Citations for Large scale model of the olfactory bulb (Yu et al., 2013)

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Yu Y, McTavish TS, Hines ML, Shepherd GM, Valenti C, Migliore M (2013) Sparse distributed representation of odors in a large-scale olfactory bulb circuit. PLoS Comput Biol 9:e1003014 [PubMed]

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References and models that cite this paper

Arenkiel BR, Hasegawa H, Yi JJ, Larsen RS, Wallace ML, Philpot BD, Wang F, Ehlers MD (2011) Activity-induced remodeling of olfactory bulb microcircuits revealed by monosynaptic tracing. PLoS One 6:e29423 [Journal] [PubMed]
Arevian AC, Kapoor V, Urban NN (2008) Activity-dependent gating of lateral inhibition in the mouse olfactory bulb. Nat Neurosci 11:80-7 [Journal] [PubMed]
Assisi C, Stopfer M, Laurent G, Bazhenov M (2007) Adaptive regulation of sparseness by feedforward inhibition. Nat Neurosci 10:1176-84 [Journal] [PubMed]
Bienenstock EL, Cooper LN, Munro PW (1982) Theory for the development of neuron selectivity: orientation specificity and binocular interaction in visual cortex. J Neurosci 2:32-48 [PubMed]
Bischofberger J, Jonas P (1997) Action potential propagation into the presynaptic dendrites of rat mitral cells. J Physiol 504 ( Pt 2):359-65 [PubMed]
Cang J, Isaacson JS (2003) In vivo whole-cell recording of odor-evoked synaptic transmission in the rat olfactory bulb. J Neurosci 23:4108-16 [PubMed]
Carey RM, Wachowiak M (2011) Effect of sniffing on the temporal structure of mitral/tufted cell output from the olfactory bulb. J Neurosci 31:10615-26 [Journal] [PubMed]
Chen WR, Shen GY, Shepherd GM, Hines ML, Midtgaard J (2002) Multiple modes of action potential initiation and propagation in mitral cell primary dendrite. J Neurophysiol 88:2755-64 [Journal] [PubMed]
  • Olfactory Mitral cell: AP initiation modes (Chen et al 2002) [Model]
Chow SF, Wick SD, Riecke H (2012) Neurogenesis drives stimulus decorrelation in a model of the olfactory bulb. PLoS Comput Biol 8:e1002398 [Journal] [PubMed]
  • Olfactory bulb network: neurogenetic restructuring and odor decorrelation (Chow et al. 2012) [Model]
Christie JM, Schoppa NE, Westbrook GL (2001) Tufted cell dendrodendritic inhibition in the olfactory bulb is dependent on NMDA receptor activity. J Neurophysiol 85:169-73 [Journal] [PubMed]
David F, Linster C, Cleland TA (2008) Lateral dendritic shunt inhibition can regularize mitral cell spike patterning. J Comput Neurosci 25:25-38 [Journal] [PubMed]
  • Lateral dendrodenditic inhibition in the Olfactory Bulb (David et al. 2008) [Model]
Davison AP, Feng J, Brown D (2003) Dendrodendritic inhibition and simulated odor responses in a detailed olfactory bulb network model. J Neurophysiol 90:1921-35 [Journal] [PubMed]
  • Olfactory Bulb Network (Davison et al 2003) [Model]
Debarbieux F, Audinat E, Charpak S (2003) Action potential propagation in dendrites of rat mitral cells in vivo. J Neurosci 23:5553-60 [PubMed]
Dhawale AK, Hagiwara A, Bhalla US, Murthy VN, Albeanu DF (2010) Non-redundant odor coding by sister mitral cells revealed by light addressable glomeruli in the mouse. Nat Neurosci 13:1404-12 [Journal] [PubMed]
Egger V, Svoboda K, Mainen ZF (2003) Mechanisms of lateral inhibition in the olfactory bulb: efficiency and modulation of spike-evoked calcium influx into granule cells. J Neurosci 23:7551-8 [PubMed]
