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Realistic Microcircuits
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Parallel network simulations with NEURON (Migliore et al 2006)
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Accession:
64229
The NEURON simulation environment has been extended to support parallel network simulations. The performance of three published network models with very different spike patterns exhibits superlinear speedup on Beowulf clusters.
Reference:
1 .
Migliore M, Cannia C, Lytton WW, Markram H, Hines ML (2006) Parallel network simulations with NEURON.
J Comput Neurosci
21
:119-29
[
PubMed
]
Citations
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Model Information
(Click on a link to find other models with that property)
Model Type:
Realistic Network;
Brain Region(s)/Organism:
Cell Type(s):
Channel(s):
Gap Junctions:
Receptor(s):
Gene(s):
Transmitter(s):
Simulation Environment:
NEURON;
Model Concept(s):
Methods;
Implementer(s):
Hines, Michael [Michael.Hines at Yale.edu];
Download the displayed file
/
netmod
parbulbNet
README
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flushf.mod
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kA.mod
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kca.mod
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kfasttab.mod
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Lateral dendrodenditic inhibition in the Olfactory Bulb (David et al. 2008)
Mitral cell activity gating by respiration and inhibition in an olfactory bulb NN (Short et al 2016)
Olfactory Bulb Network (Davison et al 2003)
kM.mod
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2D model of olfactory bulb gamma oscillations (Li and Cleland 2017)
A two-layer biophysical olfactory bulb model of cholinergic neuromodulation (Li and Cleland 2013)
Lateral dendrodenditic inhibition in the Olfactory Bulb (David et al. 2008)
Lateral dendrodenditic inhibition in the Olfactory Bulb (David et al. 2008)
Mitral cell activity gating by respiration and inhibition in an olfactory bulb NN (Short et al 2016)
Olfactory Bulb Network (Davison et al 2003)
kslowtab.mod
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Other models using kslowtab.mod:
2D model of olfactory bulb gamma oscillations (Li and Cleland 2017)
A two-layer biophysical olfactory bulb model of cholinergic neuromodulation (Li and Cleland 2013)
Lateral dendrodenditic inhibition in the Olfactory Bulb (David et al. 2008)
Lateral dendrodenditic inhibition in the Olfactory Bulb (David et al. 2008)
Mitral cell activity gating by respiration and inhibition in an olfactory bulb NN (Short et al 2016)
Olfactory Bulb Network (Davison et al 2003)
lcafixed.mod
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Lateral dendrodenditic inhibition in the Olfactory Bulb (David et al. 2008)
Olfactory Bulb Network (Davison et al 2003)
nafast.mod
*
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Lateral dendrodenditic inhibition in the Olfactory Bulb (David et al. 2008)
Lateral dendrodenditic inhibition in the Olfactory Bulb (David et al. 2008)
Olfactory Bulb Network (Davison et al 2003)
nagran.mod
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nmdanet.mod
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2D model of olfactory bulb gamma oscillations (Li and Cleland 2017)
A two-layer biophysical olfactory bulb model of cholinergic neuromodulation (Li and Cleland 2013)
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Olfactory Bulb Network (Davison et al 2003)
bulb.hoc
calcisilag.hoc
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Olfactory Bulb Network (Davison et al 2003)
ddi_baseline.gnu
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Olfactory Bulb Network (Davison et al 2003)
ddi_baseline.ses
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Olfactory Bulb Network (Davison et al 2003)
experiment_ddi_baseline.hoc
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Olfactory Bulb Network (Davison et al 2003)
experiment_odour_baseline.hoc
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granule.tem
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Olfactory Bulb Network (Davison et al 2003)
init.hoc
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Olfactory Bulb Network (Davison et al 2003)
input.hoc
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Olfactory Bulb Network (Davison et al 2003)
input1
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Olfactory Bulb Network (Davison et al 2003)
mathslib.hoc
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mitral.tem
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Olfactory Bulb Network (Davison et al 2003)
modstat
mosinit.hoc
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Biophysical and phenomenological models of spike-timing dependent plasticity (Badoual et al. 2006)
Lateral dendrodenditic inhibition in the Olfactory Bulb (David et al. 2008)
Lateral dendrodenditic inhibition in the Olfactory Bulb (David et al. 2008)
Olfactory Bulb Network (Davison et al 2003)
odour_baseline.gnu
*
Other models using odour_baseline.gnu:
Olfactory Bulb Network (Davison et al 2003)
odour_baseline.ses
*
Other models using odour_baseline.ses:
Olfactory Bulb Network (Davison et al 2003)
par_batch1.hoc
par_bulb.hoc
par_calcisilag.hoc
par_experiment_ddi_baseline.hoc
par_granule.tem
par_init.hoc
par_input.hoc
par_mitral.tem
par_netpar.hoc
par_notes
parameters_ddi_baseline.hoc
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Olfactory Bulb Network (Davison et al 2003)
parameters_odour_baseline.hoc
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Olfactory Bulb Network (Davison et al 2003)
screenshot.png
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Olfactory Bulb Network (Davison et al 2003)
tabchannels.dat
*
Other models using tabchannels.dat:
2D model of olfactory bulb gamma oscillations (Li and Cleland 2017)
A two-layer biophysical olfactory bulb model of cholinergic neuromodulation (Li and Cleland 2013)
Lateral dendrodenditic inhibition in the Olfactory Bulb (David et al. 2008)
Lateral dendrodenditic inhibition in the Olfactory Bulb (David et al. 2008)
Olfactory Bulb Network (Davison et al 2003)
Olfactory bulb microcircuits model with dual-layer inhibition (Gilra & Bhalla 2015)
tabchannels.hoc
*
Other models using tabchannels.hoc:
Olfactory Bulb Network (Davison et al 2003)
test1.sh
