Arkhipov A, Gouwens NW, Billeh YN, Gratiy S, Iyer R, Wei Z, Xu Z, Abbasi-Asl R, Berg J, Buice M, Cain N, da Costa N, de Vries S, Denman D, Durand S, Feng D, Jarsky T, Lecoq J, Lee B, Li L, Mihalas S, Ocker GK, Olsen SR, Reid RC, Soler-Llavina G, Sorensen SA, Wang Q, Waters J, Scanziani M, Koch C (2018) Visual physiology of the layer 4 cortical circuit in silico. PLoS Comput Biol 14:e1006535 [Journal] [PubMed]

•	Visual physiology of the layer 4 cortical circuit in silico (Arkhipov et al 2018) [Model]

Brennan EKW, Sudhakar SK, Jedrasiak-Cape I, John TT, Ahmed OJ (2020) Hyperexcitable Neurons Enable Precise and Persistent Information Encoding in the Superficial Retrosplenial Cortex. Cell Rep 30:1598-1612.e8 [Journal] [PubMed]

•	Two populations of excitatory neurons in the superficial retrosplenial cortex (Brennan et al 2020) [Model]

Ermentrout GB, Terman DH (2010) Mathematical Foundations of Neuroscience Interdisciplinary Applied Mathematics, Antman SS:Marsden JE:Sirovich L:Wiggins, ed. pp.1 [Journal]

•	Mathematical Foundations of Neuroscience (Ermentrout and Terman 2010) [Model]

Golomb D, Donner K, Shacham L, Shlosberg D, Amitai Y, Hansel D (2007) Mechanisms of firing patterns in fast-spiking cortical interneurons. PLoS Comput Biol 3:e156 [Journal] [PubMed]

•	Fast-spiking cortical interneuron (Golomb et al. 2007) [Model]

Golomb D, Shedmi A, Curtu R, Ermentrout GB (2006) Persistent synchronized bursting activity in cortical tissues with low magnesium concentration: a modeling study. J Neurophysiol 95:1049-67 [Journal] [PubMed]

•	Persistent synchronized bursting activity in cortical tissues (Golomb et al 2005) [Model]

Gutnisky DA, Yu J, Hires SA, To MS, Bale M, Svoboda K, Golomb D (2017) Mechanisms underlying a thalamocortical transformation during active tactile sensation PLoS Comput Biol 13(6):e1005576 [Journal]

•	L4 cortical barrel NN model receiving thalamic input during whisking or touch (Gutnisky et al. 2017) [Model]

Hagen E, Fossum JC, Pettersen KH, Alonso JM, Swadlow HA, Einevoll GT (2017) Focal Local Field Potential Signature of the Single-Axon Monosynaptic Thalamocortical Connection. J Neurosci 37:5123-5143 [Journal] [PubMed]

•	LFP signature of monosynaptic thalamocortical connection (Hagen et al 2017) [Model]

Hayut I, Fanselow EE, Connors BW, Golomb D (2011) LTS and FS inhibitory interneurons, short-term synaptic plasticity, and cortical circuit dynamics. PLoS Comput Biol 7:e1002248 [Journal] [PubMed]

•	Rate model of a cortical RS-FS-LTS network (Hayut et al. 2011) [Model]

Helmstaedter M, Sakmann B, Feldmeyer D (2009) The relation between dendritic geometry, electrical excitability, and axonal projections of L2/3 interneurons in rat barrel cortex. Cereb Cortex 19:938-50 [Journal] [PubMed]

•	Axonal Projection and Interneuron Types (Helmstaedter et al. 2008) [Model]

Higley MJ, Contreras D (2006) Balanced excitation and inhibition determine spike timing during frequency adaptation. J Neurosci 26:448-57 [Journal] [PubMed]

Komarov M, Bazhenov M (2016) Linking dynamics of the inhibitory network to the input structure. J Comput Neurosci 41:367-391 [Journal] [PubMed]

•	Linking dynamics of the inhibitory network to the input structure (Komarov & Bazhenov 2016) [Model]

Maex R, De Schutter E (2003) Resonant synchronization in heterogeneous networks of inhibitory neurons. J Neurosci 23:10503-14 [Journal] [PubMed]

•	Fast oscillations in inhibitory networks (Maex, De Schutter 2003) [Model]