Egger V, Urban NN (2006) Dynamic connectivity in the mitral cell-granule cell microcircuit. Semin Cell Dev Biol 17:424-32 [Journal] [PubMed]
Ennis M, Linster C, Aroniadou-Anderjaska V, Ciombor K, Shipley MT (1998) Glutamate and synaptic plasticity at mammalian primary olfactory synapses. Ann N Y Acad Sci 855:457-66 [PubMed]
Fantana AL, Soucy ER, Meister M (2008) Rat olfactory bulb mitral cells receive sparse glomerular inputs. Neuron 59:802-14 [Journal] [PubMed]
Fuchs JL, Brown PB (1984) Two-point discriminability: relation to properties of the somatosensory system. Somatosens Res 2:163-9 [PubMed]
Gao Y, Strowbridge BW (2009) Long-term plasticity of excitatory inputs to granule cells in the rat olfactory bulb. Nat Neurosci 12:731-3 [Journal] [PubMed]
Giridhar S, Doiron B, Urban NN (2011) Timescale-dependent shaping of correlation by olfactory bulb lateral inhibition. Proc Natl Acad Sci U S A 108:5843-8 [Journal] [PubMed]
Gschwend O, Beroud J, Carleton A (2012) Encoding odorant identity by spiking packets of rate-invariant neurons in awake mice. PLoS One 7:e30155 [Journal] [PubMed]
Guthrie KM, Anderson AJ, Leon M, Gall C (1993) Odor-induced increases in c-fos mRNA expression reveal an anatomical "unit" for odor processing in olfactory bulb. Proc Natl Acad Sci U S A 90:3329-33 [PubMed]
HARTLINE HK, WAGNER HG, RATLIFF F (1956) Inhibition in the eye of Limulus. J Gen Physiol 39:651-73 [PubMed]
Haykin S (1994) Neural Networks: A Comprehensive Foundation :363-370
Hines ML, Carnevale NT (1997) The NEURON simulation environment. Neural Comput 9:1179-209 [PubMed]
Isaacson JS (2001) Mechanisms governing dendritic gamma-aminobutyric acid (GABA) release in the rat olfactory bulb. Proc Natl Acad Sci U S A 98:337-42 [Journal] [PubMed]
Jahr CE, Stevens CF (1990) A quantitative description of NMDA receptor-channel kinetic behavior. J Neurosci 10:1830-7 [PubMed]
Jahr CE, Stevens CF (1990) Voltage dependence of NMDA-activated macroscopic conductances predicted by single-channel kinetics. J Neurosci 10:3178-82 [PubMed]
Jia C, Chen WR, Shepherd GM (1999) Synaptic organization and neurotransmitters in the rat accessory olfactory bulb. J Neurophysiol 81:345-55 [Journal] [PubMed]
Junek S, Kludt E, Wolf F, Schild D (2010) Olfactory coding with patterns of response latencies. Neuron 67:872-84 [Journal] [PubMed]
Kapoor V, Urban NN (2006) Glomerulus-specific, long-latency activity in the olfactory bulb granule cell network. J Neurosci 26:11709-19 [Journal] [PubMed]
Kato HK, Chu MW, Isaacson JS, Komiyama T (2012) Dynamic sensory representations in the olfactory bulb: modulation by wakefulness and experience. Neuron 76:962-75 [Journal] [PubMed]
Kepecs A, Uchida N, Mainen ZF (2007) Rapid and precise control of sniffing during olfactory discrimination in rats. J Neurophysiol 98:205-13 [Journal] [PubMed]
Kim DH, Phillips ME, Chang AY, Patel HK, Nguyen KT, Willhite DC (2011) Lateral Connectivity in the Olfactory Bulb is Sparse and Segregated. Front Neural Circuits 5:5 [Journal] [PubMed]
Koulakov AA, Rinberg D (2011) Sparse incomplete representations: a potential role of olfactory granule cells. Neuron 72:124-36 [Journal] [PubMed]
KUFFLER SW (1953) Discharge patterns and functional organization of mammalian retina. J Neurophysiol 16:37-68 [Journal] [PubMed]
