CA1 pyr cell: Inhibitory modulation of spatial selectivity+phase precession (Grienberger et al 2017)

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Accession:225080
Spatially uniform synaptic inhibition enhances spatial selectivity and temporal coding in CA1 place cells by suppressing broad out-of-field excitation.
Reference:
1 . Grienberger C, Milstein AD, Bittner KC, Romani S, Magee JC (2017) Inhibitory suppression of heterogeneously tuned excitation enhances spatial coding in CA1 place cells. Nat Neurosci [PubMed]
Citations  Citation Browser
Model Information (Click on a link to find other models with that property)
Model Type: Neuron or other electrically excitable cell; Realistic Network;
Brain Region(s)/Organism: Hippocampus;
Cell Type(s): Hippocampus CA1 pyramidal cell;
Channel(s):
Gap Junctions:
Receptor(s): NMDA;
Gene(s):
Transmitter(s):
Simulation Environment: NEURON; Python;
Model Concept(s): Active Dendrites; Detailed Neuronal Models; Place cell/field; Synaptic Integration; Short-term Synaptic Plasticity; Spatial Navigation; Feature selectivity;
Implementer(s): Milstein, Aaron D. [aaronmil at stanford.edu];
Search NeuronDB for information about:  Hippocampus CA1 pyramidal cell; NMDA;
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GrienbergerEtAl2017
morphologies
readme.txt
ampa_kin.mod *
exp2EPSC.mod
exp2EPSG.mod
exp2EPSG_NMDA.mod
gaba_a_kin.mod *
h.mod
kad.mod *
kap.mod *
kdr.mod *
km2.mod
nas.mod
nax.mod
nmda_kin2.mod
nmda_kin3.mod
nmda_kin5.mod *
pr.mod *
vecevent.mod *
batch_EPSP_attenuation.sh
batch_place_cell_r_inp.sh
batch_place_cell_record_i_syn.sh
batch_place_cell_single_compartment.sh
batch_place_cell_subtr_inh.sh
batch_place_cell_subtr_inh_shifted.sh
batch_place_cell_subtr_inh_vclamp.sh
batch_process_i_syn_files.sh
batch_rinp.sh
batch_spine_attenuation_ratio.sh
build_expected_EPSP_reference.sh
build_expected_EPSP_reference_controller.py
build_expected_EPSP_reference_engine.py
consolidate_i_syn_files.py
consolidate_tracked_spine_data.py
fit_parameter_exponential_distribution.py
function_lib.py
optimize_AMPA_KIN.py
optimize_dendritic_excitability_020416.py
optimize_GABA_A_KIN.py
optimize_NMDA_KIN2.py
parallel_branch_cooperativity.sh
parallel_branch_cooperativity_no_nmda.sh
parallel_clustered_branch_cooperativity_nmda_controller_110315.py
parallel_clustered_branch_cooperativity_nmda_engine_110315.py
parallel_EPSP_attenuation_controller.py
parallel_EPSP_attenuation_engine.py
parallel_EPSP_i_attenuation_controller.py
parallel_EPSP_i_attenuation_engine.py
parallel_expected_EPSP_controller.py
parallel_expected_EPSP_engine.py
parallel_optimize_branch_cooperativity.sh
parallel_optimize_branch_cooperativity_nmda_kin3_controller.py
parallel_optimize_branch_cooperativity_nmda_kin3_engine.py
parallel_optimize_EPSP_amp_controller.py
parallel_optimize_EPSP_amp_engine.py
parallel_optimize_pr.sh
parallel_optimize_pr_controller_020116.py
parallel_optimize_pr_engine_020116.py
parallel_rinp_controller.py
parallel_rinp_engine.py
parallel_spine_attenuation_ratio_controller.py
parallel_spine_attenuation_ratio_engine.py
plot_channel_distributions.py
plot_NMDAR_kinetics.py
plot_results.py
plot_spine_traces.py
plot_synaptic_conductance_facilitation.py
process_i_syn_files.py
record_bAP_attenuation.py
simulate_place_cell_no_precession.py
simulate_place_cell_single_compartment.py
simulate_place_cell_single_compartment_no_nmda.py
simulate_place_cell_subtr_inh.py
simulate_place_cell_subtr_inh_add_noise.py
simulate_place_cell_subtr_inh_add_noise_no_na.py
simulate_place_cell_subtr_inh_no_na.py
simulate_place_cell_subtr_inh_no_nmda_no_na.py
simulate_place_cell_subtr_inh_r_inp.py
simulate_place_cell_subtr_inh_rec_i_syn.py
simulate_place_cell_subtr_inh_shifted.py
simulate_place_cell_subtr_inh_silent.py
simulate_place_cell_subtr_inh_vclamp.py
specify_cells.py
                            
#!/bin/bash
#cd $HOME/PycharmProjects/NEURON/
cd $HOME/CA1Sim
qsub -N job_093016_e3200_i600_subtr0_vclamp0_inh0_0 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 0 0 0 0'
qsub -N job_093016_e3200_i600_subtr0_vclamp0_inh0_1 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 0 0 0 1'
qsub -N job_093016_e3200_i600_subtr0_vclamp0_inh0_2 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 0 0 0 2'
qsub -N job_093016_e3200_i600_subtr0_vclamp0_inh0_3 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 0 0 0 3'
qsub -N job_093016_e3200_i600_subtr0_vclamp0_inh0_4 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 0 0 0 4'
qsub -N job_093016_e3200_i600_subtr0_vclamp0_inh0_5 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 0 0 0 5'
qsub -N job_093016_e3200_i600_subtr0_vclamp0_inh0_6 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 0 0 0 6'
qsub -N job_093016_e3200_i600_subtr0_vclamp0_inh0_7 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 0 0 0 7'
