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Gurkiewicz M, Korngreen A (2007) A numerical approach to ion channel modelling using whole-cell voltage-clamp recordings and a genetic algorithm. PLoS Comput Biol 3:e169 [PubMed]

   Ion channel modeling with whole cell and a genetic algorithm (Gurkiewicz and Korngreen 2007)

References and models cited by this paper

References and models that cite this paper

Akaike H (1974) A new look at the statistical model identification IEEE Trans Appl Comp 19:716-723
Aldrich RW, Getting PA, Thompson SH (1979) Inactivation of delayed outward current in molluscan neurone somata. J Physiol 291:507-30 [PubMed]
Armstrong CM, Bezanilla F (1977) Inactivation of the sodium channel. II. Gating current experiments. J Gen Physiol 70:567-90 [PubMed]
Baranauskas G, Martina M (2006) Sodium currents activate without a Hodgkin-and-Huxley-type delay in central mammalian neurons. J Neurosci 26:671-84 [Journal] [PubMed]
   Sodium currents activate without a delay (Baranauskas and Martina 2006) [Model]
Bean BP (2007) The action potential in mammalian central neurons. Nat Rev Neurosci 8:451-65 [Journal] [PubMed]
Bekkers JM (2000) Properties of voltage-gated potassium currents in nucleated patches from large layer 5 cortical pyramidal neurons of the rat. J Physiol 525 Pt 3:593-609 [PubMed]
Bezanilla F, Armstrong CM (1977) Inactivation of the sodium channel. I. Sodium current experiments. J Gen Physiol 70:549-66 [PubMed]
Cannon RC, D'Alessandro G (2006) The ion channel inverse problem: neuroinformatics meets biophysics. PLoS Comput Biol 2:e91 [Journal] [PubMed]
Goldman L, Schauf CL (1972) Inactivation of the sodium current in Myxicola giant axons. Evidence for coupling to the activation process. J Gen Physiol 59:659-75 [PubMed]
Gurkiewicz M, Korngreen A (2006) Recording, analysis, and function of dendritic voltage-gated channels. Pflugers Arch 453:283-92 [Journal] [PubMed]
Hering J, Feltz A, Lambert RC (2004) Slow inactivation of the Ca(V)3.1 isotype of T-type calcium channels. J Physiol 555:331-44 [Journal] [PubMed]
Hines ML, Carnevale NT (1997) The NEURON simulation environment. Neural Comput 9:1179-209 [PubMed]
Hines ML, Carnevale NT (2000) Expanding NEURON's repertoire of mechanisms with NMODL. Neural Comput 12:995-1007 [PubMed]
HODGKIN AL, HUXLEY AF (1952) Movement of sodium and potassium ions during nervous activity. Cold Spring Harb Symp Quant Biol 17:43-52 [PubMed]
HODGKIN AL, HUXLEY AF (1952) Currents carried by sodium and potassium ions through the membrane of the giant axon of Loligo. J Physiol 116:449-72 [PubMed]
HODGKIN AL, HUXLEY AF (1952) The components of membrane conductance in the giant axon of Loligo. J Physiol 116:473-96 [PubMed]
HODGKIN AL, HUXLEY AF (1952) The dual effect of membrane potential on sodium conductance in the giant axon of Loligo. J Physiol 116:497-506 [PubMed]
HODGKIN AL, HUXLEY AF, KATZ B (1952) Measurement of current-voltage relations in the membrane of the giant axon of Loligo. J Physiol 116:424-48 [PubMed]
Horn R (1987) Statistical methods for model discrimination. Applications to gating kinetics and permeation of the acetylcholine receptor channel. Biophys J 51:255-63 [Journal] [PubMed]
Korngreen A, Kaiser KM, Zilberter Y (2005) Subthreshold inactivation of voltage-gated K+ channels modulates action potentials in neocortical bitufted interneurones from rats. J Physiol 562:421-37 [Journal] [PubMed]
   Subthreshold inact. of K channels modulates APs in bitufted interneurons (Korngreen et al 2005) [Model]
Korngreen A, Sakmann B (2000) Voltage-gated K+ channels in layer 5 neocortical pyramidal neurones from young rats: subtypes and gradients. J Physiol 525 Pt 3:621-39 [PubMed]
   Pyramidal Neuron Deep: K+ kinetics (Korngreen, Sakmann 2000) [Model]
Levy DI, Deutsch C (1996) Recovery from C-type inactivation is modulated by extracellular potassium. Biophys J 70:798-805 [Journal] [PubMed]
Llinás RR (1988) The intrinsic electrophysiological properties of mammalian neurons: insights into central nervous system function. Science 242:1654-64 [PubMed]
