CA1 pyr cell: Inhibitory modulation of spatial selectivity+phase precession (Grienberger et al 2017)

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Accession:225080
Spatially uniform synaptic inhibition enhances spatial selectivity and temporal coding in CA1 place cells by suppressing broad out-of-field excitation.
Reference:
1 . Grienberger C, Milstein AD, Bittner KC, Romani S, Magee JC (2017) Inhibitory suppression of heterogeneously tuned excitation enhances spatial coding in CA1 place cells. Nat Neurosci [PubMed]
Citations  Citation Browser
Model Information (Click on a link to find other models with that property)
Model Type: Neuron or other electrically excitable cell; Realistic Network;
Brain Region(s)/Organism: Hippocampus;
Cell Type(s): Hippocampus CA1 pyramidal cell;
Channel(s):
Gap Junctions:
Receptor(s): NMDA;
Gene(s):
Transmitter(s):
Simulation Environment: NEURON; Python;
Model Concept(s): Active Dendrites; Detailed Neuronal Models; Place cell/field; Synaptic Integration; Short-term Synaptic Plasticity; Spatial Navigation; Feature selectivity;
Implementer(s): Milstein, Aaron D. [aaronmil at stanford.edu];
Search NeuronDB for information about:  Hippocampus CA1 pyramidal cell; NMDA;
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GrienbergerEtAl2017
morphologies
readme.txt
ampa_kin.mod *
exp2EPSC.mod
exp2EPSG.mod
exp2EPSG_NMDA.mod
gaba_a_kin.mod *
h.mod
kad.mod *
kap.mod *
kdr.mod *
km2.mod
nas.mod
nax.mod
nmda_kin2.mod
nmda_kin3.mod
nmda_kin5.mod *
pr.mod *
vecevent.mod *
batch_EPSP_attenuation.sh
batch_place_cell_r_inp.sh
batch_place_cell_record_i_syn.sh
batch_place_cell_single_compartment.sh
batch_place_cell_subtr_inh.sh
batch_place_cell_subtr_inh_shifted.sh
batch_place_cell_subtr_inh_vclamp.sh
batch_process_i_syn_files.sh
batch_rinp.sh
batch_spine_attenuation_ratio.sh
build_expected_EPSP_reference.sh
build_expected_EPSP_reference_controller.py
build_expected_EPSP_reference_engine.py
consolidate_i_syn_files.py
consolidate_tracked_spine_data.py
fit_parameter_exponential_distribution.py
function_lib.py
optimize_AMPA_KIN.py
optimize_dendritic_excitability_020416.py
optimize_GABA_A_KIN.py
optimize_NMDA_KIN2.py
parallel_branch_cooperativity.sh
parallel_branch_cooperativity_no_nmda.sh
parallel_clustered_branch_cooperativity_nmda_controller_110315.py
parallel_clustered_branch_cooperativity_nmda_engine_110315.py
parallel_EPSP_attenuation_controller.py
parallel_EPSP_attenuation_engine.py
parallel_EPSP_i_attenuation_controller.py
parallel_EPSP_i_attenuation_engine.py
parallel_expected_EPSP_controller.py
parallel_expected_EPSP_engine.py
parallel_optimize_branch_cooperativity.sh
parallel_optimize_branch_cooperativity_nmda_kin3_controller.py
parallel_optimize_branch_cooperativity_nmda_kin3_engine.py
parallel_optimize_EPSP_amp_controller.py
parallel_optimize_EPSP_amp_engine.py
parallel_optimize_pr.sh
parallel_optimize_pr_controller_020116.py
parallel_optimize_pr_engine_020116.py
parallel_rinp_controller.py
parallel_rinp_engine.py
parallel_spine_attenuation_ratio_controller.py
parallel_spine_attenuation_ratio_engine.py
plot_channel_distributions.py
plot_NMDAR_kinetics.py
plot_results.py
plot_spine_traces.py
plot_synaptic_conductance_facilitation.py
process_i_syn_files.py
record_bAP_attenuation.py
simulate_place_cell_no_precession.py
simulate_place_cell_single_compartment.py
simulate_place_cell_single_compartment_no_nmda.py
simulate_place_cell_subtr_inh.py
simulate_place_cell_subtr_inh_add_noise.py
simulate_place_cell_subtr_inh_add_noise_no_na.py
simulate_place_cell_subtr_inh_no_na.py
simulate_place_cell_subtr_inh_no_nmda_no_na.py
simulate_place_cell_subtr_inh_r_inp.py
simulate_place_cell_subtr_inh_rec_i_syn.py
simulate_place_cell_subtr_inh_shifted.py
simulate_place_cell_subtr_inh_silent.py
simulate_place_cell_subtr_inh_vclamp.py
specify_cells.py
                            
