<?xml version="1.0" encoding="UTF-8"?>
<neuroml xmlns="http://morphml.org/neuroml/schema"
xmlns:mml="http://morphml.org/morphml/schema"
xmlns:nml="http://morphml.org/networkml/schema"
xmlns:meta="http://morphml.org/metadata/schema"
xmlns:bio="http://morphml.org/biophysics/schema"
xmlns:cml="http://morphml.org/channelml/schema"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://morphml.org/neuroml/schema NeuroML_Level2_v1.6.xsd"
name = "NeuroML Level 2 file exported from NEURON"
lengthUnits="micron">
<meta:notes>NeuroML Level 2 file generated by NEURON 6.1 ModelViewer
Authors: Michael Hines, Sushil Kambampati and Padraig Gleeson, Yale University and UCL.
Aditya Gilra, NCBS Bangalore modified this for use in his Olfactory Bulb model and also added connectivity information</meta:notes>
<cells>
<cell name="mitral">
<meta:notes>Cell: Mitral_0 exported from NEURON ModelView</meta:notes>
<segments xmlns="http://morphml.org/morphml/schema"> <!-- Changing namespace from neuroml to morphml-->
<segment id="0" name = "Seg0_soma" cable = "0">
<proximal x="0" y="0" z="0" diameter="20"/>
<distal x="0" y="0" z="20" diameter="20"/>
</segment>
<segment id="24" name = "Seg0_hillock" parent="0" cable = "24"> <!-- Connected at 0 on parent section: Mitral[0].soma -->
<proximal x="0" y="0" z="0" diameter="260"/>
<distal x="0" y="0" z="-5" diameter="260"/>
</segment>
<segment id="3" name = "Seg0_secden_1" parent="0" cable = "3"> <!-- Connected at 0 on parent section: Mitral[0].soma -->
<proximal x="0" y="0" z="0" diameter="2"/>
<distal x="0" y="-500" z="0" diameter="2"/>
</segment>
<segment id="2" name = "Seg0_secden_0" parent="0" cable = "2"> <!-- Connected at 0 on parent section: Mitral[0].soma -->
<proximal x="0" y="0" z="0" diameter="2"/>
<distal x="0" y="500" z="0" diameter="2"/>
</segment>
<segment id="1" name = "Seg0_priden" parent="0" cable = "1"> <!-- Parent section: Mitral[0].soma -->
<proximal x="0" y="0" z="20" diameter="3"/>
<distal x="0" y="0" z="320" diameter="3"/>
</segment>
<segment id="25" name = "Seg0_initialseg" parent="24" cable = "25"> <!-- Parent section: Mitral[0].hillock -->
<proximal x="0" y="0" z="-5" diameter="1.5"/>
<distal x="0" y="0" z="-35" diameter="1.5"/>
</segment>
<segment id="23" name = "Seg0_tuftden_19" parent="1" cable = "23"> <!-- Parent section: Mitral[0].priden -->
<proximal x="0" y="0" z="320" diameter="0.4"/>
<distal x="284.324" y="-92.3841" z="345" diameter="0.4"/>
</segment>
<segment id="22" name = "Seg0_tuftden_18" parent="1" cable = "22"> <!-- Parent section: Mitral[0].priden -->
<proximal x="0" y="0" z="320" diameter="0.4"/>
<distal x="241.86" y="-175.723" z="345" diameter="0.4"/>
</segment>
<segment id="21" name = "Seg0_tuftden_17" parent="1" cable = "21"> <!-- Parent section: Mitral[0].priden -->
<proximal x="0" y="0" z="320" diameter="0.4"/>
<distal x="175.721" y="-241.862" z="345" diameter="0.4"/>
</segment>
<segment id="20" name = "Seg0_tuftden_16" parent="1" cable = "20"> <!-- Parent section: Mitral[0].priden -->
<proximal x="0" y="0" z="320" diameter="0.4"/>
<distal x="92.3814" y="-284.325" z="345" diameter="0.4"/>
</segment>
<segment id="19" name = "Seg0_tuftden_15" parent="1" cable = "19"> <!-- Parent section: Mitral[0].priden -->
<proximal x="0" y="0" z="320" diameter="0.4"/>
<distal x="-0.00118996" y="-298.957" z="345" diameter="0.4"/>
</segment>
<segment id="18" name = "Seg0_tuftden_14" parent="1" cable = "18"> <!-- Parent section: Mitral[0].priden -->
<proximal x="0" y="0" z="320" diameter="0.4"/>
<distal x="-92.3837" y="-284.324" z="345" diameter="0.4"/>
</segment>
<segment id="17" name = "Seg0_tuftden_13" parent="1" cable = "17"> <!-- Parent section: Mitral[0].priden -->
<proximal x="0" y="0" z="320" diameter="0.4"/>
<distal x="-175.723" y="-241.86" z="345" diameter="0.4"/>
</segment>
<segment id="16" name = "Seg0_tuftden_12" parent="1" cable = "16"> <!-- Parent section: Mitral[0].priden -->
