The neocortical microcircuit collaboration portal (Markram et al. 2015)


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Accession:188543
"This portal provides an online public resource of the Blue Brain Project's first release of a digital reconstruction of the microcircuitry of juvenile Rat somatosensory cortex, access to experimental data sets used in the reconstruction, and the resulting models."
Reference:
1 . Markram H, Muller E, Ramaswamy S, Reimann MW, Abdellah M, Sanchez CA, Ailamaki A, Alonso-Nanclares L, Antille N, Arsever S, Kahou GA, Berger TK, Bilgili A, Buncic N, Chalimourda A, Chindemi G, Courcol JD, Delalondre F, Delattre V, Druckmann S, Dumusc R, Dynes J, Eilemann S, Gal E, Gevaert ME, Ghobril JP, Gidon A, Graham JW, Gupta A, Haenel V, Hay E, Heinis T, Hernando JB, Hines M, Kanari L, Keller D, Kenyon J, Khazen G, Kim Y, King JG, Kisvarday Z, Kumbhar P, Lasserre S, Le Be JV, Magalhães BR, Merchan-Perez A, Meystre J, Morrice BR, Muller J, Muñoz-Cespedes A, et al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry. Cell 163:456-92 [PubMed]
2 . Ramaswamy S, Courcol JD, Abdellah M, Adaszewski SR, Antille N, Arsever S, Atenekeng G, Bilgili A, Brukau Y, Chalimourda A, Chindemi G, Delalondre F, Dumusc R, Eilemann S, Gevaert ME, Gleeson P, Graham JW, Hernando JB, Kanari L, Katkov Y, Keller D, King JG, Ranjan R, Reimann MW, Rössert C, Shi Y, Shillcock JC, Telefont M, Van Geit W, Diaz JV, Walker R, Wang Y, Zaninetta SM, DeFelipe J, Hill SL, Muller J, Segev I, Schürmann F, Muller EB, Markram H (2015) The neocortical microcircuit collaboration portal: a resource for rat somatosensory cortex. Front Neural Circuits 9:44 [PubMed]
3 . Reimann MW, King JG, Muller EB, Ramaswamy S, Markram H (2015) An algorithm to predict the connectome of neural microcircuits. Front Comput Neurosci 9:120 [PubMed]
4 . Abdellah M, Hernando J, Antille N, Eilemann S, Markram H, Schürmann F (2017) Reconstruction and visualization of large-scale volumetric models of neocortical circuits for physically-plausible in silico optical studies. BMC Bioinformatics 18:402 [PubMed]
5 . Reimann MW, Nolte M, Scolamiero M, Turner K, Perin R, Chindemi G, Dlotko P, Levi R, Hess K, Markram H (2017) Cliques of Neurons Bound into Cavities Provide a Missing Link between Structure and Function. Front Comput Neurosci 11:48 [PubMed]
6 . Gal E, London M, Globerson A, Ramaswamy S, Reimann MW, Muller E, Markram H, Segev I (2017) Rich cell-type-specific network topology in neocortical microcircuitry. Nat Neurosci 20:1004-1013 [PubMed]
7 . Reimann MW, Horlemann AL, Ramaswamy S, Muller EB, Markram H (2017) Morphological Diversity Strongly Constrains Synaptic Connectivity and Plasticity. Cereb Cortex 27:4570-4585 [PubMed]
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Model Information (Click on a link to find other models with that property)
Model Type: Realistic Network; Neuron or other electrically excitable cell; Synapse;
Brain Region(s)/Organism: Barrel cortex;
Cell Type(s):
Channel(s):
Gap Junctions:
Receptor(s):
Gene(s):
Transmitter(s):
Simulation Environment: NEURON (web link to model); NeuroML (web link to model);
Model Concept(s): Spatio-temporal Activity Patterns; Detailed Neuronal Models;
Implementer(s):
(located via links below)