qsub -N job_093016_e3200_i600_subtr0_vclamp0_inh0_8 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 0 0 0 8'
qsub -N job_093016_e3200_i600_subtr0_vclamp0_inh0_9 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 0 0 0 9'
qsub -N job_093016_e3200_i600_subtr0_vclamp0_inh3_20 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 0 3 0 20'
qsub -N job_093016_e3200_i600_subtr0_vclamp0_inh3_21 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 0 3 0 21'
qsub -N job_093016_e3200_i600_subtr0_vclamp0_inh3_22 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 0 3 0 22'
qsub -N job_093016_e3200_i600_subtr0_vclamp0_inh3_23 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 0 3 0 23'
qsub -N job_093016_e3200_i600_subtr0_vclamp0_inh3_24 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 0 3 0 24'
qsub -N job_093016_e3200_i600_subtr0_vclamp0_inh3_25 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 0 3 0 25'
qsub -N job_093016_e3200_i600_subtr0_vclamp0_inh3_26 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 0 3 0 26'
qsub -N job_093016_e3200_i600_subtr0_vclamp0_inh3_27 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 0 3 0 27'
qsub -N job_093016_e3200_i600_subtr0_vclamp0_inh3_28 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 0 3 0 28'
qsub -N job_093016_e3200_i600_subtr0_vclamp0_inh3_29 -m e -M milsteina@janelia.hhmi.org -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 0 3 0 29'
qsub -N job_093016_e3200_i600_subtr1_vclamp0_inh0_30 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 1 0 0 30'
qsub -N job_093016_e3200_i600_subtr1_vclamp0_inh0_31 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 1 0 0 31'
qsub -N job_093016_e3200_i600_subtr1_vclamp0_inh0_32 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 1 0 0 32'
qsub -N job_093016_e3200_i600_subtr1_vclamp0_inh0_33 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 1 0 0 33'
qsub -N job_093016_e3200_i600_subtr1_vclamp0_inh0_34 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 1 0 0 34'
qsub -N job_093016_e3200_i600_subtr1_vclamp0_inh0_35 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 1 0 0 35'
qsub -N job_093016_e3200_i600_subtr1_vclamp0_inh0_36 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 1 0 0 36'
qsub -N job_093016_e3200_i600_subtr1_vclamp0_inh0_37 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 1 0 0 37'
qsub -N job_093016_e3200_i600_subtr1_vclamp0_inh0_38 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 1 0 0 38'
qsub -N job_093016_e3200_i600_subtr1_vclamp0_inh0_39 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 1 0 0 39'
qsub -N job_093016_e3200_i600_subtr1_vclamp0_inh3_50 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 1 3 0 50'
qsub -N job_093016_e3200_i600_subtr1_vclamp0_inh3_51 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 1 3 0 51'
qsub -N job_093016_e3200_i600_subtr1_vclamp0_inh3_52 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 1 3 0 52'
qsub -N job_093016_e3200_i600_subtr1_vclamp0_inh3_53 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 1 3 0 53'
qsub -N job_093016_e3200_i600_subtr1_vclamp0_inh3_54 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 1 3 0 54'
qsub -N job_093016_e3200_i600_subtr1_vclamp0_inh3_55 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 1 3 0 55'
qsub -N job_093016_e3200_i600_subtr1_vclamp0_inh3_56 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 1 3 0 56'
qsub -N job_093016_e3200_i600_subtr1_vclamp0_inh3_57 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 1 3 0 57'
qsub -N job_093016_e3200_i600_subtr1_vclamp0_inh3_58 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 1 3 0 58'
qsub -N job_093016_e3200_i600_subtr1_vclamp0_inh3_59 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 1 3 0 59'
qsub -N job_093016_e3200_i600_subtr2_vclamp0_inh0_60 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 2 0 0 60'
qsub -N job_093016_e3200_i600_subtr2_vclamp0_inh0_61 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 2 0 0 61'
qsub -N job_093016_e3200_i600_subtr2_vclamp0_inh0_62 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 2 0 0 62'
qsub -N job_093016_e3200_i600_subtr2_vclamp0_inh0_63 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 2 0 0 63'
qsub -N job_093016_e3200_i600_subtr2_vclamp0_inh0_64 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 2 0 0 64'
qsub -N job_093016_e3200_i600_subtr2_vclamp0_inh0_65 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 2 0 0 65'
qsub -N job_093016_e3200_i600_subtr2_vclamp0_inh0_66 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 2 0 0 66'
qsub -N job_093016_e3200_i600_subtr2_vclamp0_inh0_67 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 2 0 0 67'
