Agmon-Snir H (1995) A novel theoretical approach to the analysis of dendritic transients. Biophys J 69:1633-56 [Journal] [PubMed]

Angstadt JD, Calabrese RL (1989) A hyperpolarization-activated inward current in heart interneurons of the medicinal leech. J Neurosci 9:2846-57 [PubMed]

Angstadt JD, Calabrese RL (1991) Calcium currents and graded synaptic transmission between heart interneurons of the leech. J Neurosci 11:746-59 [PubMed]

Bekkers JM (2000) Distribution of slow AHP channels on hippocampal CA1 pyramidal neurons. J Neurophysiol 83:1756-9 [Journal] [PubMed]

Bower JM, Beeman D (1998) The Book Of Genesis: Exploring Realistic Neural Models With The General Neural Simulation System

Burke RE (2000) Comparison of alternative designs for reducing complex neurons to equivalent cables. J Comput Neurosci 9:31-47 [PubMed]

Bush PC, Sejnowski TJ (1993) Reduced compartmental models of neocortical pyramidal cells. J Neurosci Methods 46:159-66 [PubMed]

Clements JD, Redman SJ (1989) Cable properties of cat spinal motoneurones measured by combining voltage clamp, current clamp and intracellular staining. J Physiol 409:63-87 [PubMed]

Cymbalyuk GS, Gaudry Q, Masino MA, Calabrese RL (2002) Bursting in leech heart interneurons: cell-autonomous and network-based mechanisms. J Neurosci 22:10580-92 [PubMed]

Davison AP, Feng J, Brown D (2000) A reduced compartmental model of the mitral cell for use in network models of the olfactory bulb. Brain Res Bull 51:393-9 [PubMed]

•	Olfactory Mitral Cell (Davison et al 2000) [Model]

De Schutter E, Bower JM (1994) An active membrane model of the cerebellar Purkinje cell. I. Simulation of current clamps in slice. J Neurophysiol 71:375-400 [Journal] [PubMed]

•	Cerebellar purkinje cell (De Schutter and Bower 1994) [Model]

Destexhe A (2001) Simplified models of neocortical pyramidal cells preserving somatodendritic voltage attenuation Neurocomputing 38-40:167-173

Eichler_west_rm , Wilcox GL, Bower JM, De_schutter E (1997) Mesh generation software and numerical convergence analysis for the productionof morphometrically realistic neuron models University of Minnesota Supercomputing Institute Research Report UMSI 97-59

Fromherz P, Müller CO (1994) Cable properties of a straight neurite of a leech neuron probed by a voltage-sensitive dye. Proc Natl Acad Sci U S A 91:4604-8 [PubMed]

Gilchrist LS, Klukas KA, Jellies J, Rapus J, Eckert M, Mesce KA (1995) Distribution and developmental expression of octopamine-immunoreactive neurons in the central nervous system of the leech. J Comp Neurol 353:451-63 [Journal] [PubMed]

Goldman MS, Golowasch J, Marder E, Abbott LF (2001) Global structure, robustness, and modulation of neuronal models. J Neurosci 21:5229-38 [Journal] [PubMed]

•	Global structure, robustness, and modulation of neuronal models (Goldman et al. 2001) [Model]

Golowasch J, Buchholtz F, Epstein IR, Marder E (1992) Contribution of individual ionic currents to activity of a model stomatogastric ganglion neuron. J Neurophysiol 67:341-9 [Journal] [PubMed]

Golowasch J, Goldman MS, Abbott LF, Marder E (2002) Failure of averaging in the construction of a conductance-based neuron model. J Neurophysiol 87:1129-31 [Journal] [PubMed]

Hill AA, Lu J, Masino MA, Olsen OH, Calabrese RL (2001) A model of a segmental oscillator in the leech heartbeat neuronal network. J Comput Neurosci 10:281-302 [PubMed]

•	Leech heart interneuron network model (Hill et al 2001, 2002) [Model]

HODGKIN AL, HUXLEY AF (1952) A quantitative description of membrane current and its application to conduction and excitation in nerve. J Physiol 117:500-44 [Journal] [PubMed]

•	Squid axon (Hodgkin, Huxley 1952) (LabAXON) [Model]
•	Squid axon (Hodgkin, Huxley 1952) (NEURON) [Model]
•	Squid axon (Hodgkin, Huxley 1952) (SNNAP) [Model]
•	Squid axon (Hodgkin, Huxley 1952) used in (Chen et al 2010) (R language) [Model]
•	Squid axon (Hodgkin, Huxley 1952) (SBML, XPP, other) [Model]

Hoffman DA, Magee JC, Colbert CM, Johnston D (1997) K+ channel regulation of signal propagation in dendrites of hippocampal pyramidal neurons. Nature 387:869-75 [Journal] [PubMed]

Ivanov AI, Calabrese RL (1998) Spatial distribution and some properties of the synaptic connections between leech heart (HN) interneurons Soc Neurosci Abstr 24:751

