Citation Relationships

Legends: Link to a Model Reference cited by multiple papers


Kalmbach BE, Buchin A, Long B, Close J, Nandi A, Miller JA, Bakken TE, Hodge RD, Chong P, de Frates R, Dai K, Maltzer Z, Nicovich PR, Keene CD, Silbergeld DL, Gwinn RP, Cobbs C, Ko AL, Ojemann JG, Koch C, Anastassiou CA, Lein ES, Ting JT (2018) h-Channels Contribute to Divergent Intrinsic Membrane Properties of Supragranular Pyramidal Neurons in Human versus Mouse Cerebral Cortex. Neuron 100:1194-1208.e5 [PubMed]

References and models cited by this paper

References and models that cite this paper

Andrasfalvy BK, Magee JC (2001) Distance-dependent increase in AMPA receptor number in the dendrites of adult hippocampal CA1 pyramidal neurons. J Neurosci 21:9151-9 [PubMed]
Angelo K, London M, Christensen SR, Häusser M (2007) Local and global effects of I(h) distribution in dendrites of mammalian neurons. J Neurosci 27:8643-53 [Journal] [PubMed]
Angevine JB, Sidman RL (1961) Autoradiographic study of cell migration during histogenesis of cerebral cortex in the mouse. Nature 192:766-8 [PubMed]
Bean BP (2007) The action potential in mammalian central neurons. Nat Rev Neurosci 8:451-65 [Journal] [PubMed]
Brennan GP, Baram TZ, Poolos NP (2016) Hyperpolarization-Activated Cyclic Nucleotide-Gated (HCN) Channels in Epilepsy. Cold Spring Harb Perspect Med 6:a022384 [Journal] [PubMed]
Campagnola L, Kratz MB, Manis PB (2014) ACQ4: an open-source software platform for data acquisition and analysis in neurophysiology research. Front Neuroinform 8:3 [Journal] [PubMed]
Colantuoni C, Lipska BK, Ye T, Hyde TM, Tao R, Leek JT, Colantuoni EA, Elkahloun AG, Herman MM, Weinberger DR, Kleinman JE (2011) Temporal dynamics and genetic control of transcription in the human prefrontal cortex. Nature 478:519-23 [Journal] [PubMed]
Das A, Narayanan R (2014) Active dendrites regulate spectral selectivity in location-dependent spike initiation dynamics of hippocampal model neurons. J Neurosci 34:1195-211 [Journal] [PubMed]
Das A, Narayanan R (2017) Theta-frequency selectivity in the somatic spike-triggered average of rat hippocampal pyramidal neurons is dependent on HCN channels. J Neurophysiol 118:2251-2266 [Journal] [PubMed]
Defelipe J (2011) The evolution of the brain, the human nature of cortical circuits, and intellectual creativity. Front Neuroanat 5:29 [Journal] [PubMed]
Deitcher Y, Eyal G, Kanari L, Verhoog MB, Atenekeng Kahou GA, Mansvelder HD, de Kock CPJ, Segev I (2017) Comprehensive Morpho-Electrotonic Analysis Shows 2 Distinct Classes of L2 and L3 Pyramidal Neurons in Human Temporal Cortex. Cereb Cortex 27:5398-5414 [Journal] [PubMed]
   2 Distinct Classes of L2 and L3 Pyramidal Neurons in Human Temporal Cortex (Deitcher et al 2017) [Model]
Dembrow NC, Chitwood RA, Johnston D (2010) Projection-specific neuromodulation of medial prefrontal cortex neurons. J Neurosci 30:16922-37 [Journal] [PubMed]
Dembrow NC, Zemelman BV, Johnston D (2015) Temporal dynamics of L5 dendrites in medial prefrontal cortex regulate integration versus coincidence detection of afferent inputs. J Neurosci 35:4501-14 [Journal] [PubMed]
Edelstein AD, Tsuchida MA, Amodaj N, Pinkard H, Vale RD, Stuurman N (2014) Advanced methods of microscope control using µManager software. J Biol Methods [Journal] [PubMed]
Eyal G, Mansvelder HD, de Kock CP, Segev I (2014) Dendrites impact the encoding capabilities of the axon. J Neurosci 34:8063-71 [Journal] [PubMed]
Fan Y, Fricker D, Brager DH, Chen X, Lu HC, Chitwood RA, Johnston D (2005) Activity-dependent decrease of excitability in rat hippocampal neurons through increases in I(h). Nat Neurosci 8:1542-51 [Journal] [PubMed]
Foehring RC, Waters RS (1991) Contributions of low-threshold calcium current and anomalous rectifier (Ih) to slow depolarizations underlying burst firing in human neocortical neurons in vitro. Neurosci Lett 124:17-21 [PubMed]
