Advanced search
User account
Login
Register
Find models by
Model name
First author
Each author
Find models for
Brain region
Concept
Find models of
Realistic Microcircuits
Connectionist Networks
Spiking neuron model of the basal ganglia (Humphries et al 2006)
 
Download zip file
Help downloading and running models
Model Information
Model File
Accession:
83559
A spiking neuron model of the basal ganglia (BG) circuit (striatum, STN, GP, SNr). Includes: parallel anatomical channels; tonic dopamine; dopamine receptors in striatum, STN, and GP; burst-firing in STN; GABAa, AMPA, and NMDA currents; effects of synaptic location. Model demonstrates selection and switching of input signals. Replicates experimental data on changes in slow-wave (<1 Hz) and gamma-band oscillations within BG nuclei following lesions and pharmacological manipulations.
Reference:
1 .
Humphries MD, Stewart RD, Gurney KN (2006) A physiologically plausible model of action selection and oscillatory activity in the basal ganglia.
J Neurosci
26
:12921-42
[
PubMed
]
Citations
Citation Browser
Model Information
(Click on a link to find other models with that property)
Model Type:
Realistic Network;
Brain Region(s)/Organism:
Basal ganglia;
Cell Type(s):
Neostriatum medium spiny direct pathway GABA cell;
Subthalamus nucleus projection neuron;
Globus pallidus neuron;
Abstract integrate-and-fire leaky neuron;
Channel(s):
Gap Junctions:
Receptor(s):
Dopaminergic Receptor;
Gene(s):
Transmitter(s):
Dopamine;
Gaba;
Glutamate;
Simulation Environment:
MATLAB;
Model Concept(s):
Oscillations;
Parkinson's;
Action Selection/Decision Making;
Sleep;
Rebound firing;
Implementer(s):
Humphries, Mark D [m.d.humphries at shef.ac.uk];
Search NeuronDB
for information about:
Neostriatum medium spiny direct pathway GABA cell
;
Dopaminergic Receptor
;
Dopamine
;
Gaba
;
Glutamate
;
Download the displayed file
/
BG_spiking_model
LIFtools
Marks tools
Postproc
readme.txt
batch_analyse_stngpe.m
BATCH_BG_heterogenous_AMPA_NMDA.m
BATCH_BG_heterogenous_AMPA_NMDA2.m
batch_selection_grid_DA.m
BG_GHS_inputs.m
BG_net_shunt_AMPA_NMDA.m
BG_net_shunt_AMPA_NMDA2.m
combine_stngpe_analysis.m
extract_spikes.m
GHS_LIF_solver_shunt_AMPA_NMDA.c
GHS_LIF_solver_shunt_AMPA_NMDA.dll
GHS_LIF_solver_shunt_AMPA_NMDA.mexa64
GHS_LIF_solver_shunt_AMPA_NMDA.mexglx
input_grid.mat
mean_outputs.m
models_as_individuals.m
pars.m
pars1b.m
pars2.m
pars3a.m
pars3b.m
pars4a.m
pars4b.m
pars4c.m
pars4d.m
pars5_1a.m
pars5_1b.m
pars5_1c.m
pars5_1d.m
pars5_2a.m
pars5_2b.m
pars5_2c.m
pars5_2d.m
pars5_3a.m
pars5_3b.m
pars5_3c.m
pars5_3d.m
pars5_4a.m
pars5_4b.m
pars5_4c.m
pars5_4d.m
pars5_5a.m
pars5_5b.m
pars5_5c.m
pars5_5d.m
pars5_6d.m
pars6a.m
pars6b.m
pars6c.m
single_run1.m
single_run1b.m
single_run2.m
single_run3a.m
single_run3b.m
single_run4a.m
single_run4b.m
single_run4c.m
single_run4d.m
single_run5_1a.m
single_run5_1b.m
single_run5_1c.m
single_run5_1d.m
single_run5_2a.m
single_run5_2b.m
single_run5_2c.m
single_run5_2d.m
single_run5_3a.m
single_run5_3b.m
single_run5_3c.m
single_run5_3d.m
single_run5_4a.m
single_run5_4b.m
single_run5_4c.m
single_run5_4d.m
single_run5_5a.m
single_run5_5b.m
single_run5_5c.m
single_run5_5d.m
single_run5_6d.m
single_run6a.m
single_run6b.m
single_run6c.m
state.mat
sum_flags.m
sum_flags45.m
sum_flags6.m
User Manual.pdf
ModelDB scripts have detected that binary file '/BG_spiking_model/GHS_LIF_solver_shunt_AMPA_NMDA.mexa64' is not displayable. You may download the file to examine if desired.
<- Select file from this column.