Ivanov AI, Calabrese RL (2000) Intracellular Ca2+ dynamics during spontaneous and evoked activity of leech heart interneurons: low-threshold Ca currents and graded synaptic transmission. J Neurosci 20:4930-43 [PubMed]

Ivanov AI, Calabrese RL (2003) Modulation of spike-mediated synaptic transmission by presynaptic background Ca2+ in leech heart interneurons. J Neurosci 23:1206-18 [PubMed]

Jaeger D (2001) Accurate reconstruction of neuronal morphology Computational Neuroscience: Realistic Modeling For Experimentalists, Schutter DEE, ed. pp.159

Jezzini SH, Hill AA, Kuzyk P, Calabrese RL (2004) Detailed model of intersegmental coordination in the timing network of the leech heartbeat central pattern generator. J Neurophysiol 91:958-77 [Journal] [PubMed]

Keren N, Peled N, Korngreen A (2005) Constraining compartmental models using multiple voltage recordings and genetic algorithms. J Neurophysiol 94:3730-42 [Journal] [PubMed]

Korngreen A, Sakmann B (2000) Voltage-gated K+ channels in layer 5 neocortical pyramidal neurones from young rats: subtypes and gradients. J Physiol 525 Pt 3:621-39 [PubMed]

•	Pyramidal Neuron Deep: K+ kinetics (Korngreen, Sakmann 2000) [Model]

Magee JC (1999) Dendritic lh normalizes temporal summation in hippocampal CA1 neurons. Nat Neurosci 2:508-14 [Journal] [PubMed]

Nadim F, Olsen OH, De Schutter E, Calabrese RL (1995) Modeling the leech heartbeat elemental oscillator. I. Interactions of intrinsic and synaptic currents. J Comput Neurosci 2:215-35 [PubMed]

Naundorf B, Wolf F, Volgushev M (2006) Unique features of action potential initiation in cortical neurons. Nature 440:1060-3 [Journal] [PubMed]

Olsen OH, Calabrese RL (1996) Activation of intrinsic and synaptic currents in leech heart interneurons by realistic waveforms. J Neurosci 16:4958-70 [PubMed]

Olsen OH, Nadim F, Calabrese RL (1995) Modeling the leech heartbeat elemental oscillator. II. Exploring the parameter space. J Comput Neurosci 2:237-57 [PubMed]

Opdyke CA, Calabrese RL (1994) A persistent sodium current contributes to oscillatory activity in heart interneurons of the medicinal leech. J Comp Physiol A 175:781-9 [PubMed]

Pinsky PF, Rinzel J (1994) Intrinsic and network rhythmogenesis in a reduced Traub model for CA3 neurons. J Comput Neurosci 1:39-60 [PubMed]

•	CA3 pyramidal cell: rhythmogenesis in a reduced Traub model (Pinsky, Rinzel 1994) [Model]

Prinz AA, Bucher D, Marder E (2004) Similar network activity from disparate circuit parameters. Nat Neurosci 7:1345-52 [Journal] [PubMed]

•	Lobster STG pyloric network model with calcium sensor (Gunay & Prinz 2010) (Prinz et al. 2004) [Model]

RALL W (1959) Branching dendritic trees and motoneuron membrane resistivity. Exp Neurol 1:491-527 [PubMed]

Rall W (1964) Theoretical significance of dendritic trees for neuronal input output relations Neural Theory and Modeling, Reiss RF, ed. pp.73 [Journal]

•	Effects of synaptic location and timing on synaptic integration (Rall 1964) [Model]

Rinzel J, Ermentrout B (1998) Analysis of neural excitability and oscillations. Methods In Neuronal Modeling 2nd Edition, Segev I, Koch C, ed. pp.251

Schmidt J, Calabrese RL (1992) Evidence that acetylcholine is an inhibitory transmitter of heart interneurons in the leech. J Exp Biol 171:329-47 [PubMed]

Schulz DJ, Goaillard JM, Marder E (2006) Variable channel expression in identified single and electrically coupled neurons in different animals. Nat Neurosci 9:356-62 [Journal] [PubMed]

Simon TW, Opdyke CA, Calabrese RL (1992) Modulatory effects of FMRF-NH2 on outward currents and oscillatory activity in heart interneurons of the medicinal leech. J Neurosci 12:525-37 [PubMed]

Simon TW, Schmidt J, Calabrese RL (1994) Modulation of high-threshold transmission between heart interneurons of the medicinal leech by FMRF-NH2. J Neurophysiol 71:454-66 [Journal] [PubMed]

Stuart G, Häusser M (1994) Initiation and spread of sodium action potentials in cerebellar Purkinje cells. Neuron 13:703-12 [PubMed]

Swensen AM, Bean BP (2005) Robustness of burst firing in dissociated purkinje neurons with acute or long-term reductions in sodium conductance. J Neurosci 25:3509-20 [Journal] [PubMed]

Tobin AE, Calabrese RL (2005) Myomodulin increases Ih and inhibits the NA/K pump to modulate bursting in leech heart interneurons. J Neurophysiol 94:3938-50 [Journal] [PubMed]