Gao Y, Kilfoil ML (2009) Accurate detection and complete tracking of large populations of features in three dimensions. Opt Express 17:4685-704 [PubMed]
Golding NL, Mickus TJ, Katz Y, Kath WL, Spruston N (2005) Factors mediating powerful voltage attenuation along CA1 pyramidal neuron dendrites. J Physiol 568:69-82 [Journal] [PubMed]
   Voltage attenuation in CA1 pyramidal neuron dendrites (Golding et al 2005) [Model]
Gouwens NW, Berg J, Feng D, Sorensen SA, Zeng H, Hawrylycz MJ, Koch C, Arkhipov A (2018) Systematic generation of biophysically detailed models for diverse cortical neuron types. Nat Commun 9:710 [Journal] [PubMed]
Gratiy SL, Billeh YN, Dai K, Mitelut C, Feng D, Gouwens NW, Cain N, Koch C, Anastassiou CA, Arkhipov A (2018) BioNet: A Python interface to NEURON for modeling large-scale networks. PLoS One 13:e0201630 [Journal] [PubMed]
Gu N, Vervaeke K, Hu H, Storm JF (2005) Kv7/KCNQ/M and HCN/h, but not KCa2/SK channels, contribute to the somatic medium after-hyperpolarization and excitability control in CA1 hippocampal pyramidal cells. J Physiol 566:689-715 [Journal] [PubMed]
Halgren M, Fabó D, Ulbert I, Madsen JR, Eross L, Doyle WK, Devinsky O, Schomer D, Cash SS, Halgren E (2018) Superficial Slow Rhythms Integrate Cortical Processing in Humans. Sci Rep 8:2055 [Journal] [PubMed]
Harnett MT, Magee JC, Williams SR (2015) Distribution and function of HCN channels in the apical dendritic tuft of neocortical pyramidal neurons. J Neurosci 35:1024-37 [Journal] [PubMed]
Hill RS, Walsh CA (2005) Molecular insights into human brain evolution. Nature 437:64-7 [Journal] [PubMed]
Hutcheon B, Miura RM, Puil E (1996) Subthreshold membrane resonance in neocortical neurons. J Neurophysiol 76:683-97 [Journal] [PubMed]
Hutcheon B, Yarom Y (2000) Resonance, oscillation and the intrinsic frequency preferences of neurons. Trends Neurosci 23:216-22 [PubMed]
Jacobs J, Kahana MJ, Ekstrom AD, Fried I (2007) Brain oscillations control timing of single-neuron activity in humans. J Neurosci 27:3839-44 [Journal] [PubMed]
Johnston D, Narayanan R (2008) Active dendrites: colorful wings of the mysterious butterflies. Trends Neurosci 31:309-16 [Journal] [PubMed]
Jonas P, Sakmann B (1992) Glutamate receptor channels in isolated patches from CA1 and CA3 pyramidal cells of rat hippocampal slices. J Physiol 455:143-71 [PubMed]
Jung S, Jones TD, Lugo JN, Sheerin AH, Miller JW, D'Ambrosio R, Anderson AE, Poolos NP (2007) Progressive dendritic HCN channelopathy during epileptogenesis in the rat pilocarpine model of epilepsy. J Neurosci 27:13012-21 [Journal] [PubMed]
Kalmbach BE, Chitwood RA, Dembrow NC, Johnston D (2013) Dendritic generation of mGluR-mediated slow afterdepolarization in layer 5 neurons of prefrontal cortex. J Neurosci 33:13518-32 [Journal] [PubMed]
Kalmbach BE, Gray R, Johnston D, Cook EP (2017) Systems-based analysis of dendritic nonlinearities reveals temporal feature extraction in mouse L5 cortical neurons. J Neurophysiol 117:2188-2208 [Journal] [PubMed]
Kalmbach BE, Johnston D, Brager DH (2015) Cell-Type Specific Channelopathies in the Prefrontal Cortex of the fmr1-/y Mouse Model of Fragile X Syndrome. eNeuro [Journal] [PubMed]
Koch C (1984) Cable theory in neurons with active, linearized membranes. Biol Cybern 50:15-33 [PubMed]
Koch C (2004) Biophysics of computation: information processing in single neurons
Koch C, Douglas R, Wehmeier U (1990) Visibility of synaptically induced conductance changes: theory and simulations of anatomically characterized cortical pyramidal cells. J Neurosci 10:1728-44 [PubMed]
Kole MH, Hallermann S, Stuart GJ (2006) Single Ih channels in pyramidal neuron dendrites: properties, distribution, and impact on action potential output. J Neurosci 26:1677-87 [Journal] [PubMed]
   Stochastic Ih and Na-channels in pyramidal neuron dendrites (Kole et al 2006) [Model]