Magleby KL (1992) Ion channels. Preventing artifacts and reducing errors in single-channel analysis. Methods Enzymol 207:763-91 [PubMed]
Marom S, Levitan IB (1994) State-dependent inactivation of the Kv3 potassium channel. Biophys J 67:579-89 [Journal] [PubMed]
Milescu LS, Akk G, Sachs F (2005) Maximum likelihood estimation of ion channel kinetics from macroscopic currents. Biophys J 88:2494-515 [Journal] [PubMed]
Mitchell M (1996) An Introduction to Genetic Algorithms
Neher E (1992) Correction for liquid junction potentials in patch clamp experiments. Methods Enzymol 207:123-31 [PubMed]
Oyama A, Obayashi S, Nakamura T (2001) Real-coded adaptive range genetic algorithm applied to transonic wing optimization Appl Soft Comp 1:179-187
Patlak J (1991) Molecular kinetics of voltage-dependent Na+ channels. Physiol Rev 71:1047-80 [Journal] [PubMed]
Press WH, Teukolsky SA, Vellerling WT, Flannery BP (1992) Numerical Recipes In C: The Art Of Scientific Computing
Sakmann B, Neher E (1995) Single-channel Recording 2:487
Sather W, Dieudonné S, MacDonald JF, Ascher P (1992) Activation and desensitization of N-methyl-D-aspartate receptors in nucleated outside-out patches from mouse neurones. J Physiol 450:643-72 [PubMed]
Sigworth FJ, Zhou J (1992) Ion channels. Analysis of nonstationary single-channel currents. Methods Enzymol 207:746-62 [PubMed]
Starkus JG, Kuschel L, Rayner MD, Heinemann SH (1997) Ion conduction through C-type inactivated Shaker channels. J Gen Physiol 110:539-50 [PubMed]
Stuart GJ, Dodt HU, Sakmann B (1993) Patch-clamp recordings from the soma and dendrites of neurons in brain slices using infrared video microscopy. Pflugers Arch 423:511-8 [PubMed]
Willms AR (2002) NEUROFIT: software for fitting Hodgkin-Huxley models to voltage-clamp data. J Neurosci Methods 121:139-50 [PubMed]
   NEUROFIT: fitting HH models to voltage clamp data (Willms 2002) [Model]
Willms AR, Baro DJ, Harris-Warrick RM, Guckenheimer J (1999) An improved parameter estimation method for Hodgkin-Huxley models. J Comput Neurosci 6:145-68 [PubMed]
   NEUROFIT: fitting HH models to voltage clamp data (Willms 2002) [Model]
Almog M, Korngreen A (2014) A Quantitative Description of Dendritic Conductances and Its Application to Dendritic Excitation in Layer 5 Pyramidal Neurons J Neurosci 34(1):182-196 [Journal]
   Ionic mechanisms of dendritic spikes (Almog and Korngreen 2014) [Model]
Carnevale NT, Morse TM (1996-2009) Research reports that have used NEURON Web published citations at the NEURON website [Journal]
Friedrich P, Vella M, Gulyás AI, Freund TF, Káli S (2014) A flexible, interactive software tool for fitting the parameters of neuronal models. Front Neuroinform 8:63 [Journal] [PubMed]
   Software (called Optimizer) for fitting neuronal models (Friedrich et al. 2014) [Model]
Gurkiewicz M, Korngreen A, Waxman SG, Lampert A (2011) Kinetic modeling of Nav1.7 provides insight into erythromelalgia-associated F1449V mutation. J Neurophysiol 105:1546-57 [Journal] [PubMed]
   HMM of Nav1.7 WT and F1449V (Gurkiewicz et al. 2011) [Model]
J?drzejewski-Szmek Z, Abrahao KP, J?drzejewska-Szmek J, Lovinger DM, Blackwell KT (2018) Parameter Optimization Using Covariance Matrix Adaptation-Evolutionary Strategy (CMA-ES), an Approach to Investigate Differences in Channel Properties Between Neuron Subtypes. Front Neuroinform 12:47 [Journal] [PubMed]
   Parameter optimization using CMA-ES (Jedrzejewski-Szmek et al 2018) [Model]
Menon V, Spruston N, Kath WL (2009) A state-mutating genetic algorithm to design ion-channel models. Proc Natl Acad Sci U S A 106:16829-34 [Journal] [PubMed]
   Hippocampus CA1 pyramidal model with Na channel exhibiting slow inactivation (Menon et al. 2009) [Model]
Nowotny T, Levi R, Selverston AI (2008) Probing the dynamics of identified neurons with a data-driven modeling approach. PLoS One 3:e2627 [Journal] [PubMed]
   Data-driven, HH-type model of the lateral pyloric (LP) cell in the STG (Nowotny et al. 2008) [Model]
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