Markram H, Muller E, Ramaswamy S, Reimann MW, Abdellah M, Sanchez CA, Ailamaki A, Alonso-Nanclares L, Antille N, Arsever S, Kahou GA, Berger TK, Bilgili A, Buncic N, Chalimourda A, Chindemi G, Courcol JD, Delalondre F, Delattre V, Druckmann S, Dumusc R, Dynes J, Eilemann S, Gal E, Gevaert ME, Ghobril JP, Gidon A, Graham JW, Gupta A, Haenel V, Hay E, Heinis T, Hernando JB, Hines M, Kanari L, Keller D, Kenyon J, Khazen G, Kim Y, King JG, Kisvarday Z, Kumbhar P, Lasserre S, Le Bé JV, Magalhães BR, Merchán-Pérez A, Meystre J, Morrice BR, Muller J, Muñoz-Céspedes A, Muralidhar S, Muthurasa K, Nachbaur D, Newton TH, Nolte M, Ovcharenko A, Palacios J, Pastor L, Perin R, Ranjan R, Riachi I, Rodríguez JR, Riquelme JL, Rössert C, Sfyrakis K, Shi Y, Shillcock JC, Silberberg G, Silva R, Tauheed F, Telefont M, Toledo-Rodriguez M, Tränkler T, Van Geit W, Díaz JV, Walker R, Wang Y, Zaninetta SM (2015) Reconstruction and Simulation of Neocortical Microcircuitry. Cell 163:456-92 [Journal] [PubMed]

•	The neocortical microcircuit collaboration portal (Markram et al. 2015) [Model]

Morita K (2008) Possible role of dendritic compartmentalization in the spatial working memory circuit. J Neurosci 28:7699-724 [Journal] [PubMed]

•	Working memory circuit with branched dendrites (Morita 2008) [Model]

Morita K, Okada M, Aihara K (2007) Selectivity and stability via dendritic nonlinearity. Neural Comput 19:1798-853 [Journal] [PubMed]

Potjans TC, Diesmann M (2014) The cell-type specific cortical microcircuit: relating structure and activity in a full-scale spiking network model. Cereb Cortex 24:785-806 [Journal] [PubMed]

•	A full-scale cortical microcircuit spiking network model (Shimoura et al 2018) [Model]

Sudhakar SK, Choi TJ, Ahmed OJ (2019) Biophysical Modeling Suggests Optimal Drug Combinations for Improving the Efficacy of GABA Agonists after Traumatic Brain Injuries. J Neurotrauma 36:1632-1645 [Journal] [PubMed]

•	Biophysical modeling of pathological brain states (Sudhakar et al 2019) [Model]

Teka W, Marinov TM, Santamaria F (2014) Neuronal spike timing adaptation described with a fractional leaky integrate-and-fire model. PLoS Comput Biol 10:e1003526 [Journal] [PubMed]

•	Fractional leaky integrate-and-fire model (Teka et al. 2014) [Model]

Tiesinga PH (2005) Stimulus competition by inhibitory interference. Neural Comput 17:2421-53 [Journal] [PubMed]

Traub RD, Contreras D, Cunningham MO, Murray H, LeBeau FE, Roopun A, Bibbig A, Wilent WB, Higley MJ, Whittington MA (2005) Single-column thalamocortical network model exhibiting gamma oscillations, sleep spindles, and epileptogenic bursts. J Neurophysiol 93:2194-232 [Journal] [PubMed]

•	Collection of simulated data from a thalamocortical network model (Glabska, Chintaluri, Wojcik 2017) [Model]
•	A single column thalamocortical network model (Traub et al 2005) [Model]

Traub RD, Pais I, Bibbig A, Lebeau FE, Buhl EH, Garner H, Monyer H, Whittington MA (2005) Transient depression of excitatory synapses on interneurons contributes to epileptiform bursts during gamma oscillations in the mouse hippocampal slice. J Neurophysiol 94:1225-35 [Journal] [PubMed]

Vierling-Claassen D, Cardin JA, Moore CI, Jones SR (2010) Computational modeling of distinct neocortical oscillations driven by cell-type selective optogenetic drive: separable resonant circuits controlled by low-threshold spiking and fast-spiking interneurons. Front Hum Neurosci 4:198 [Journal] [PubMed]

•	Engaging distinct oscillatory neocortical circuits (Vierling-Claassen et al. 2010) [Model]