Linster C, Cleland TA (2009) Glomerular microcircuits in the olfactory bulb. Neural Netw 22:1169-73 [Journal] [PubMed]
Lowe G (2002) Inhibition of backpropagating action potentials in mitral cell secondary dendrites. J Neurophysiol 88:64-85 [Journal] [PubMed]
Luo SX, Axel R, Abbott LF (2010) Generating sparse and selective third-order responses in the olfactory system of the fly. Proc Natl Acad Sci U S A 107:10713-8 [Journal] [PubMed]
Ma TF, Zhao XL, Cai L, Zhang N, Ren SQ, Ji F, Tian T, Lu W (2012) Regulation of spike timing-dependent plasticity of olfactory inputs in mitral cells in the rat olfactory bulb. PLoS One 7:e35001 [Journal] [PubMed]
Margrie TW, Sakmann B, Urban NN (2001) Action potential propagation in mitral cell lateral dendrites is decremental and controls recurrent and lateral inhibition in the mammalian olfactory bulb. Proc Natl Acad Sci U S A 98:319-24 [Journal] [PubMed]
Matsuoka M, Kaba H, Moriya K, Yoshida-Matsuoka J, Costanzo RM, Norita M, Ichikawa M (2004) Remodeling of reciprocal synapses associated with persistence of long-term memory. Eur J Neurosci 19:1668-72 [Journal] [PubMed]
McTavish TS, Migliore M, Shepherd GM, Hines ML (2012) Mitral cell spike synchrony modulated by dendrodendritic synapse location. Front Comput Neurosci 6:3 [Journal] [PubMed]
  • Synchrony by synapse location (McTavish et al. 2012) [Model]
Migliore M, Hines ML, McTavish TS, Shepherd GM (2010) Functional roles of distributed synaptic clusters in the mitral-granule cell network of the olfactory bulb. Front Integr Neurosci 4:122 [Journal] [PubMed]
  • Olfactory bulb cluster formation (Migliore et al. 2010) [Model]
Migliore M, Hines ML, Shepherd GM (2005) The role of distal dendritic gap junctions in synchronization of mitral cell axonal output. J Comput Neurosci 18:151-61 [Journal] [PubMed]
  • Olfactory bulb mitral cell: synchronization by gap junctions (Migliore et al 2005) [Model]
Migliore M, Hoffman DA, Magee JC, Johnston D (1999) Role of an A-type K+ conductance in the back-propagation of action potentials in the dendrites of hippocampal pyramidal neurons. J Comput Neurosci 7:5-15 [Journal] [PubMed]
  • CA1 pyramidal neuron (Migliore et al 1999) [Model]
Migliore M, Inzirillo C, Shepherd GM (2007) Learning mechanism for column formation in the olfactory bulb. Front Integr Neurosci 1:12 [Journal] [PubMed]
  • Olfactory bulb mitral and granule cell column formation (Migliore et al. 2007) [Model]
Migliore M, Shepherd GM (2008) Dendritic action potentials connect distributed dendrodendritic microcircuits. J Comput Neurosci 24:207-21 [Journal] [PubMed]
  • Olfactory bulb mitral and granule cell: dendrodendritic microcircuits (Migliore and Shepherd 2008) [Model]
Mori K, Nagao H, Yoshihara Y (1999) The olfactory bulb: coding and processing of odor molecule information. Science 286:711-5 [PubMed]
Mori K, Nowycky MC, Shepherd GM (1981) Analysis of a long-duration inhibitory potential in mitral cells in the isolated turtle olfactory bulb. J Physiol 314:311-20 [PubMed]
Mori K, Takahashi YK, Igarashi KM, Yamaguchi M (2006) Maps of odorant molecular features in the Mammalian olfactory bulb. Physiol Rev 86:409-33 [Journal] [PubMed]
Nawroth JC, Greer CA, Chen WR, Laughlin SB, Shepherd GM (2007) An energy budget for the olfactory glomerulus. J Neurosci 27:9790-800 [Journal] [PubMed]
Nikonov AA, Caprio J (2005) Processing of odor information in the olfactory bulb and cerebral lobes. Chem Senses 30 Suppl 1:i317-8 [Journal] [PubMed]
