJ, Glossmann H, Wunder F, Pongs O, Garcia ML, Sperk G (1996) Distribution of high-conductance Ca(2+)-activated K+ channels in rat brain: targeting to axons and nerve terminals. J Neurosci 16:955-63 [PubMed]
Knight BW (1972) Dynamics of encoding in a population of neurons. J Gen Physiol 59:734-66 [PubMed]
Koene RA, Tijms B, van Hees P, Postma F, de Ridder A, Ramakers GJ, van Pelt J, van Ooyen A (2009) NETMORPH: a framework for the stochastic generation of large scale neuronal networks with realistic neuron morphologies. Neuroinformatics 7:195-210 [Journal] [PubMed]
  • NETMORPH: creates NNs with realistic neuron morphologies (Koene et al. 2009, van Ooyen et al. 2014) [Model]
Koschak A, Reimer D, Huber I, Grabner M, Glossmann H, Engel J, Striessnig J (2001) alpha 1D (Cav1.3) subunits can form l-type Ca2+ channels activating at negative voltages. J Biol Chem 276:22100-6 [Journal] [PubMed]
Kramer AA, Ingraham NE, Sharpe EJ, Mynlieff M (2012) Levels of Ca(V)1.2 L-Type Ca(2+) Channels Peak in the First Two Weeks in Rat Hippocampus Whereas Ca(V)1.3 Channels Steadily Increase through Development. J Signal Transduct 2012:597214 [Journal] [PubMed]
Kramer JW, Post MA, Brown AM, Kirsch GE (1998) Modulation of potassium channel gating by coexpression of Kv2.1 with regulatory Kv5.1 or Kv6.1 alpha-subunits. Am J Physiol 274:C1501-10 [Journal] [PubMed]
Kress GJ, Dowling MJ, Eisenman LN, Mennerick S (2010) Axonal sodium channel distribution shapes the depolarized action potential threshold of dentate granule neurons. Hippocampus 20:558-71 [Journal] [PubMed]
Krueppel R, Remy S, Beck H (2011) Dendritic integration in hippocampal dentate granule cells. Neuron 71:512-28 [Journal] [PubMed]
Leitch B, Szostek A, Lin R, Shevtsova O (2009) Subcellular distribution of L-type calcium channel subtypes in rat hippocampal neurons. Neuroscience 164:641-57 [Journal] [PubMed]
Lesage F, Lauritzen I, Duprat F, Reyes R, Fink M, Heurteaux C, Lazdunski M (1997) The structure, function and distribution of the mouse TWIK-1 K+ channel. FEBS Lett 402:28-32 [PubMed]
Li L, Bischofberger J, Jonas P (2007) Differential gating and recruitment of P/Q-, N-, and R-type Ca2+ channels in hippocampal mossy fiber boutons. J Neurosci 27:13420-9 [Journal] [PubMed]
Liu YB, Lio PA, Pasternak JF, Trommer BL (1996) Developmental changes in membrane properties and postsynaptic currents of granule cells in rat dentate gyrus. J Neurophysiol 76:1074-88 [Journal] [PubMed]
Liu YC, Cheng JK, Lien CC (2014) Rapid dynamic changes of dendritic inhibition in the dentate gyrus by presynaptic activity patterns. J Neurosci 34:1344-57 [Journal] [PubMed]
MacDonald SH, Ruth P, Knaus HG, Shipston MJ (2006) Increased large conductance calcium-activated potassium (BK) channel expression accompanied by STREX variant downregulation in the developing mouse CNS. BMC Dev Biol 6:37 [Journal] [PubMed]
Maciaszek JL, Soh H, Walikonis RS, Tzingounis AV, Lykotrafitis G (2012) Topography of native SK channels revealed by force nanoscopy in living neurons. J Neurosci 32:11435-40 [Journal] [PubMed]
Maletic-Savatic M, Lenn NJ, Trimmer JS (1995) Differential spatiotemporal expression of K+ channel polypeptides in rat hippocampal neurons developing in situ and in vitro. J Neurosci 15:3840-51 [PubMed]