#!/bin/bash
#cd $HOME/PycharmProjects/NEURON/
cd $HOME/CA1Sim
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qsub -N job_062716_e2700_i600_simple2_shape0.5_inh0_90 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment.py 2 2700 600 0 0.5 90'
qsub -N job_062716_e2700_i600_simple2_shape0.5_inh0_91 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment.py 2 2700 600 0 0.5 91'
qsub -N job_062716_e2700_i600_simple2_shape0.5_inh0_92 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment.py 2 2700 600 0 0.5 92'
qsub -N job_062716_e2700_i600_simple2_shape0.5_inh0_93 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment.py 2 2700 600 0 0.5 93'
qsub -N job_062716_e2700_i600_simple2_shape0.5_inh0_94 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment.py 2 2700 600 0 0.5 94'
qsub -N job_062716_e2700_i600_simple2_shape0.5_inh0_95 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment.py 2 2700 600 0 0.5 95'
qsub -N job_062716_e2700_i600_simple2_shape0.5_inh0_96 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment.py 2 2700 600 0 0.5 96'
qsub -N job_062716_e2700_i600_simple2_shape0.5_inh0_97 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment.py 2 2700 600 0 0.5 97'
qsub -N job_062716_e2700_i600_simple2_shape0.5_inh0_98 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment.py 2 2700 600 0 0.5 98'
qsub -N job_062716_e2700_i600_simple2_shape0.5_inh0_99 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment.py 2 2700 600 0 0.5 99'

qsub -N job_062716_e2700_i600_simple2_shape0.5_inh3_100 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment.py 2 2700 600 3 0.5 100'
qsub -N job_062716_e2700_i600_simple2_shape0.5_inh3_101 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment.py 2 2700 600 3 0.5 101'
qsub -N job_062716_e2700_i600_simple2_shape0.5_inh3_102 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment.py 2 2700 600 3 0.5 102'
qsub -N job_062716_e2700_i600_simple2_shape0.5_inh3_103 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment.py 2 2700 600 3 0.5 103'
qsub -N job_062716_e2700_i600_simple2_shape0.5_inh3_104 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment.py 2 2700 600 3 0.5 104'
qsub -N job_062716_e2700_i600_simple2_shape0.5_inh3_105 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment.py 2 2700 600 3 0.5 105'
qsub -N job_062716_e2700_i600_simple2_shape0.5_inh3_106 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment.py 2 2700 600 3 0.5 106'
qsub -N job_062716_e2700_i600_simple2_shape0.5_inh3_107 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment.py 2 2700 600 3 0.5 107'
qsub -N job_062716_e2700_i600_simple2_shape0.5_inh3_108 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment.py 2 2700 600 3 0.5 108'
qsub -N job_062716_e2700_i600_simple2_shape0.5_inh3_109 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment.py 2 2700 600 3 0.5 109'
qsub -N job_062716_e2700_i600_simple2_shape0.5_inh3_110 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment.py 2 2700 600 3 0.5 110'
qsub -N job_062716_e2700_i600_simple2_shape0.5_inh3_111 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment.py 2 2700 600 3 0.5 111'
qsub -N job_062716_e2700_i600_simple2_shape0.5_inh3_112 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment.py 2 2700 600 3 0.5 112'
qsub -N job_062716_e2700_i600_simple2_shape0.5_inh3_113 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment.py 2 2700 600 3 0.5 113'
qsub -N job_062716_e2700_i600_simple2_shape0.5_inh3_114 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment.py 2 2700 600 3 0.5 114'
qsub -N job_062716_e2700_i600_simple2_shape0.5_inh3_115 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment.py 2 2700 600 3 0.5 115'
qsub -N job_062716_e2700_i600_simple2_shape0.5_inh3_116 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment.py 2 2700 600 3 0.5 116'
qsub -N job_062716_e2700_i600_simple2_shape0.5_inh3_117 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment.py 2 2700 600 3 0.5 117'
qsub -N job_062716_e2700_i600_simple2_shape0.5_inh3_118 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment.py 2 2700 600 3 0.5 118'
qsub -N job_062716_e2700_i600_simple2_shape0.5_inh3_119 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment.py 2 2700 600 3 0.5 119'

qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh0_120 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 0 1.0 120'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh0_121 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 0 1.0 121'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh0_122 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 0 1.0 122'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh0_123 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 0 1.0 123'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh0_124 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 0 1.0 124'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh0_125 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 0 1.0 125'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh0_126 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 0 1.0 126'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh0_127 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 0 1.0 127'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh0_128 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 0 1.0 128'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh0_129 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 0 1.0 129'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh0_130 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 0 1.0 130'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh0_131 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 0 1.0 131'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh0_132 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 0 1.0 132'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh0_133 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 0 1.0 133'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh0_134 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 0 1.0 134'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh0_135 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 0 1.0 135'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh0_136 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 0 1.0 136'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh0_137 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 0 1.0 137'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh0_138 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 0 1.0 138'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh0_139 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 0 1.0 139'

qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh3_140 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 3 1.0 140'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh3_141 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 3 1.0 141'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh3_142 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 3 1.0 142'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh3_143 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 3 1.0 143'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh3_144 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 3 1.0 144'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh3_145 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 3 1.0 145'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh3_146 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 3 1.0 146'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh3_147 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 3 1.0 147'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh3_148 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 3 1.0 148'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh3_149 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 3 1.0 149'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh3_150 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 3 1.0 150'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh3_151 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 3 1.0 151'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh3_152 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 3 1.0 152'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh3_153 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 3 1.0 153'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh3_154 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 3 1.0 154'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh3_155 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 3 1.0 155'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh3_156 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 3 1.0 156'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh3_157 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 3 1.0 157'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh3_158 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 3 1.0 158'
qsub -N job_062716_e675_i600_simple_density3_shape1.0_inh3_159 -l d_rt=600 -b y -cwd -V 'python simulate_place_cell_single_compartment_biased_density.py 3 675 600 3 1.0 159'