Tolbert LP, Calabrese RL (1985) Anatomical analysis of contacts between identified neurons that control heartbeat in the leech Hirudo medicinalis Cell Tissue Res 242:257-267

Traub RD, Contreras D, Cunningham MO, Murray H, LeBeau FE, Roopun A, Bibbig A, Wilent WB, Higley MJ, Whittington MA (2005) Single-column thalamocortical network model exhibiting gamma oscillations, sleep spindles, and epileptogenic bursts. J Neurophysiol 93:2194-232 [Journal] [PubMed]

•	Collection of simulated data from a thalamocortical network model (Glabska, Chintaluri, Wojcik 2017) [Model]
•	A single column thalamocortical network model (Traub et al 2005) [Model]

Traub RD, Schmitz D, Jefferys JG, Draguhn A (1999) High-frequency population oscillations are predicted to occur in hippocampal pyramidal neuronal networks interconnected by axoaxonal gap junctions. Neuroscience 92:407-26 [PubMed]

Traub RD, Wong RK, Miles R, Michelson H (1991) A model of a CA3 hippocampal pyramidal neuron incorporating voltage-clamp data on intrinsic conductances. J Neurophysiol 66:635-50 [Journal] [PubMed]

•	CA3 hippocampal pyramidal neuron with voltage-clamp intrinsic conductance data (Traub et al 1991) [Model]

Zador AM, Agmon-Snir H, Segev I (1995) The morphoelectrotonic transform: a graphical approach to dendritic function. J Neurosci 15:1669-82 [PubMed]

Zhang Y, Oliva R, Gisselmann G, Hatt H, Guckenheimer J, Harris-Warrick RM (2003) Overexpression of a hyperpolarization-activated cation current (Ih) channel gene modifies the firing activity of identified motor neurons in a small neural network. J Neurosci 23:9059-67 [PubMed]

Alturki A, Feng F, Nair A, Guntu V, Nair SS (2016) Distinct current modules shape cellular dynamics in model neurons. Neuroscience 334:309-331 [Journal] [PubMed]

•	Distinct current modules shape cellular dynamics in model neurons (Alturki et al 2016) [Model]

Gouwens NW, Wilson RI (2009) Signal propagation in Drosophila central neurons. J Neurosci 29:6239-49 [Journal] [PubMed]

•	Drosophila projection neuron electrotonic structure (Gouwens and Wilson 2009) [Model]

Günay C, Sieling FH, Dharmar L, Lin WH, Wolfram V, Marley R, Baines RA, Prinz AA (2015) Distal spike initiation zone location estimation by morphological simulation of ionic current filtering demonstrated in a novel model of an identified Drosophila motoneuron. PLoS Comput Biol 11:e1004189 [Journal] [PubMed]

•	Drosophila 3rd instar larval aCC motoneuron (Gunay et al. 2015) [Model]

Hendrickson EB, Edgerton JR, Jaeger D (2011) The capabilities and limitations of conductance-based compartmental neuron models with reduced branched or unbranched morphologies and active dendrites. J Comput Neurosci 30:301-21 [Journal] [PubMed]

•	Comparison of full and reduced globus pallidus models (Hendrickson 2010) [Model]

Lamb DG, Calabrese RL (2013) Correlated conductance parameters in leech heart motor neurons contribute to motor pattern formation. PLoS One 8:e79267 [Journal] [PubMed]

•	Leech Heart (HE) Motor Neuron conductances contributions to NN activity (Lamb & Calabrese 2013) [Model]

Marasco A, Limongiello A, Migliore M (2012) Fast and accurate low-dimensional reduction of biophysically detailed neuron models. Sci Rep 2:928 [Journal] [PubMed]

•	Ca1 pyramidal neuron: reduction model (Marasco et al. 2012) [Model]

Marasco A, Limongiello A, Migliore M (2013) Using Strahler's analysis to reduce up to 200-fold the run time of realistic neuron models. Sci Rep 3:2934 [Journal] [PubMed]

•	Using Strahler`s analysis to reduce realistic models (Marasco et al, 2013) [Model]

Nowotny T, Levi R, Selverston AI (2008) Probing the dynamics of identified neurons with a data-driven modeling approach. PLoS One 3:e2627 [Journal] [PubMed]

•	Data-driven, HH-type model of the lateral pyloric (LP) cell in the STG (Nowotny et al. 2008) [Model]

Rumbell TH, Draguljic D, Yadav A, Hof PR, Luebke JI, Weaver CM (2016) Automated evolutionary optimization of ion channel conductances and kinetics in models of young and aged rhesus monkey pyramidal neurons. J Comput Neurosci 41:65-90 [Journal] [PubMed]

•	Rhesus Monkey Young and Aged L3 PFC Pyramidal Neurons (Rumbell et al. 2016) [Model]

Tobin AE, Calabrese RL (2006) Endogenous and half-center bursting in morphologically inspired models of leech heart interneurons. J Neurophysiol 96:2089-106 [Journal] [PubMed]