Marder E (2011) Variability, compensation, and modulation in neurons and circuits. Proc Natl Acad Sci U S A 108 Suppl 3:15542-8 [Journal] [PubMed]
Marder E, Goaillard JM (2006) Variability, compensation and homeostasis in neuron and network function. Nat Rev Neurosci 7:563-74 [Journal] [PubMed]
Markram H (2006) The blue brain project. Nat Rev Neurosci 7:153-60 [Journal] [PubMed]
Markram H (2012) The human brain project. Sci Am 306:50-5 [PubMed]
Markram H, Muller E, Ramaswamy S, Reimann MW, Abdellah M, Sanchez CA, Ailamaki A, Alonso-Nanclares L, Antille N, Arsever S, Kahou GA, Berger TK, Bilgili A, Buncic N, Chalimourda A, Chindemi G, Courcol JD, Delalondre F, Delattre V, Druckmann S, Dumusc R, Dynes J, Eilemann S, Gal E, Gevaert ME, Ghobril JP, Gidon A, Graham JW, Gupta A, Haenel V, Hay E, Heinis T, Hernando JB, Hines M, Kanari L, Keller D, Kenyon J, Khazen G, Kim Y, King JG, Kisvarday Z, Kumbhar P, Lasserre S, Le Bé JV, Magalhães BR, Merchán-Pérez A, Meystre J, Morrice BR, Muller J, Muñoz-Céspedes A, Muralidhar S, Muthurasa K, Nachbaur D, Newton TH, Nolte M, Ovcharenko A, Palacios J, Pastor L, Perin R, Ranjan R, Riachi I, Rodríguez JR, Riquelme JL, Rössert C, Sfyrakis K, Shi Y, Shillcock JC, Silberberg G, Silva R, Tauheed F, Telefont M, Toledo-Rodriguez M, Tränkler T, Van Geit W, Díaz JV, Walker R, Wang Y, Zaninetta SM (2015) Reconstruction and Simulation of Neocortical Microcircuitry. Cell 163:456-92 [Journal] [PubMed]
  • The neocortical microcircuit collaboration portal (Markram et al. 2015) [Model]
Martinello K, Huang Z, Lujan R, Tran B, Watanabe M, Cooper EC, Brown DA, Shah MM (2015) Cholinergic afferent stimulation induces axonal function plasticity in adult hippocampal granule cells. Neuron 85:346-63 [Journal] [PubMed]
Mateos-Aparicio P, Murphy R, Storm JF (2014) Complementary functions of SK and Kv7/M potassium channels in excitability control and synaptic integration in rat hippocampal dentate granule cells. J Physiol 592:669-93 [Journal] [PubMed]
  • Dentate granule cell: mAHP & sAHP; SK & Kv7/M channels (Mateos-Aparicio et al., 2014) [Model]
McCrossan ZA, Lewis A, Panaghie G, Jordan PN, Christini DJ, Lerner DJ, Abbott GW (2003) MinK-related peptide 2 modulates Kv2.1 and Kv3.1 potassium channels in mammalian brain. J Neurosci 23:8077-91 [PubMed]
McDougal RA, Morse TM, Carnevale T, Marenco L, Wang R, Migliore M, Miller PL, Shepherd GM, Hines ML (2017) Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience. J Comput Neurosci 42:1-10 [Journal] [PubMed]
McKay BE, McRory JE, Molineux ML, Hamid J, Snutch TP, Zamponi GW, Turner RW (2006) Ca(V)3 T-type calcium channel isoforms differentially distribute to somatic and dendritic compartments in rat central neurons. Eur J Neurosci 24:2581-94 [Journal] [PubMed]
Menegola M, Trimmer JS (2006) Unanticipated region- and cell-specific downregulation of individual KChIP auxiliary subunit isotypes in Kv4.2 knock-out mouse brain. J Neurosci 26:12137-42 [Journal] [PubMed]
Mishra P,Narayanan R (2017) Heterogeneities in afferent connectivity dominate local heterogeneities in the emergence of response decorrelation in the dentate gyrus bioRxiv [Journal]
Misonou H, Menegola M, Buchwalder L, Park EW, Meredith A, Rhodes KJ, Aldrich RW, Trimmer JS (2006) Immunolocalization of the Ca2+-activated K+ channel Slo1 in axons and nerve terminals of mammalian brain and cultured neurons. J Comp Neurol 496:289-302 [Journal] [PubMed]
