Bazhenov M, Timofeev I, Steriade M, Sejnowski TJ (2002) Model of thalamocortical slow-wave sleep oscillations and transitions to activated States. J Neurosci 22:8691-704 [Journal] [PubMed]

•	Sleep-wake transitions in corticothalamic system (Bazhenov et al 2002) [Model]

Benucci A, Verschure PF, König P (2004) Two-state membrane potential fluctuations driven by weak pairwise correlations. Neural Comput 16:2351-78 [Journal] [PubMed]

Blethyn KL, Hughes SW, Tóth TI, Cope DW, Crunelli V (2006) Neuronal basis of the slow (<1 Hz) oscillation in neurons of the nucleus reticularis thalami in vitro. J Neurosci 26:2474-86 [Journal] [PubMed]

Brette R, Piwkowska Z, Monier C, Rudolph-Lilith M, Fournier J, Levy M, Frégnac Y, Bal T, Destexhe A (2008) High-resolution intracellular recordings using a real-time computational model of the electrode. Neuron 59:379-91 [Journal] [PubMed]

•	High-Res. Recordings Using a Real-Time Computational Model of the Electrode (Brette et al. 2008) [Model]

Chance FS (2007) Receiver operating characteristic (ROC) analysis for characterizing synaptic efficacy. J Neurophysiol 97:1799-808 [Journal] [PubMed]

Desai NS, Walcott EC (2006) Synaptic bombardment modulates muscarinic effects in forelimb motor cortex. J Neurosci 26:2215-26 [Journal] [PubMed]

Destexhe A (2009) Self-sustained asynchronous irregular states and Up-Down states in thalamic, cortical and thalamocortical networks of nonlinear integrate-and-fire neurons. J Comput Neurosci 27:493-506 [Journal] [PubMed]

•	Asynchronous irregular and up/down states in excitatory and inhibitory NNs (Destexhe 2009) [Model]

Destexhe A, Rudolph M (2004) Extracting information from the power spectrum of synaptic noise. J Comput Neurosci 17:327-45 [Journal] [PubMed]

Destexhe A, Rudolph M, Paré D (2003) The high-conductance state of neocortical neurons in vivo. Nat Rev Neurosci 4:739-51 [Journal] [PubMed]

Destexhe A, Sejnowski TJ (2003) Interactions between membrane conductances underlying thalamocortical slow-wave oscillations. Physiol Rev 83:1401-53 [Journal] [PubMed]

Durstewitz D, Gabriel T (2007) Dynamical basis of irregular spiking in NMDA-driven prefrontal cortex neurons. Cereb Cortex 17:894-908 [Journal] [PubMed]

•	Irregular spiking in NMDA-driven prefrontal cortex neurons (Durstewitz and Gabriel 2006) [Model]

Esser SK, Hill SL, Tononi G (2007) Sleep homeostasis and cortical synchronization: I. Modeling the effects of synaptic strength on sleep slow waves. Sleep 30:1617-30 [Journal] [PubMed]

Fröhlich F, Bazhenov M, Timofeev I, Steriade M, Sejnowski TJ (2006) Slow state transitions of sustained neural oscillations by activity-dependent modulation of intrinsic excitability. J Neurosci 26:6153-62 [Journal] [PubMed]

Häusser M, Mel B (2003) Dendrites: bug or feature? Curr Opin Neurobiol 13:372-83 [PubMed]

Humphries MD, Stewart RD, Gurney KN (2006) A physiologically plausible model of action selection and oscillatory activity in the basal ganglia. J Neurosci 26:12921-42 [Journal] [PubMed]

•	Spiking neuron model of the basal ganglia (Humphries et al 2006) [Model]

Hutt A, Mierau A, Lefebvre J (2016) Dynamic Control of Synchronous Activity in Networks of Spiking Neurons. PLoS One 11:e0161488 [Journal] [PubMed]

•	Stochastic and periodic inputs tune ongoing oscillations (Hutt et al. 2016) [Model]

Jercog D, Roxin A, Barthó P, Luczak A, Compte A, de la Rocha J (2017) UP-DOWN cortical dynamics reflect state transitions in a bistable network. Elife [Journal] [PubMed]