Larkum ME, Waters J, Sakmann B, Helmchen F (2007) Dendritic spikes in apical dendrites of neocortical layer 2/3 pyramidal neurons. J Neurosci 27:8999-9008 [Journal] [PubMed]
Lewis AS, Schwartz E, Chan CS, Noam Y, Shin M, Wadman WJ, Surmeier DJ, Baram TZ, Macdonald RL, Chetkovich DM (2009) Alternatively spliced isoforms of TRIP8b differentially control h channel trafficking and function. J Neurosci 29:6250-65 [Journal] [PubMed]
Lewis AS, Vaidya SP, Blaiss CA, Liu Z, Stoub TR, Brager DH, Chen X, Bender RA, Estep CM, Popov AB, Kang CE, Van Veldhoven PP, Bayliss DA, Nicholson DA, Powell CM, Johnston D, Chetkovich DM (2011) Deletion of the hyperpolarization-activated cyclic nucleotide-gated channel auxiliary subunit TRIP8b impairs hippocampal Ih localization and function and promotes antidepressant behavior in mice. J Neurosci 31:7424-40 [Journal] [PubMed]
Lörincz A, Notomi T, Tamás G, Shigemoto R, Nusser Z (2002) Polarized and compartment-dependent distribution of HCN1 in pyramidal cell dendrites. Nat Neurosci 5:1185-93 [Journal] [PubMed]
Lyubimova A, Itzkovitz S, Junker JP, Fan ZP, Wu X, van Oudenaarden A (2013) Single-molecule mRNA detection and counting in mammalian tissue. Nat Protoc 8:1743-58 [Journal] [PubMed]
Magee JC (1998) Dendritic hyperpolarization-activated currents modify the integrative properties of hippocampal CA1 pyramidal neurons. J Neurosci 18:7613-24 [PubMed]
Magee JC (1999) Dendritic Ih normalizes temporal summation in hippocampal CA1 neurons Nat Neurosci 2:848 [Journal] [PubMed]
MAURO A (1961) Anomalous impedance, a phenomenological property of time-variant resistance. An analytic review. Biophys J 1:353-72 [PubMed]
Molnár Z, Kaas JH, de Carlos JA, Hevner RF, Lein E, Nemec P (2014) Evolution and development of the mammalian cerebral cortex. Brain Behav Evol 83:126-39 [Journal] [PubMed]
Narayanan R, Johnston D (2007) Long-term potentiation in rat hippocampal neurons is accompanied by spatially widespread changes in intrinsic oscillatory dynamics and excitability. Neuron 56:1061-75 [Journal] [PubMed]
   Resonance properties through Chirp stimulus responses (Narayanan Johnston 2007, 2008) [Model]
   Chirp stimulus responses in a morphologically realistic model (Narayanan and Johnston, 2007) [Model]
Narayanan R, Johnston D (2008) The h channel mediates location dependence and plasticity of intrinsic phase response in rat hippocampal neurons. J Neurosci 28:5846-60 [Journal] [PubMed]
   Resonance properties through Chirp stimulus responses (Narayanan Johnston 2007, 2008) [Model]
Nolan MF, Malleret G, Dudman JT, Buhl DL, Santoro B, Gibbs E, Vronskaya S, Buzsáki G, Siegelbaum SA, Kandel ER, Morozov A (2004) A behavioral role for dendritic integration: HCN1 channels constrain spatial memory and plasticity at inputs to distal dendrites of CA1 pyramidal neurons. Cell 119:719-32 [Journal] [PubMed]
Peng H, Ruan Z, Long F, Simpson JH, Myers EW (2010) V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets. Nat Biotechnol 28:348-53 [Journal] [PubMed]
Rakic P (1974) Neurons in rhesus monkey visual cortex: systematic relation between time of origin and eventual disposition. Science 183:425-7 [PubMed]
Rakic P (2009) Evolution of the neocortex: a perspective from developmental biology. Nat Rev Neurosci 10:724-35 [Journal] [PubMed]
Rall W (1967) Distinguishing theoretical synaptic potentials computed for different soma-dendritic distributions of synaptic input. J Neurophysiol 30:1138-68 [Journal] [PubMed]
Ratté S, Hong S, De Schutter E, Prescott SA (2013) Impact of neuronal properties on network coding: roles of spike initiation dynamics and robust synchrony transfer. Neuron 78:758-72 [Journal] [PubMed]
Robinson RB, Siegelbaum SA (2003) Hyperpolarization-activated cation currents: from molecules to physiological function. Annu Rev Physiol 65:453-80 [Journal] [PubMed]