Misonou H, Mohapatra DP, Trimmer JS (2005) Kv2.1: a voltage-gated k+ channel critical to dynamic control of neuronal excitability. Neurotoxicology 26:743-52 [Journal] [PubMed]
Miyashita T, Kubo Y (1997) Localization and developmental changes of the expression of two inward rectifying K(+)-channel proteins in the rat brain. Brain Res 750:251-63 [PubMed]
Monaghan MM, Trimmer JS, Rhodes KJ (2001) Experimental localization of Kv1 family voltage-gated K+ channel alpha and beta subunits in rat hippocampal formation. J Neurosci 21:5973-83 [PubMed]
Mongiat LA, Espósito MS, Lombardi G, Schinder AF (2009) Reliable activation of immature neurons in the adult hippocampus. PLoS One 4:e5320 [Journal] [PubMed]
Müller A, Kukley M, Uebachs M, Beck H, Dietrich D (2007) Nanodomains of single Ca2+ channels contribute to action potential repolarization in cortical neurons. J Neurosci 27:483-95 [Journal] [PubMed]
Murakoshi H, Trimmer JS (1999) Identification of the Kv2.1 K+ channel as a major component of the delayed rectifier K+ current in rat hippocampal neurons. J Neurosci 19:1728-35 [PubMed]
Narayanan R, Chattarji S (2010) Computational analysis of the impact of chronic stress on intrinsic and synaptic excitability in the hippocampus. J Neurophysiol 103:3070-83 [Journal] [PubMed]
  • Impact of dendritic atrophy on intrinsic and synaptic excitability (Narayanan & Chattarji, 2010) [Model]
Notomi T, Shigemoto R (2004) Immunohistochemical localization of Ih channel subunits, HCN1-4, in the rat brain. J Comp Neurol 471:241-76 [Journal] [PubMed]
Obermair GJ, Kaufmann WA, Knaus HG, Flucher BE (2003) The small conductance Ca2+-activated K+ channel SK3 is localized in nerve terminals of excitatory synapses of cultured mouse hippocampal neurons. Eur J Neurosci 17:721-31 [PubMed]
Pacheco Otalora LF, Hernandez EF, Arshadmansab MF, Francisco S, Willis M, Ermolinsky B, Zarei M, Knaus HG, Garrido-Sanabria ER (2008) Down-regulation of BK channel expression in the pilocarpine model of temporal lobe epilepsy. Brain Res 1200:116-31 [Journal] [PubMed]
Pardi MB, Ogando MB, Schinder AF, Marin-Burgin A (2015) Differential inhibition onto developing and mature granule cells generates high-frequency filters with variable gain. Elife 4:e08764 [Journal] [PubMed]
Patel SP, Parai R, Parai R, Campbell DL (2004) Regulation of Kv4.3 voltage-dependent gating kinetics by KChIP2 isoforms. J Physiol 557:19-41 [Journal] [PubMed]
Pedroni A, Minh do D, Mallamaci A, Cherubini E (2014) Electrophysiological characterization of granule cells in the dentate gyrus immediately after birth. Front Cell Neurosci 8:44 [Journal] [PubMed]
Piatti VC, Davies-Sala MG, Espósito MS, Mongiat LA, Trinchero MF, Schinder AF (2011) The timing for neuronal maturation in the adult hippocampus is modulated by local network activity. J Neurosci 31:7715-28 [Journal] [PubMed]
Platschek S, Cuntz H, Vuksic M, Deller T, Jedlicka P (2016) A general homeostatic principle following lesion induced dendritic remodeling. Acta Neuropathol Commun 4:19 [Journal] [PubMed]
Platschek S,Cuntz H,Deller T,Jedlicka P (2017) Lesion-induced dendritic remodeling as a new mechanism of homeostatic structural plasticity in the adult brain The Rewiring Brain: A Computational Approach to Structural Plasticity in the Adult Brain, Van Ooyen A:Butz-Ostendorf M, ed.
