Legends: | Link to a Model | Reference cited by multiple papers |
 • | Model of the Xenopus tadpole swimming spinal network (Roberts et al. 2014) |
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Audet C, Dennis JE (2003) Analysis of generalized pattern searches SIAM J Optim 13:889-903 Borisyuk R, Al Azad AK, Conte D, Roberts A, Soffe SR (2011) Modeling the connectome of a simple spinal cord. Front Neuroinform 5:20 [Journal] [PubMed] Borisyuk R, Cooke T, Roberts A (2008) Stochasticity and functionality of neural systems: mathematical modelling of axon growth in the spinal cord of tadpole. Biosystems 93:101-14 [Journal] [PubMed] Charron F, Stein E, Jeong J, McMahon AP, Tessier-Lavigne M (2003) The morphogen sonic hedgehog is an axonal chemoattractant that collaborates with netrin-1 in midline axon guidance. Cell 113:11-23 [PubMed] Forbes EM, Thompson AW, Yuan J, Goodhill GJ (2012) Calcium and cAMP levels interact to determine attraction versus repulsion in axon guidance. Neuron 74:490-503 [Journal] [PubMed] Godfrey KB, Eglen SJ, Swindale NV (2009) A multi-component model of the developing retinocollicular pathway incorporating axonal and synaptic growth. PLoS Comput Biol 5:e1000600 [Journal] [PubMed] Goodhill GJ (1997) Diffusion in axon guidance. Eur J Neurosci 9:1414-21 [PubMed] Goodhill GJ (1998) Mathematical guidance for axons. Trends Neurosci 21:226-31 [PubMed] Goodhill GJ (2003) A theoretical model of axon guidance by the Robo code. Neural Comput 15:549-64 [PubMed] Goodhill GJ, Baier H (1998) Axon guidance: stretching gradients to the limit. Neural Comput 10:521-7 [PubMed] Gordon-Weeks PR (2000) Neuronal growth cones Goulding M, Pfaff SL (2005) Development of circuits that generate simple rhythmic behaviors in vertebrates. Curr Opin Neurobiol 15:14-20 [Journal] [PubMed] Helms AW, Johnson JE (2003) Specification of dorsal spinal cord interneurons. Curr Opin Neurobiol 13:42-9 [PubMed] Hentschel HG, van Ooyen A (1999) Models of axon guidance and bundling during development. Proc Biol Sci 266:2231-8 [Journal] [PubMed] Imondi R, Kaprielian Z (2001) Commissural axon pathfinding on the contralateral side of the floor plate: a role for B-class ephrins in specifying the dorsoventral position of longitudinally projecting commissural axons. Development 128:4859-71 [PubMed] Jessell TM (2000) Neuronal specification in the spinal cord: inductive signals and transcriptional codes. Nat Rev Genet 1:20-9 [Journal] [PubMed] Jung H, O'Hare CM, Holt CE (2011) Translational regulation in growth cones. Curr Opin Genet Dev 21:458-64 [Journal] [PubMed] Krottje JK, van Ooyen A (2007) A mathematical framework for modeling axon guidance. Bull Math Biol 69:3-31 [Journal] [PubMed] Lewis KE (2006) How do genes regulate simple behaviours? Understanding how different neurons in the vertebrate spinal cord are genetically specified. Philos Trans R Soc Lond B Biol Sci 361:45-66 [Journal] [PubMed] Li WC, Cooke T, Sautois B, Soffe SR, Borisyuk R, Roberts A (2007) Axon and dendrite geography predict the specificity of synaptic connections in a functioning spinal cord network. Neural Dev 2:17 [Journal] [PubMed] Li WC, Higashijima S, Parry DM, Roberts A, Soffe SR (2004) Primitive roles for inhibitory interneurons in developing frog spinal cord. J Neurosci 24:5840-8 [Journal] [PubMed] Li WC, Perrins R, Soffe SR, Yoshida M, Walford A, Roberts A (2001) Defining classes of spinal interneuron and their axonal projections in hatchling Xenopus laevis tadpoles. J Comp Neurol 441:248-65 [PubMed] Li WC, Soffe SR, Roberts A (2002) Spinal inhibitory neurons that modulate cutaneous sensory pathways during locomotion in a simple vertebrate. J Neurosci 22:10924-34 Li WC, Soffe SR, Roberts A (2003) The spinal interneurons and properties of glutamatergic synapses in a primitive vertebrate cutaneous flexion reflex. J Neurosci 23:9068-77 Li WC, Soffe SR, Wolf E, Roberts A (2006) Persistent responses to brief stimuli: feedback excitation among brainstem neurons. J Neurosci 26:4026-35 [Journal] [PubMed] Lyuksyutova AI, Lu CC, Milanesio N, King LA, Guo N, Wang Y, Nathans J, Tessier-Lavigne M, Zou Y (2003) Anterior-posterior guidance of commissural axons by Wnt-frizzled signaling. Science 302:1984-8 [Journal] [PubMed] Marder E, Taylor AL (2011) Multiple models to capture the variability in biological neurons and networks. Nat Neurosci 14:133-8 [Journal] [PubMed] McCaig CD, Rajnicek AM, Song B, Zhao M (2005) Controlling cell behavior electrically: current views