Olsen SR, Bhandawat V, Wilson RI (2010) Divisive normalization in olfactory population codes. Neuron 66:287-99 [Journal] [PubMed]
Oswald AM, Schiff ML, Reyes AD (2006) Synaptic mechanisms underlying auditory processing. Curr Opin Neurobiol 16:371-6 [Journal] [PubMed]
Otsuka T, Kawaguchi Y (2009) Cortical inhibitory cell types differentially form intralaminar and interlaminar subnetworks with excitatory neurons. J Neurosci 29:10533-40 [Journal] [PubMed]
Patneau DK, Stripling JS (1992) Functional correlates of selective long-term potentiation in the olfactory cortex and olfactory bulb. Brain Res 585:219-28 [PubMed]
PHILLIPS CG, POWELL TP, SHEPHERD GM (1963) RESPONSES OF MITRAL CELLS TO STIMULATION OF THE LATERAL OLFACTORY TRACT IN THE RABBIT. J Physiol 168:65-88 [PubMed]
Pinato G, Midtgaard J (2005) Dendritic sodium spikelets and low-threshold calcium spikes in turtle olfactory bulb granule cells. J Neurophysiol 93:1285-94 [Journal] [PubMed]
Pinching AJ (1970) Synaptic connexions in the glomerular layer of the olfactory bulb. J Physiol 210:14P-15P [PubMed]
Royet JP, Distel H, Hudson R, Gervais R (1998) A re-estimation of the number of glomeruli and mitral cells in the olfactory bulb of rabbit. Brain Res 788:35-42 [PubMed]
Satou M, Hoshikawa R, Sato Y, Okawa K (2006) An in vitro study of long-term potentiation in the carp (Cyprinus carpio L.) olfactory bulb. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 192:135-50 [Journal] [PubMed]
Schoppa NE, Kinzie JM, Sahara Y, Segerson TP, Westbrook GL (1998) Dendrodendritic inhibition in the olfactory bulb is driven by NMDA receptors. J Neurosci 18:6790-802 [PubMed]
Schoppa NE, Westbrook GL (1999) Regulation of synaptic timing in the olfactory bulb by an A-type potassium current. Nat Neurosci 2:1106-13 [Journal] [PubMed]
Segev I (2006) What do dendrites and their synapses tell the neuron? J Neurophysiol 95:1295-7 [Journal] [PubMed]
Shepherd GM, Chen WR, Willhite D, Migliore M, Greer CA (2007) The olfactory granule cell: from classical enigma to central role in olfactory processing. Brain Res Rev 55:373-82 [Journal] [PubMed]
Shepherd GM, Greer CA (1998) Olfactory bulb. Synaptic Organization Of The Brain, Shepherd GM, ed. pp.159
Shusterman R, Smear MC, Koulakov AA, Rinberg D (2011) Precise olfactory responses tile the sniff cycle. Nat Neurosci 14:1039-44 [Journal] [PubMed]
Smear M, Shusterman R, O'Connor R, Bozza T, Rinberg D (2011) Perception of sniff phase in mouse olfaction. Nature 479:397-400 [Journal] [PubMed]
Stanton PK (1996) LTD, LTP, and the sliding threshold for long-term synaptic plasticity. Hippocampus 6:35-42 [Journal] [PubMed]
Stewart WB, Kauer JS, Shepherd GM (1979) Functional organization of rat olfactory bulb analysed by the 2-deoxyglucose method. J Comp Neurol 185:715-34 [Journal] [PubMed]
Tan J, Savigner A, Ma M, Luo M (2010) Odor information processing by the olfactory bulb analyzed in gene-targeted mice. Neuron 65:912-26 [Journal] [PubMed]
Vincis R, Gschwend O, Bhaukaurally K, Beroud J, Carleton A (2012) Dense representation of natural odorants in the mouse olfactory bulb. Nat Neurosci 15:537-9 [Journal] [PubMed]
Wang XY, McKenzie JS, Kemm RE (1996) Whole-cell K+ currents in identified olfactory bulb output neurones of rats. J Physiol 490 ( Pt 1):63-77 [Journal] [PubMed]
