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Mitral cell activity gating by respiration and inhibition in an olfactory bulb NN (Short et al 2016)
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Model File
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Accession:
183300
To explore interactions between respiration, inhibition, and olfaction, experiments using light to active channel rhodopsin in sensory neurons expressing Olfactory Marker Protein were performed in mice and modeled in silico. This archive contains NEURON models that were run on parallel computers to explore the interactions between varying strengths of respiratory activity and olfactory sensory neuron input and the roles of periglomerular, granule, and external tufted cells in shaping mitral cell responses.
Reference:
1 .
Short SM, Morse TM, McTavish TS, Shepherd GM, Verhagen JV (2016) Respiration Gates Sensory Input Responses in the Mitral Cell Layer of the Olfactory Bulb.
PLoS One
11
:e0168356
[
PubMed
]
Citations
Citation Browser
Model Information
(Click on a link to find other models with that property)
Model Type:
Realistic Network;
Neuron or other electrically excitable cell;
Brain Region(s)/Organism:
Olfactory bulb;
Cell Type(s):
Olfactory bulb main mitral GLU cell;
Olfactory bulb main interneuron periglomerular GABA cell;
Olfactory bulb main interneuron granule MC GABA cell;
Olfactory bulb main tufted cell external;
Channel(s):
Gap Junctions:
Receptor(s):
Gene(s):
Transmitter(s):
Simulation Environment:
NEURON;
Model Concept(s):
Activity Patterns;
Sensory processing;
Sensory coding;
Bursting;
Oscillations;
Olfaction;
Implementer(s):
Morse, Tom [Tom.Morse at Yale.edu];
Search NeuronDB
for information about:
Olfactory bulb main mitral GLU cell
;
Olfactory bulb main interneuron periglomerular GABA cell
;
Olfactory bulb main interneuron granule MC GABA cell
;
Files displayed below are from the
current
model analysis matlab code
matlab code created test data sets for experiment analysis code testing
event generator for table of prob to spikes supporting S2 fig
gui trace creation supporting information figure S3 B, C, D
matlab archive and diagnostic related
manual simulated breath writer
implementation
Download the displayed file
/
ShortEtAl2016
early_theta_version
event_generator
import
py
run_0
run_1
run_10
run_11
run_12
run_13
run_14
run_15
run_16
run_17
run_2
run_3
run_4
run_5
run_6
run_7
run_8
run_9
run_test
saved_sim_makers
tmp
VecStim
readme.html
readme.louise
readme.NSG
readme.specialcase.txt
ampanmda.mod
*
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Mitral cell activity gating by respiration and inhibition in an olfactory bulb NN (Short et al 2016)
Mitral cell activity gating by respiration and inhibition in an olfactory bulb NN (Short et al 2016)
cadecay.mod
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build_net_Shep_NSG20160825.hoc
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cells_volt_graphs.ses
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