and future potential. Physiol Rev 85:943-78 [Journal] [PubMed] Moon MS, Gomez TM (2005) Adjacent pioneer commissural interneuron growth cones switch from contact avoidance to axon fasciculation after midline crossing. Dev Biol 288:474-86 [Journal] [PubMed] Mortimer D, Dayan P, Burrage K, Goodhill GJ (2011) Bayes-optimal chemotaxis. Neural Comput 23:336-73 [Journal] [PubMed] Mortimer D, Fothergill T, Pujic Z, Richards LJ, Goodhill GJ (2008) Growth cone chemotaxis. Trends Neurosci 31:90-8 [Journal] [PubMed] Mortimer D, Pujic Z, Vaughan T, Thompson AW, Feldner J, Vetter I, Goodhill GJ (2010) Axon guidance by growth-rate modulation. Proc Natl Acad Sci U S A 107:5202-7 [Journal] [PubMed] Mortimer D,Dayan P,Burrage K,Goodhill GJ (2010) Optimizing chemotaxis by measuring unbound-bound transitions Physica D-Nonlinear Phenomena 239:477-484 Mueller BK (1999) Growth cone guidance: first steps towards a deeper understanding. Annu Rev Neurosci 22:351-88 [Journal] [PubMed] Munno DW, Syed NI (2003) Synaptogenesis in the CNS: an odyssey from wiring together to firing together. J Physiol 552:1-11 [Journal] [PubMed] Nishiyama M, Hoshino A, Tsai L, Henley JR, Goshima Y, Tessier-Lavigne M, Poo MM, Hong K (2003) Cyclic AMP/GMP-dependent modulation of Ca2+ channels sets the polarity of nerve growth-cone turning. Nature 423:990-5 [Journal] [PubMed] Polleux F, Ince-Dunn G, Ghosh A (2007) Transcriptional regulation of vertebrate axon guidance and synapse formation. Nat Rev Neurosci 8:331-40 [Journal] [PubMed] Rehder V, Kater SB (1996) Filopodia on neuronal growth cones: Multifunctional structures with sensory and motor capabilities Seminars Neurosciences 8:81-88 Roberts A, Clarke JD (1982) The neuroanatomy of an amphibian embryo spinal cord. Philos Trans R Soc Lond B Biol Sci 296:195-212 [Journal] [PubMed] Roberts A, Conte D, Hull M, Merrison-Hort R, al Azad AK, Buhl E, Borisyuk R, Soffe SR (2014) Can simple rules control development of a pioneer vertebrate neuronal network generating behavior? J Neurosci 34:608-21 [Journal] [PubMed]
Roberts A, Li WC, Soffe SR (2010) How neurons generate behavior in a hatchling amphibian tadpole: an outline. Front Behav Neurosci 4:16 [Journal] [PubMed] Rosoff WJ, Urbach JS, Esrick MA, McAllister RG, Richards LJ, Goodhill GJ (2004) A new chemotaxis assay shows the extreme sensitivity of axons to molecular gradients. Nat Neurosci 7:678-82 [Journal] [PubMed] Schnorrer F, Dickson BJ (2004) Axon guidance: morphogens show the way. Curr Biol 14:R19-21 [PubMed] Sergi PN, Morana Roccasalvo I, Tonazzini I, Cecchini M, Micera S (2013) Cell guidance on nanogratings: a computational model of the interplay between PC12 growth cones and nanostructures. PLoS One 8:e70304 [Journal] [PubMed] Shimozono S, Iimura T, Kitaguchi T, Higashijima S, Miyawaki A (2013) Visualization of an endogenous retinoic acid gradient across embryonic development. Nature 496:363-6 [Journal] [PubMed] Shirasaki R, Lewcock JW, Lettieri K, Pfaff SL (2006) FGF as a target-derived chemoattractant for developing motor axons genetically programmed by the LIM code. Neuron 50:841-53 [Journal] [PubMed] Shirasaki R, Murakami F (2001) Crossing the floor plate triggers sharp turning of commissural axons. Dev Biol 236:99-108 [Journal] [PubMed] Song H, Poo M (2001) The cell biology of neuronal navigation. Nat Cell Biol 3:E81-8 [Journal] [PubMed] SPERRY RW (1963) CHEMOAFFINITY IN THE ORDERLY GROWTH OF NERVE FIBER PATTERNS AND CONNECTIONS. Proc Natl Acad Sci U S A 50:703-10 [PubMed] Strogatz SH (1994) Nonlinear Dynamics And Chaos With Applications To Physics, Biology, Chemistry, And Engineering Tessier-Lavigne M, Goodman CS (1996) The molecular biology of axon guidance. Science 274:1123-33 [PubMed] van Ooyen A (2011) Using theoretical models to analyse neural development. Nat Rev Neurosci 12:311-26 [Journal] [PubMed] Yamamoto N, Tamada A, Murakami F (2002) Wiring of the brain by a range of guidance cues. Prog Neurobiol 68:393-407 [PubMed] Zou Y, Lyuksyutova AI (2007) Morphogens as conserved axon guidance cues. Curr Opin Neurobiol 17:22-8 [Journal] [PubMed] Zubler F, Douglas R (2009) A framework for modeling the growth and development of neurons and networks. Front Comput Neurosci 3:25 [Journal] [PubMed] | Ferrario A, Merrison-Hort R, Soffe SR, Borisyuk R (2018) Structural and functional properties of a probabilistic model of neuronal connectivity in a simple locomotor network. Elife [Journal] [PubMed]
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