Modeling dendritic spikes and plasticity (Bono and Clopath 2017)

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Accession:232914
Biophysical model and reduced neuron model with voltage-dependent plasticity.
Reference:
1 . Bono J, Clopath C (2017) Modeling somatic and dendritic spike mediated plasticity at the single neuron and network level Nature Communications 8:706
Citations  Citation Browser
Model Information (Click on a link to find other models with that property)
Model Type: Neuron or other electrically excitable cell; Realistic Network;
Brain Region(s)/Organism:
Cell Type(s):
Channel(s):
Gap Junctions:
Receptor(s):
Gene(s):
Transmitter(s):
Simulation Environment: Brian 2; Python;
Model Concept(s): Synaptic Plasticity; STDP; Dendritic Action Potentials;
Implementer(s): Bono, Jacopo [ j.bono13 at imperial.ac.uk];
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Modeling somatic and dendritic spike mediated plasticity at the single neuron and network level
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Figures 1-5:

(-) The folder '0. Model' contains general scripts concerning the biophysical model used in simulations for Figs. 1-5: model morphology, model equations, model parameters, ... 

(-) Folders Fig 1 to Fig 5 contain scripts to generate the necessary data used for respective figures in the article, using the biophysical neuron model the from '0. Model' folder.

(-) All scripts were written to be compatible with Python3.5 and Brian2 v2.0.

Figure 6:

(-) The folders 'Model CPU' and 'Model GPU' contain general scripts concerning the reduced model used in simulations for Fig 6. 

(-) The folder Fig 6 contains scripts to generate the necessary data used for figure 6. 

(-) All scripts were written to be compatible with Python3.5 with the tensorflow package (to run on GPU).


Jacopo Bono
September 2017