Rothman JS, Silver RA (2018) NeuroMatic: An Integrated Open-Source Software Toolkit for Acquisition, Analysis and Simulation of Electrophysiological Data. Front Neuroinform 12:14 [Journal] [PubMed]
Routh BN, Rathour RK, Baumgardner ME, Kalmbach BE, Johnston D, Brager DH (2017) Increased transient Na+ conductance and action potential output in layer 2/3 prefrontal cortex neurons of the fmr1-/y mouse. J Physiol 595:4431-4448 [Journal] [PubMed]
Rueden CT, Schindelin J, Hiner MC, DeZonia BE, Walter AE, Arena ET, Eliceiri KW (2017) ImageJ2: ImageJ for the next generation of scientific image data. BMC Bioinformatics 18:529 [Journal] [PubMed]
Rutishauser U, Ross IB, Mamelak AN, Schuman EM (2010) Human memory strength is predicted by theta-frequency phase-locking of single neurons. Nature 464:903-7 [Journal] [PubMed]
Santoro B, Chen S, Luthi A, Pavlidis P, Shumyatsky GP, Tibbs GR, Siegelbaum SA (2000) Molecular and functional heterogeneity of hyperpolarization-activated pacemaker channels in the mouse CNS. J Neurosci 20:5264-75 [PubMed]
Santoro B, Wainger BJ, Siegelbaum SA (2004) Regulation of HCN channel surface expression by a novel C-terminal protein-protein interaction. J Neurosci 24:10750-62 [Journal] [PubMed]
Shin M, Brager D, Jaramillo TC, Johnston D, Chetkovich DM (2008) Mislocalization of h channel subunits underlies h channelopathy in temporal lobe epilepsy. Neurobiol Dis 32:26-36 [Journal] [PubMed]
Spruston N, Jonas P, Sakmann B (1995) Dendritic glutamate receptor channels in rat hippocampal CA3 and CA1 pyramidal neurons. J Physiol 482 ( Pt 2):325-52 [PubMed]
Stuart G, Spruston N (1998) Determinants of voltage attenuation in neocortical pyramidal neuron dendrites. J Neurosci 18:3501-10 [PubMed]
   Pyramidal Neuron Deep: attenuation in dendrites (Stuart, Spruston 1998) [Model]
Stuart GJ, Spruston N (2015) Dendritic integration: 60 years of progress. Nat Neurosci 18:1713-21 [Journal] [PubMed]
Testa-Silva G, Verhoog MB, Linaro D, de Kock CP, Baayen JC, Meredith RM, De Zeeuw CI, Giugliano M, Mansvelder HD (2014) High bandwidth synaptic communication and frequency tracking in human neocortex. PLoS Biol 12:e1002007 [Journal] [PubMed]
Ting JT, Daigle TL, Chen Q, Feng G (2014) Acute brain slice methods for adult and aging animals: application of targeted patch clamp analysis and optogenetics. Methods Mol Biol 1183:221-42 [Journal] [PubMed]
Ting JT, Kalmbach B, Chong P, de Frates R, Keene CD, Gwinn RP, Cobbs C, Ko AL, Ojemann JG, Ellenbogen RG, Koch C, Lein E (2018) A robust ex vivo experimental platform for molecular-genetic dissection of adult human neocortical cell types and circuits. Sci Rep 8:8407 [Journal] [PubMed]
Ulrich D (2002) Dendritic resonance in rat neocortical pyramidal cells. J Neurophysiol 87:2753-9 [Journal] [PubMed]
Vaidya SP, Johnston D (2013) Temporal synchrony and gamma-to-theta power conversion in the dendrites of CA1 pyramidal neurons. Nat Neurosci 16:1812-20 [Journal] [PubMed]
van Aerde KI, Feldmeyer D (2015) Morphological and physiological characterization of pyramidal neuron subtypes in rat medial prefrontal cortex. Cereb Cortex 25:788-805 [Journal] [PubMed]
Van Geit W, Gevaert M, Chindemi G, Rössert C, Courcol JD, Muller EB, Schürmann F, Segev I, Markram H (2016) BluePyOpt: Leveraging Open Source Software and Cloud Infrastructure to Optimise Model Parameters in Neuroscience. Front Neuroinform 10:17 [Journal] [PubMed]
von Economo C,Koskinas GN (2007) Atlas of Cytoarchitectonics of the Adult Human Cerebral Cortex , Triarhou LC, ed.
Wang B, Yin L, Zou X, Ye M, Liu Y, He T, Deng S, Jiang Y, Zheng R, Wang Y, Yang M, Lu H, Wu S, Shu Y (2015) A Subtype of Inhibitory Interneuron with Intrinsic Persistent Activity in Human and Monkey Neocortex. Cell Rep 10:1450-1458 [Journal] [PubMed]
Williams SR, Stuart GJ (2000) Site independence of EPSP time course is mediated by dendritic I(h) in neocortical pyramidal neurons. J Neurophysiol 83:3177-82 [Journal] [PubMed]
(80 refs)