Podlaski WF, Seeholzer A, Groschner LN, Miesenböck G, Ranjan R, Vogels TP (2017) Mapping the function of neuronal ion channels in model and experiment. Elife [Journal] [PubMed]
Pourbadie HG, Naderi N, Mehranfard N, Janahmadi M, Khodagholi F, Motamedi F (2015) Preventing effect of L-type calcium channel blockade on electrophysiological alterations in dentate gyrus granule cells induced by entorhinal amyloid pathology. PLoS One 10:e0117555 [Journal] [PubMed]
Prüss H, Wenzel M, Eulitz D, Thomzig A, Karschin A, Veh RW (2003) Kir2 potassium channels in rat striatum are strategically localized to control basal ganglia function. Brain Res Mol Brain Res 110:203-19 [PubMed]
Rangel LM, Quinn LK, Chiba AA, Gage FH, Aimone JB (2013) A hypothesis for temporal coding of young and mature granule cells. Front Neurosci 7:75 [Journal] [PubMed]
Ranjan R, Khazen G, Gambazzi L, Ramaswamy S, Hill SL, Schürmann F, Markram H (2011) Channelpedia: an integrative and interactive database for ion channels. Front Neuroinform 5:36 [Journal] [PubMed]
Rettig J, Wunder F, Stocker M, Lichtinghagen R, Mastiaux F, Beckh S, Kues W, Pedarzani P, Schröter KH, Ruppersberg JP (1992) Characterization of a Shaw-related potassium channel family in rat brain. EMBO J 11:2473-86 [PubMed]
Rhodes KJ, Carroll KI, Sung MA, Doliveira LC, Monaghan MM, Burke SL, Strassle BW, Buchwalder L, Menegola M, Cao J, An WF, Trimmer JS (2004) KChIPs and Kv4 alpha subunits as integral components of A-type potassium channels in mammalian brain. J Neurosci 24:7903-15 [Journal] [PubMed]
Rhodes KJ, Strassle BW, Monaghan MM, Bekele-Arcuri Z, Matos MF, Trimmer JS (1997) Association and colocalization of the Kvbeta1 and Kvbeta2 beta-subunits with Kv1 alpha-subunits in mammalian brain K+ channel complexes. J Neurosci 17:8246-58 [PubMed]
Riazanski V, Becker A, Chen J, Sochivko D, Lie A, Wiestler OD, Elger CE, Beck H (2001) Functional and molecular analysis of transient voltage-dependent K+ currents in rat hippocampal granule cells. J Physiol 537:391-406 [PubMed]
Rudy B, Sen K, Vega-Saenz de Miera E, Lau D, Ried T, Ward DC (1991) Cloning of a human cDNA expressing a high voltage-activating, TEA-sensitive, type-A K+ channel which maps to chromosome 1 band p21. J Neurosci Res 29:401-12 [Journal] [PubMed]
Rüschenschmidt C, Chen J, Becker A, Riazanski V, Beck H (2006) Functional properties and oxidative modulation of A-type K currents in hippocampal granule cells of control and chronically epileptic rats. Eur J Neurosci 23:675-85 [Journal] [PubMed]
Rush AM, Dib-Hajj SD, Waxman SG (2005) Electrophysiological properties of two axonal sodium channels, Nav1.2 and Nav1.6, expressed in mouse spinal sensory neurones. J Physiol 564:803-15 [Journal] [PubMed]
Safiulina VF, Zacchi P, Taglialatela M, Yaari Y, Cherubini E (2008) Low expression of Kv7/M channels facilitates intrinsic and network bursting in the developing rat hippocampus. J Physiol 586:5437-53 [Journal] [PubMed]
Sailer CA, Kaufmann WA, Kogler M, Chen L, Sausbier U, Ottersen OP, Ruth P, Shipston MJ, Knaus HG (2006) Immunolocalization of BK channels in hippocampal pyramidal neurons. Eur J Neurosci 24:442-54 [Journal] [PubMed]
Sailer CA, Kaufmann WA, Marksteiner J, Knaus HG (2004) Comparative immunohistochemical distribution of three small-conductance Ca2+-activated potassium channel subunits, SK1, SK2, and SK3 in mouse brain. Mol Cell Neurosci 26:458-69 [Journal] [PubMed]
Santhakumar V, Aradi I, Soltesz I (2005) Role of mossy fiber sprouting and mossy cell loss in hyperexcitability: a network model of the dentate gyrus incorporating cell types and axonal topography. J Neurophysiol 93:437-53 [Journal] [PubMed]
  • Dentate gyrus network model (Santhakumar et al 2005) [Model]