  • Olfactory Mitral Cell: I-A and I-K currents (Wang et al 1996) [Model]
Wellis DP, Kauer JS (1994) GABAergic and glutamatergic synaptic input to identified granule cells in salamander olfactory bulb. J Physiol 475:419-30 [PubMed]
Willhite DC, Nguyen KT, Masurkar AV, Greer CA, Shepherd GM, Chen WR (2006) Viral tracing identifies distributed columnar organization in the olfactory bulb. Proc Natl Acad Sci U S A 103:12592-7 [Journal] [PubMed]
Wilson DA, Sullivan RM, Gall CM, Guthrie KM (1996) NMDA-receptor modulation of lateral inhibition and c-fos expression in olfactory bulb. Brain Res 719:62-71 [PubMed]
Xiong W, Chen WR (2002) Dynamic gating of spike propagation in the mitral cell lateral dendrites. Neuron 34:115-26 [PubMed]
Xu F, Liu N, Kida I, Rothman DL, Hyder F, Shepherd GM (2003) Odor maps of aldehydes and esters revealed by functional MRI in the glomerular layer of the mouse olfactory bulb. Proc Natl Acad Sci U S A 100:11029-34 [Journal] [PubMed]
Yokoi M, Mori K, Nakanishi S (1995) Refinement of odor molecule tuning by dendrodendritic synaptic inhibition in the olfactory bulb. Proc Natl Acad Sci U S A 92:3371-5 [PubMed]
Zelles T, Boyd JD, Hardy AB, Delaney KR (2006) Branch-specific Ca2+ influx from Na+-dependent dendritic spikes in olfactory granule cells. J Neurosci 26:30-40 [Journal] [PubMed]
David F, Courtiol E, Buonviso N, Fourcaud-Trocmé N (2015) Competing Mechanisms of Gamma and Beta Oscillations in the Olfactory Bulb Based on Multimodal Inhibition of Mitral Cells Over a Respiratory Cycle. eNeuro [Journal] [PubMed]
  • Gamma-beta alternation in the olfactory bulb (David, Fourcaud-Trocmé et al., 2015) [Model]
Gilra A, Bhalla US (2015) Bulbar microcircuit model predicts connectivity and roles of interneurons in odor coding. PLoS One 10:e0098045 [Journal] [PubMed]
  • Olfactory bulb microcircuits model with dual-layer inhibition (Gilra & Bhalla 2015) [Model]
Kaplan BA, Lansner A (2014) A spiking neural network model of self-organized pattern recognition in the early mammalian olfactory system. Front Neural Circuits 8:5 [Journal] [PubMed]
  • Self-organized olfactory pattern recognition (Kaplan & Lansner 2014) [Model]
McIntyre AB, Cleland TA (2016) Biophysical constraints on lateral inhibition in the olfactory bulb. J Neurophysiol 115:2937-49 [Journal] [PubMed]
Migliore M, Cavarretta F, Hines ML, Shepherd GM (2014) Distributed organization of a brain microcircuit analyzed by three-dimensional modeling: the olfactory bulb. Front Comput Neurosci 8:50 [Journal] [PubMed]
  • 3D model of the olfactory bulb (Migliore et al. 2014) [Model]
Simões-de-Souza FM, Antunes G, Roque AC (2014) Electrical responses of three classes of granule cells of the olfactory bulb to synaptic inputs in different dendritic locations. Front Comput Neurosci 8:128 [Journal] [PubMed]
  • Granule Cells of the Olfactory Bulb (Simoes_De_Souza et al. 2014) [Model]
Viertel R, Borisyuk A (2019) A Computational model of the mammalian external tufted cell. J Theor Biol 462:109-121 [Journal] [PubMed]
  • External Tufted Cell Model (Ryan Viertel, Alla Borisyuk 2019) [Model]
Yu Y, Migliore M, Hines ML, Shepherd GM (2014) Sparse coding and lateral inhibition arising from balanced and unbalanced dendrodendritic excitation and inhibition. J Neurosci 34:13701-13 [Journal] [PubMed]
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