•	Models for cortical UP-DOWN states in a bistable inhibitory-stabilized network (Jercog et al 2017) [Model]

Jolivet R, Gerstner W (2004) Predicting spike times of a detailed conductance-based neuron model driven by stochastic spike arrival. J Physiol Paris 98:442-51 [Journal] [PubMed]

Jolivet R, Rauch A, Lüscher HR, Gerstner W (2006) Predicting spike timing of neocortical pyramidal neurons by simple threshold models. J Comput Neurosci 21:35-49 [Journal] [PubMed]

•	Spike Response Model simulator (Jolivet et al. 2004, 2006, 2008) [Model]

Karameh FN, Dahleh MA, Brown EN, Massaquoi SG (2006) Modeling the contribution of lamina 5 neuronal and network dynamics to low frequency EEG phenomena. Biol Cybern 95:289-310 [Journal] [PubMed]

Kepecs A, Raghavachari S (2007) Gating information by two-state membrane potential fluctuations. J Neurophysiol 97:3015-23 [Journal] [PubMed]

Komarov M, Krishnan G, Chauvette S, Rulkov N, Timofeev I, Bazhenov M (2018) New class of reduced computationally efficient neuronal models for large-scale simulations of brain dynamics. J Comput Neurosci 44:1-24 [Journal] [PubMed]

Munro E, Kopell N (2012) Subthreshold somatic voltage in neocortical pyramidal cells can control whether spikes propagate from the axonal plexus to axon terminals: a model study. J Neurophysiol 107:2833-52 [Journal] [PubMed]

•	Neocort. pyramidal cells subthreshold somatic voltage controls spike propagation (Munro Kopell 2012) [Model]

Okamoto H, Isomura Y, Takada M, Fukai T (2007) Temporal integration by stochastic recurrent network dynamics with bimodal neurons. J Neurophysiol 97:3859-67 [Journal] [PubMed]

•	Temporal integration by stochastic recurrent network (Okamoto et al. 2007) [Model]

Ozer M, Graham LJ, Erkaymaz O, Uzuntarla M (2007) Impact of synaptic noise and conductance state on spontaneous cortical firing. Neuroreport 18:1371-4 [Journal] [PubMed]

Pena RFO, Zaks MA, Roque AC (2018) Dynamics of spontaneous activity in random networks with multiple neuron subtypes and synaptic noise : Spontaneous activity in networks with synaptic noise. J Comput Neurosci 45:1-28 [Journal] [PubMed]

•	Dynamics in random NNs with multiple neuron subtypes (Pena et al 2018, Tomov et al 2014, 2016) [Model]

Pospischil M, Piwkowska Z, Bal T, Destexhe A (2009) Extracting synaptic conductances from single membrane potential traces. Neuroscience 158:545-52 [Journal] [PubMed]

•	Python demo of the VmT method to extract conductances from single Vm traces (Pospischil et al. 2009) [Model]

Rudolph M, Destexhe A (2001) Do neocortical pyramidal neurons display stochastic resonance? J Comput Neurosci 11:19-42 [PubMed]

Rudolph M, Destexhe A (2003) Characterization of subthreshold voltage fluctuations in neuronal membranes. Neural Comput 15:2577-618 [Journal] [PubMed]

Rudolph M, Destexhe A (2003) The discharge variability of neocortical neurons during high-conductance states. Neuroscience 119:855-73 [PubMed]

Rudolph M, Destexhe A (2003) A fast-conducting, stochastic integrative mode for neocortical neurons in vivo. J Neurosci 23:2466-76 [PubMed]

Rudolph M, Destexhe A (2004) Inferring network activity from synaptic noise. J Physiol Paris 98:452-66 [Journal] [PubMed]

Rudolph M, Destexhe A (2006) Analytical integrate-and-fire neuron models with conductance-based dynamics for event-driven simulation strategies. Neural Comput 18:2146-210 [Journal] [PubMed]

Rudolph M, Pospischil M, Timofeev I, Destexhe A (2007) Inhibition determines membrane potential dynamics and controls action potential generation in awake and sleeping cat cortex. J Neurosci 27:5280-90 [Journal] [PubMed]