  • Dentate gyrus (Morgan et al. 2007, 2008, Santhakumar et al. 2005, Dyhrfjeld-Johnsen et al. 2007) [Model]
Schmidt-Hieber C, Bischofberger J (2010) Fast sodium channel gating supports localized and efficient axonal action potential initiation. J Neurosci 30:10233-42 [Journal] [PubMed]
  • Fast sodium channel gating in mossy fiber axons (Schmidt-Hieber et al. 2010) [Model]
Schmidt-Hieber C, Jonas P, Bischofberger J (2004) Enhanced synaptic plasticity in newly generated granule cells of the adult hippocampus. Nature 429:184-7 [Journal] [PubMed]
Schmidt-Hieber C, Jonas P, Bischofberger J (2007) Subthreshold dendritic signal processing and coincidence detection in dentate gyrus granule cells. J Neurosci 27:8430-41 [Journal] [PubMed]
  • Dentate gyrus granule cell: subthreshold signal processing (Schmidt-Hieber et al. 2007) [Model]
Schneider CJ, Bezaire M, Soltesz I (2012) Toward a full-scale computational model of the rat dentate gyrus. Front Neural Circuits 6:83 [Journal] [PubMed]
Schneider CJ, Cuntz H, Soltesz I (2014) Linking macroscopic with microscopic neuroanatomy using synthetic neuronal populations. PLoS Comput Biol 10:e1003921 [Journal] [PubMed]
  • Generation of granule cell dendritic morphology (Schneider et al. 2014) [Model]
Schröter KH, Ruppersberg JP, Wunder F, Rettig J, Stocker M, Pongs O (1991) Cloning and functional expression of a TEA-sensitive A-type potassium channel from rat brain. FEBS Lett 278:211-6 [PubMed]
Shai AS, Anastassiou CA, Larkum ME, Koch C (2015) Physiology of layer 5 pyramidal neurons in mouse primary visual cortex: coincidence detection through bursting. PLoS Comput Biol 11:e1004090 [Journal] [PubMed]
  • Layer 5 Pyramidal Neuron (Shai et al., 2015) [Model]
Sharma AK, Reams RY, Jordan WH, Miller MA, Thacker HL, Snyder PW (2007) Mesial temporal lobe epilepsy: pathogenesis, induced rodent models and lesions. Toxicol Pathol 35:984-99 [Journal] [PubMed]
Smith JS, Iannotti CA, Dargis P, Christian EP, Aiyar J (2001) Differential expression of kcnq2 splice variants: implications to m current function during neuronal development. J Neurosci 21:1096-103 [PubMed]
Snyder JS, Ferrante SC, Cameron HA (2012) Late maturation of adult-born neurons in the temporal dentate gyrus. PLoS One 7:e48757 [Journal] [PubMed]
Softky WR, Koch C (1993) The highly irregular firing of cortical cells is inconsistent with temporal integration of random EPSPs. J Neurosci 13:334-50 [PubMed]
Solinas S, Forti L, Cesana E, Mapelli J, De Schutter E, D'Angelo E (2007) Computational reconstruction of pacemaking and intrinsic electroresponsiveness in cerebellar Golgi cells. Front Cell Neurosci 1:2 [Journal] [PubMed]
  • Cerebellar Golgi cell (Solinas et al. 2007a, 2007b) [Model]
Staley KJ, Otis TS, Mody I (1992) Membrane properties of dentate gyrus granule cells: comparison of sharp microelectrode and whole-cell recordings. J Neurophysiol 67:1346-58 [Journal] [PubMed]
Stegen M, Kirchheim F, Hanuschkin A, Staszewski O, Veh RW, Wolfart J (2012) Adaptive intrinsic plasticity in human dentate gyrus granule cells during temporal lobe epilepsy. Cereb Cortex 22:2087-101 [Journal] [PubMed]
Stocca G, Schmidt-Hieber C, Bischofberger J (2008) Differential dendritic Ca2+ signalling in young and mature hippocampal granule cells. J Physiol 586:3795-811 [Journal] [PubMed]
Stonehouse AH, Pringle JH, Norman RI, Stanfield PR, Conley EC, Brammar WJ (1999) Characterisation of Kir2.0 proteins in the rat cerebellum and hippocampus by polyclonal antibodies. Histochem Cell Biol 112:457-65 [PubMed]
Talley EM, Solorzano G, Lei Q, Kim D, Bayliss DA (2001) Cns distribution of members of the two-pore-domain (KCNK) potassium channel family. J Neurosci 21:7491-505 [PubMed]
