Cl- homeostasis in immature hippocampal CA3 neurons (Kolbaev et al 2020)

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Accession:266811
Model used for the revision of the manuscript. Insertion of a passive Cl- flux and an active Cl-accumulation. Parameters adapted to match the properties of [Cl-]i determined in immature rat CA3 neurons in-vitro.
Reference:
1 . Kolbaev SN, Mohapatra N, Chen R, Lombardi A, Staiger JF, Luhmann HJ, Jedlicka P, Kilb W (2020) NKCC-1 mediated Cl- uptake in immature CA3 pyramidal neurons is sufficient to compensate phasic GABAergic inputs. Sci Rep 10:18399 [PubMed]
Citations  Citation Browser
Model Information (Click on a link to find other models with that property)
Model Type: Neuron or other electrically excitable cell; Synapse;
Brain Region(s)/Organism: Hippocampus;
Cell Type(s):
Channel(s): NKCC1;
Gap Junctions:
Receptor(s): GabaA;
Gene(s):
Transmitter(s): Gaba;
Simulation Environment: NEURON;
Model Concept(s): Synaptic Plasticity; Homeostasis;
Implementer(s): Jedlicka, Peter [jedlicka at em.uni-frankfurt.de]; Kilb, Werner [wkilb at uni-mainz.de];
Search NeuronDB for information about:  GabaA; NKCC1; Gaba;
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Models_Kolbaev et al Scientific Reports Revision
Readme.txt
asin.mod *
cldif_CA3_NKCC1_HCO3.mod *
gabaA_Cl_HCO3.mod *
tonic.mod *
vecevent.mod *
Add_tonic_Cl-current.hoc
anyl.m
Block-Tonic-Cl-current.ses
Cell_1_SciRep_ShrinkCorr.hoc
Determine_cl-Flux_w-o_NKCC1_rig.ses
Determine_R_input_rig.ses
Determine_tau_NKCC1_rig.ses
Display_Phasic-Cl-current.ses
Display_Phasic-Cl-current_for_Charge_Transfer.ses
Display_Phasic-Cl-current_forFreq.ses
Phasic_GABA_activity_Div_Freq.hoc
Phasic_GABA_activity_Div_gGABA.hoc
Phasic_GABA_activity_only_soma_Backregul.hoc
Phasic_GABA_activity_only_soma_Div_Freq.hoc
Phasic_GABA_activity_only_soma_Div_gGABA.hoc
Phasic_GABA_activity_only_soma_for_Charge_Transfer.hoc
Phasic_GABA_activity_only_soma_PlaceSynapsesForFigure.hoc
start_Add_Tonic_Cl-currents.hoc
start_Block_Tonic_Cl-currents.hoc
start_Phasic_Cl-currents.hoc
start_Phasic_Cl-currents_for _Change-transfer.hoc
start_Phasic_GABA_activity_Div_Freq.hoc
start_Phasic_GABA_activity_only_soma_Backregul.hoc
start_Phasic_GABA_activity_only_soma_Div_Freq.hoc
start_Phasic_GABA_activity_only_soma_Div_gGABA.hoc
Switch_off_tonic_Cl-current.hoc
                            
COMMENT
Modified Proddutur A, Yu J, Elgammal FS, Santhakumar V (2013)
Tonic Inhibition with changing Cl- concentration
ENDCOMMENT

NEURON{
	SUFFIX tonic
	USEION cl READ ecl WRITE icl VALENCE -1
	NONSPECIFIC_CURRENT ihco3
	RANGE  icl, leak, P, e,ihco3,ehco3 
	RANGE P, HCO3e, HCO3i, i
}

UNITS {
	(uS)  = (micromho)
	(nA)  = (nanoamp)
	(mV)  = (millivolt)
	(mM)    = (milli/liter)
	F 	  = (faraday) (coulombs)
	R     = (k-mole)  (joule/degC)
}


PARAMETER {
	leak    = 0.01 (siemens/cm2) <0, 1e9>
	P    = 0.18		: HCO3/Cl relative permeability
	celsius = 31    (degC)
	HCO3e   = 26	(mM)	: extracellular HCO3- concentration
	HCO3i   = 16	(mM)	: intracellular HCO3- concentration
}

ASSIGNED{
	icl (milliamp/cm2)
	i (milliamp/cm2)
	ihco3 (milliamp/cm2)
	v	(mV)		: postsynaptic voltage 
	e	(mV)		: reversal potential for GABAR	
	ecl	(mV)		: equilibrium potential for Cl-
    ehco3	(mV)		: equilibrium potential for HCO3-	
}

INITIAL { 

	ehco3 = log(HCO3i/HCO3e)*(1000)*(celsius + 273.15)*R/F
	e = P*ehco3 + (1-P)*ecl
}


BREAKPOINT {
	icl = (1-P)*leak*(v-ecl)
	ihco3 = P*leak*(v-ehco3)
	i = icl + ihco3
	e = P*ehco3 + (1-P)*ecl
}