qsub -N job_093016_e3200_i600_subtr2_vclamp0_inh0_68 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 2 0 0 68'
qsub -N job_093016_e3200_i600_subtr2_vclamp0_inh0_69 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 2 0 0 69'
qsub -N job_093016_e3200_i600_subtr2_vclamp0_inh3_80 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 2 3 0 80'
qsub -N job_093016_e3200_i600_subtr2_vclamp0_inh3_81 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 2 3 0 81'
qsub -N job_093016_e3200_i600_subtr2_vclamp0_inh3_82 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 2 3 0 82'
qsub -N job_093016_e3200_i600_subtr2_vclamp0_inh3_83 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 2 3 0 83'
qsub -N job_093016_e3200_i600_subtr2_vclamp0_inh3_84 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 2 3 0 84'
qsub -N job_093016_e3200_i600_subtr2_vclamp0_inh3_85 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 2 3 0 85'
qsub -N job_093016_e3200_i600_subtr2_vclamp0_inh3_86 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 2 3 0 86'
qsub -N job_093016_e3200_i600_subtr2_vclamp0_inh3_87 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 2 3 0 87'
qsub -N job_093016_e3200_i600_subtr2_vclamp0_inh3_88 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 2 3 0 88'
qsub -N job_093016_e3200_i600_subtr2_vclamp0_inh3_89 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 2 3 0 89'
qsub -N job_093016_e3200_i600_subtr3_vclamp0_inh0_90 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 3 0 0 90'
qsub -N job_093016_e3200_i600_subtr3_vclamp0_inh0_91 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 3 0 0 91'
qsub -N job_093016_e3200_i600_subtr3_vclamp0_inh0_92 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 3 0 0 92'
qsub -N job_093016_e3200_i600_subtr3_vclamp0_inh0_93 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 3 0 0 93'
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qsub -N job_093016_e3200_i600_subtr3_vclamp0_inh0_95 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 3 0 0 95'
qsub -N job_093016_e3200_i600_subtr3_vclamp0_inh0_96 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 3 0 0 96'
qsub -N job_093016_e3200_i600_subtr3_vclamp0_inh0_97 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 3 0 0 97'
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qsub -N job_093016_e3200_i600_subtr3_vclamp0_inh3_111 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 3 3 0 111'
qsub -N job_093016_e3200_i600_subtr3_vclamp0_inh3_112 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 3 3 0 112'
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qsub -N job_093016_e3200_i600_subtr3_vclamp0_inh3_114 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 3 3 0 114'
qsub -N job_093016_e3200_i600_subtr3_vclamp0_inh3_115 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 3 3 0 115'
qsub -N job_093016_e3200_i600_subtr3_vclamp0_inh3_116 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 3 3 0 116'
qsub -N job_093016_e3200_i600_subtr3_vclamp0_inh3_117 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 3 3 0 117'
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qsub -N job_093016_e3200_i600_subtr3_vclamp0_inh3_119 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 3 3 0 119'
qsub -N job_093016_e3200_i600_subtr4_vclamp0_inh0_120 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 4 0 0 120'
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qsub -N job_093016_e3200_i600_subtr4_vclamp0_inh0_122 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 4 0 0 122'
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qsub -N job_093016_e3200_i600_subtr4_vclamp0_inh3_140 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 4 3 0 140'
qsub -N job_093016_e3200_i600_subtr4_vclamp0_inh3_141 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 4 3 0 141'
qsub -N job_093016_e3200_i600_subtr4_vclamp0_inh3_142 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 4 3 0 142'
qsub -N job_093016_e3200_i600_subtr4_vclamp0_inh3_143 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 4 3 0 143'
qsub -N job_093016_e3200_i600_subtr4_vclamp0_inh3_144 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 4 3 0 144'
qsub -N job_093016_e3200_i600_subtr4_vclamp0_inh3_145 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 4 3 0 145'
qsub -N job_093016_e3200_i600_subtr4_vclamp0_inh3_146 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 4 3 0 146'
qsub -N job_093016_e3200_i600_subtr4_vclamp0_inh3_147 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 4 3 0 147'
qsub -N job_093016_e3200_i600_subtr4_vclamp0_inh3_148 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 4 3 0 148'
qsub -N job_093016_e3200_i600_subtr4_vclamp0_inh3_149 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_vclamp.py 4 3 0 149'