<proximal x="0" y="0" z="320" diameter="0.4"/>
<distal x="-241.861" y="-175.721" z="345" diameter="0.4"/>
</segment>
<segment id="15" name = "Seg0_tuftden_11" parent="1" cable = "15"> <!-- Parent section: Mitral[0].priden -->
<proximal x="0" y="0" z="320" diameter="0.4"/>
<distal x="-284.325" y="-92.3818" z="345" diameter="0.4"/>
</segment>
<segment id="14" name = "Seg0_tuftden_10" parent="1" cable = "14"> <!-- Parent section: Mitral[0].priden -->
<proximal x="0" y="0" z="320" diameter="0.4"/>
<distal x="-298.957" y="0.000793308" z="345" diameter="0.4"/>
</segment>
<segment id="13" name = "Seg0_tuftden_9" parent="1" cable = "13"> <!-- Parent section: Mitral[0].priden -->
<proximal x="0" y="0" z="320" diameter="0.4"/>
<distal x="-284.324" y="92.3833" z="345" diameter="0.4"/>
</segment>
<segment id="12" name = "Seg0_tuftden_8" parent="1" cable = "12"> <!-- Parent section: Mitral[0].priden -->
<proximal x="0" y="0" z="320" diameter="0.4"/>
<distal x="-241.861" y="175.723" z="345" diameter="0.4"/>
</segment>
<segment id="11" name = "Seg0_tuftden_7" parent="1" cable = "11"> <!-- Parent section: Mitral[0].priden -->
<proximal x="0" y="0" z="320" diameter="0.4"/>
<distal x="-175.722" y="241.861" z="345" diameter="0.4"/>
</segment>
<segment id="10" name = "Seg0_tuftden_6" parent="1" cable = "10"> <!-- Parent section: Mitral[0].priden -->
<proximal x="0" y="0" z="320" diameter="0.4"/>
<distal x="-92.3822" y="284.325" z="345" diameter="0.4"/>
</segment>
<segment id="9" name = "Seg0_tuftden_5" parent="1" cable = "9"> <!-- Parent section: Mitral[0].priden -->
<proximal x="0" y="0" z="320" diameter="0.4"/>
<distal x="0.000396654" y="298.957" z="345" diameter="0.4"/>
</segment>
<segment id="8" name = "Seg0_tuftden_4" parent="1" cable = "8"> <!-- Parent section: Mitral[0].priden -->
<proximal x="0" y="0" z="320" diameter="0.4"/>
<distal x="92.3829" y="284.324" z="345" diameter="0.4"/>
</segment>
<segment id="7" name = "Seg0_tuftden_3" parent="1" cable = "7"> <!-- Parent section: Mitral[0].priden -->
<proximal x="0" y="0" z="320" diameter="0.4"/>
<distal x="175.722" y="241.861" z="345" diameter="0.4"/>
</segment>
<segment id="6" name = "Seg0_tuftden_2" parent="1" cable = "6"> <!-- Parent section: Mitral[0].priden -->
<proximal x="0" y="0" z="320" diameter="0.4"/>
<distal x="241.861" y="175.722" z="345" diameter="0.4"/>
</segment>
<segment id="5" name = "Seg0_tuftden_1" parent="1" cable = "5"> <!-- Parent section: Mitral[0].priden -->
<proximal x="0" y="0" z="320" diameter="0.4"/>
<distal x="284.325" y="92.3826" z="345" diameter="0.4"/>
</segment>
<segment id="4" name = "Seg0_tuftden_0" parent="1" cable = "4"> <!-- Parent section: Mitral[0].priden -->
<proximal x="0" y="0" z="320" diameter="0.4"/>
<distal x="298.957" y="0" z="345" diameter="0.4"/>
</segment>
</segments>
<cables xmlns="http://morphml.org/morphml/schema"> <!-- Changing namespace from neuroml to morphml-->
<cable id = "0" name = "soma" fractAlongParent = "0"/>
<cable id = "24" name = "hillock" fractAlongParent = "0"/>
<cable id = "3" name = "secden_1" fractAlongParent = "0"/>
<cable id = "2" name = "secden_0" fractAlongParent = "0"/>
<cable id = "1" name = "priden"/>
<cable id = "25" name = "initialseg"/>
<cable id = "23" name = "tuftden_19"/>
<cable id = "22" name = "tuftden_18"/>
<cable id = "21" name = "tuftden_17"/>
<cable id = "20" name = "tuftden_16"/>
<cable id = "19" name = "tuftden_15"/>
<cable id = "18" name = "tuftden_14"/>
<cable id = "17" name = "tuftden_13"/>
<cable id = "16" name = "tuftden_12"/>
<cable id = "15" name = "tuftden_11"/>
<cable id = "14" name = "tuftden_10"/>
<cable id = "13" name = "tuftden_9"/>
<cable id = "12" name = "tuftden_8"/>
<cable id = "11" name = "tuftden_7"/>
<cable id = "10" name = "tuftden_6"/>
<cable id = "9" name = "tuftden_5"/>
<cable id = "8" name = "tuftden_4"/>
<cable id = "7" name = "tuftden_3"/>
<cable id = "6" name = "tuftden_2"/>