Tinel N, Lauritzen I, Chouabe C, Lazdunski M, Borsotto M (1998) The KCNQ2 potassium channel: splice variants, functional and developmental expression. Brain localization and comparison with KCNQ3. FEBS Lett 438:171-6 [PubMed]
Tippens AL, Pare JF, Langwieser N, Moosmang S, Milner TA, Smith Y, Lee A (2008) Ultrastructural evidence for pre- and postsynaptic localization of Cav1.2 L-type Ca2+ channels in the rat hippocampus. J Comp Neurol 506:569-83 [Journal] [PubMed]
Van Geit W, Gevaert M, Chindemi G, Rössert C, Courcol JD, Muller EB, Schürmann F, Segev I, Markram H (2016) BluePyOpt: Leveraging Open Source Software and Cloud Infrastructure to Optimise Model Parameters in Neuroscience. Front Neuroinform 10:17 [Journal] [PubMed]
VanDongen AM, Frech GC, Drewe JA, Joho RH, Brown AM (1990) Alteration and restoration of K+ channel function by deletions at the N- and C-termini. Neuron 5:433-43 [PubMed]
Vega-Saenz de Miera E, Moreno H, Fruhling D, Kentros C, Rudy B (1992) Cloning of ShIII (Shaw-like) cDNAs encoding a novel high-voltage-activating, TEA-sensitive, type-A K+ channel. Proc Biol Sci 248:9-18 [Journal] [PubMed]
Volgushev M (2016) Cortical Specializations Underlying Fast Computations. Neuroscientist 22:145-64 [Journal] [PubMed]
Weaver CM, Wearne SL (2008) Neuronal firing sensitivity to morphologic and active membrane parameters. PLoS Comput Biol 4:e11 [Journal] [PubMed]
Weiser M, Vega-Saenz de Miera E, Kentros C, Moreno H, Franzen L, Hillman D, Baker H, Rudy B (1994) Differential expression of Shaw-related K+ channels in the rat central nervous system. J Neurosci 14:949-72 [PubMed]
Westenbroek RE, Merrick DK, Catterall WA (1989) Differential subcellular localization of the RI and RII Na+ channel subtypes in central neurons. Neuron 3:695-704 [PubMed]
Wissmann R, Bildl W, Oliver D, Beyermann M, Kalbitzer HR, Bentrop D, Fakler B (2003) Solution structure and function of the "tandem inactivation domain" of the neuronal A-type potassium channel Kv1.4. J Biol Chem 278:16142-50 [Journal] [PubMed]
Xu JH, Long L, Tang YC, Hu HT, Tang FR (2007) Ca(v)1.2, Ca(v)1.3, and Ca(v)2.1 in the mouse hippocampus during and after pilocarpine-induced status epilepticus. Hippocampus 17:235-51 [Journal] [PubMed]
Xu JH, Long L, Wang J, Tang YC, Hu HT, Soong TW, Tang FR (2010) Nuclear localization of Ca(v)2.2 and its distribution in the mouse central nervous system, and changes in the hippocampus during and after pilocarpine-induced status epilepticus. Neuropathol Appl Neurobiol 36:71-85 [Journal] [PubMed]
Xu P, Li Z, Xuan Q, Yang Z (2015) Different expressions of large-conductance Ca2+-activated K+ channels in the mouse renal cortex and hippocampus during postnatal development. Appl Immunohistochem Mol Morphol 23:146-52 [Journal] [PubMed]
Yang SM, Alvarez DD, Schinder AF (2015) Reliable Genetic Labeling of Adult-Born Dentate Granule Cells Using Ascl1 CreERT2 and Glast CreERT2 Murine Lines. J Neurosci 35:15379-90 [Journal] [PubMed]
Yarishkin O, Lee DY, Kim E, Cho CH, Choi JH, Lee CJ, Hwang EM, Park JY (2014) TWIK-1 contributes to the intrinsic excitability of dentate granule cells in mouse hippocampus. Mol Brain 7:80 [Journal] [PubMed]
Young CC, Stegen M, Bernard R, Müller M, Bischofberger J, Veh RW, Haas CA, Wolfart J (2009) Upregulation of inward rectifier K+ (Kir2) channels in dentate gyrus granule cells in temporal lobe epilepsy. J Physiol 587:4213-33 [Journal] [PubMed]
Zagha E, Ozaita A, Chang SY, Nadal MS, Lin U, Saganich MJ, McCormack T, Akinsanya KO, Qi SY, Rudy B (2005) DPP10 modulates Kv4-mediated A-type potassium channels. J Biol Chem 280:18853-61 [Journal] [PubMed]
Zhao C, Teng EM, Summers RG, Ming GL, Gage FH (2006) Distinct morphological stages of dentate granule neuron maturation in the adult mouse hippocampus. J Neurosci 26:3-11 [Journal] [PubMed]
(169 refs)