•	Code to calc. spike-trig. ave (STA) conduct. from Vm (Pospischil et al. 2007, Rudolph et al. 2007) [Model]

Rulkov NF, Timofeev I, Bazhenov M (2004) Oscillations in large-scale cortical networks: map-based model. J Comput Neurosci 17:203-23 [Journal] [PubMed]

•	Large cortex model with map-based neurons (Rulkov et al 2004) [Model]

Shu Y, Duque A, Yu Y, Haider B, McCormick DA (2007) Properties of action-potential initiation in neocortical pyramidal cells: evidence from whole cell axon recordings. J Neurophysiol 97:746-60 [Journal] [PubMed]

•	Intracortical synaptic potential modulation by presynaptic somatic potential (Shu et al. 2006, 2007) [Model]

Shu Y, Hasenstaub A, Duque A, Yu Y, McCormick DA (2006) Modulation of intracortical synaptic potentials by presynaptic somatic membrane potential. Nature 441:761-5 [Journal] [PubMed]

•	Intracortical synaptic potential modulation by presynaptic somatic potential (Shu et al. 2006, 2007) [Model]

Sussillo D, Toyoizumi T, Maass W (2007) Self-tuning of neural circuits through short-term synaptic plasticity. J Neurophysiol 97:4079-95 [Journal] [PubMed]

Tomov P, Pena RF, Roque AC, Zaks MA (2016) Mechanisms of Self-Sustained Oscillatory States in Hierarchical Modular Networks with Mixtures of Electrophysiological Cell Types. Front Comput Neurosci 10:23 [Journal] [PubMed]

•	Dynamics in random NNs with multiple neuron subtypes (Pena et al 2018, Tomov et al 2014, 2016) [Model]

Traub RD, Buhl EH, Gloveli T, Whittington MA (2003) Fast rhythmic bursting can be induced in layer 2/3 cortical neurons by enhancing persistent Na+ conductance or by blocking BK channels. J Neurophysiol 89:909-21 [Journal] [PubMed]

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van Drongelen W, Koch H, Elsen FP, Lee HC, Mrejeru A, Doren E, Marcuccilli CJ, Hereld M, Stevens RL, Ramirez JM (2006) Role of persistent sodium current in bursting activity of mouse neocortical networks in vitro. J Neurophysiol 96:2564-77 [Journal] [PubMed]

Weigenand A, Schellenberger Costa M, Ngo HV, Claussen JC, Martinetz T (2014) Characterization of K-complexes and slow wave activity in a neural mass model. PLoS Comput Biol 10:e1003923 [Journal] [PubMed]

•	Neural mass model of spindle generation in the isolated thalamus (Schellenberger Costa et al. 2016) [Model]
•	Neural mass model of the sleeping cortex (Weigenand et al 2014) [Model]
•	Neural mass model of the neocortex under sleep regulation (Costa et al 2016) [Model]
•	Neural mass model of the sleeping thalamocortical system (Schellenberger Costa et al 2016) [Model]

Williams SR, Stuart GJ (2003) Voltage- and site-dependent control of the somatic impact of dendritic IPSPs. J Neurosci 23:7358-67 [PubMed]

Williams SR, Stuart GJ (2003) Role of dendritic synapse location in the control of action potential output. Trends Neurosci 26:147-54 [Journal] [PubMed]

Wilson MT, Steyn-Ross DA, Sleigh JW, Steyn-Ross ML, Wilcocks LC, Gillies IP (2006) The K-complex and slow oscillation in terms of a mean-field cortical model. J Comput Neurosci 21:243-57 [Journal] [PubMed]

Zerlaut Y, Chemla S, Chavane F, Destexhe A (2018) Modeling mesoscopic cortical dynamics using a mean-field model of conductance-based networks of adaptive exponential integrate-and-fire neurons. J Comput Neurosci 44:45-61 [Journal] [PubMed]

•	Mesoscopic dynamics from AdEx recurrent networks (Zerlaut et al JCNS 2018) (PyNN) [Model]
•	Mesoscopic dynamics from AdEx recurrent networks (Zerlaut et al JCNS 2018) [Model]