<cable id = "5" name = "tuftden_1"/>
<cable id = "4" name = "tuftden_0"/>
<cablegroup name="all"> <!-- Replacing subset name ModelViewParmSubset_0 with all, as it contains all sections -->
<cable id = "0"/>
<cable id = "24"/>
<cable id = "3"/>
<cable id = "2"/>
<cable id = "1"/>
<cable id = "25"/>
<cable id = "23"/>
<cable id = "22"/>
<cable id = "21"/>
<cable id = "20"/>
<cable id = "19"/>
<cable id = "18"/>
<cable id = "17"/>
<cable id = "16"/>
<cable id = "15"/>
<cable id = "14"/>
<cable id = "13"/>
<cable id = "12"/>
<cable id = "11"/>
<cable id = "10"/>
<cable id = "9"/>
<cable id = "8"/>
<cable id = "7"/>
<cable id = "6"/>
<cable id = "5"/>
<cable id = "4"/>
</cablegroup>
<cablegroup name="ModelViewParmSubset_1">
<cable id = "0"/>
<cable id = "24"/>
<cable id = "3"/>
<cable id = "2"/>
<cable id = "1"/>
<cable id = "23"/>
<cable id = "22"/>
<cable id = "21"/>
<cable id = "20"/>
<cable id = "19"/>
<cable id = "18"/>
<cable id = "17"/>
<cable id = "16"/>
<cable id = "15"/>
<cable id = "14"/>
<cable id = "13"/>
<cable id = "12"/>
<cable id = "11"/>
<cable id = "10"/>
<cable id = "9"/>
<cable id = "8"/>
<cable id = "7"/>
<cable id = "6"/>
<cable id = "5"/>
<cable id = "4"/>
</cablegroup>
<cablegroup name="OneSecGrp_SectionRef_6"> <!-- Creating a group containing a single section... -->
<cable id = "25"/>
</cablegroup>
<cablegroup name="tuft">
<cable id = "23"/>
<cable id = "22"/>
<cable id = "21"/>
<cable id = "20"/>
<cable id = "19"/>
<cable id = "18"/>
<cable id = "17"/>
<cable id = "16"/>
<cable id = "15"/>
<cable id = "14"/>
<cable id = "13"/>
<cable id = "12"/>
<cable id = "11"/>
<cable id = "10"/>
<cable id = "9"/>
<cable id = "8"/>
<cable id = "7"/>
<cable id = "6"/>
<cable id = "5"/>
<cable id = "4"/>
</cablegroup>
</cables>
<biophysics units = "Physiological Units"> <!-- Note: values of cond dens are different in NEURON and phy units-->
<bio:mechanism name="pas" type="Channel Mechanism" passive_conductance="true">
<bio:parameter name="gmax" value="0.0833333">
<bio:group>ModelViewParmSubset_1</bio:group>
</bio:parameter>
<bio:parameter name="gmax" value="1">
<bio:group>OneSecGrp_SectionRef_6</bio:group> <!-- initialseg-->
</bio:parameter>
<bio:parameter name="e" value="-65">
<bio:group>all</bio:group>
</bio:parameter>
</bio:mechanism>
<bio:mechanism name="KA_ms" type="Channel Mechanism">
<bio:parameter name="gmax" value="4">
<bio:group>ModelViewParmSubset_1</bio:group>
</bio:parameter>
<bio:parameter name="gmax" value="80">
<bio:group>OneSecGrp_SectionRef_6</bio:group>
</bio:parameter>
</bio:mechanism>
<bio:mechanism name="KDR_ms" type="Channel Mechanism">
<bio:parameter name="gmax" value="0.1">
<bio:group>all</bio:group>
</bio:parameter>
</bio:mechanism>
<bio:mechanism name="Na_mit_ms" type="Channel Mechanism">
<bio:parameter name="gmax" value="40">
<bio:group>ModelViewParmSubset_1</bio:group>
</bio:parameter>
</bio:mechanism>
<bio:mechanism name="Na_mit_initialsegment_ms" type="Channel Mechanism">
<bio:parameter name="gmax" value="800">
<bio:group>OneSecGrp_SectionRef_6</bio:group>
</bio:parameter>
</bio:mechanism>
<bio:spec_capacitance>
<bio:parameter value="1.8">
<bio:group>all</bio:group>
</bio:parameter>
</bio:spec_capacitance>
<bio:spec_axial_resistance>
<bio:parameter value="0.15">
<bio:group>all</bio:group>
</bio:parameter>
</bio:spec_axial_resistance>
<bio:init_memb_potential>
<bio:parameter value="-65">
<bio:group>all</bio:group>
</bio:parameter>
</bio:init_memb_potential>
</biophysics>
<connectivity>
<nml:potential_syn_loc synapse_type="ORN_mitral" synapse_direction="post">
<nml:group>tuft</nml:group> <!-- glom tuft compartments -->
</nml:potential_syn_loc>
<nml:potential_syn_loc synapse_type="PG_mitral" synapse_direction="post">
<nml:group>tuft</nml:group> <!-- glom tuft compartments -->
</nml:potential_syn_loc>
</connectivity>
</cell>
</cells>
</neuroml>
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