Citations for Ca2+ oscillations in single astrocytes (Lavrentovich and Hemkin 2008) (python) (Manninen et al 2017)

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Lavrentovich M, Hemkin S (2008) A mathematical model of spontaneous calcium(II) oscillations in astrocytes. J Theor Biol 251:553-60 [PubMed]

References and models cited by this paper

References and models that cite this paper

Aguado F, Espinosa-Parrilla JF, Carmona MA, Soriano E (2002) Neuronal activity regulates correlated network properties of spontaneous calcium transients in astrocytes in situ. J Neurosci 22:9430-44 [PubMed]
Allen V, Swigart P, Cheung R, Cockcroft S, Katan M (1997) Regulation of inositol lipid-specific phospholipase cdelta by changes in Ca2+ ion concentrations. Biochem J 327 ( Pt 2):545-52 [PubMed]
Araque A, Parpura V, Sanzgiri RP, Haydon PG (1998) Glutamate-dependent astrocyte modulation of synaptic transmission between cultured hippocampal neurons. Eur J Neurosci 10:2129-42 [PubMed]
Bezprozvanny I, Watras J, Ehrlich BE (1991) Bell-shaped calcium-response curves of Ins(1,4,5)P3- and calcium-gated channels from endoplasmic reticulum of cerebellum. Nature 351:751-4 [Journal] [PubMed]
Charles AC (1994) Glia-neuron intercellular calcium signaling. Dev Neurosci 16:196-206 [Journal] [PubMed]
Charles AC, Merrill JE, Dirksen ER, Sanderson MJ (1991) Intercellular signaling in glial cells: calcium waves and oscillations in response to mechanical stimulation and glutamate. Neuron 6:983-92 [PubMed]
Cornell-Bell AH, Finkbeiner SM, Cooper MS, Smith SJ (1990) Glutamate induces calcium waves in cultured astrocytes: long-range glial signaling. Science 247:470-3 [PubMed]
Dani JW, Chernjavsky A, Smith SJ (1992) Neuronal activity triggers calcium waves in hippocampal astrocyte networks. Neuron 8:429-40 [PubMed]
Dupont G, Berridge MJ, Goldbeter A (1991) Signal-induced Ca2+ oscillations: properties of a model based on Ca(2+)-induced Ca2+ release. Cell Calcium 12:73-85 [PubMed]
  • Ca(2+) oscillations based on Ca-induced Ca-release (Dupont et al 1991) [Model]
Dupont G, Goldbeter A (1993) One-pool model for Ca2+ oscillations involving Ca2+ and inositol 1,4,5-trisphosphate as co-agonists for Ca2+ release. Cell Calcium 14:311-22 [PubMed]
Falcke M (2004) Reading the patterns in living cells-the physics of Ca2+ signaling Advances In Physics 53:255-440
Fatatis A, Russell JT (1992) Spontaneous changes in intracellular calcium concentration in type I astrocytes from rat cerebral cortex in primary culture. Glia 5:95-104 [Journal] [PubMed]
Fellin T, Gomez-gonzalo M, Gobbo S, Carmignoto G, Haydon PG (2006) Astrocytic glutamate is not necessary for the generation of epileptiform neuronal activity in hippocampal slices J Neurosci 36:9312-9322
Goldbeter A, Dupont G, Berridge MJ (1990) Minimal model for signal-induced Ca2+ oscillations and for their frequency encoding through protein phosphorylation. Proc Natl Acad Sci U S A 87:1461-5 [PubMed]
Goto I, Kinoshita S, Natsume K (2004) The model of glutamate induced intracellular Ca2+ oscillation and intercellular Ca2+ wave in brain astrocytes Neurocomputing 58-60:461-467
Haak LL, Heller HC, van den Pol AN (1997) Metabotropic glutamate receptor activation modulates kainate and serotonin calcium response in astrocytes. J Neurosci 17:1825-37 [PubMed]
Harris-White ME, Zanotti SA, Frautschy SA, Charles AC (1998) Spiral intercellular calcium waves in hippocampal slice cultures. J Neurophysiol 79:1045-52 [Journal] [PubMed]
Höfer T (1999) Model of intercellular calcium oscillations in hepatocytes: synchronization of heterogeneous cells. Biophys J 77:1244-56 [Journal] [PubMed]
Höfer T, Venance L, Giaume C (2002) Control and plasticity of intercellular calcium waves in astrocytes: a modeling approach. J Neurosci 22:4850-9 [PubMed]
Holtzclaw LA, Pandhit S, Bare DJ, Mignery GA, Russell JT (2002) Astrocytes in adult rat brain express type 2 inositol 1,4,5-trisphosphate receptors. Glia 39:69-84 [Journal] [PubMed]
Houart G, Dupont G, Goldbeter A (1999) Bursting, chaos and birhythmicity originating from self-modulation of the inositol 1,4,5-trisphosphate signal in a model for intracellular Ca2+ oscillations. Bull Math Biol 61:507-30 [PubMed]
Kang J, Jiang L, Goldman SA, Nedergaard M (1998) Astrocyte-mediated potentiation of inhibitory synaptic transmission. Nat Neurosci 1:683-92 [Journal] [PubMed]
Kang M, Walker JW (2005) Protein kinase C delta and epsilon mediate positive inotropy in adult ventricular myocytes. J Mol Cell Cardiol 38:753-64 [Journal] [PubMed]
Manning TJ, Sontheimer H (1997) Spontaneous intracellular calcium oscillations in cortical astrocytes from a patient with intractable childhood epilepsy (Rasmussen's encephalitis). Glia 21:332-7 [PubMed]
Massey PV, Johnson BE, Moult PR, Auberson YP, Brown MW, Molnar E, Collingridge GL, Bashir ZI (2004) Differential roles of NR2A and NR2B-containing NMDA receptors in cortical long-term potentiation and long-term depression. J Neurosci 24:7821-8 [Journal] [PubMed]
McHugh D, Sharp EM, Scheuer T, Catterall WA (2000) Inhibition of cardiac L-type calcium channels by protein kinase C phosphorylation of two sites in the N-terminal domain. Proc Natl Acad Sci U S A 97:12334-8 [Journal] [PubMed]
Meyer T, Stryer L (1988) Molecular model for receptor-stimulated calcium spiking. Proc Natl Acad Sci U S A 85:5051-5 [PubMed]
Meyer T, Stryer L (1991) Calcium spiking. Annu Rev Biophys Biophys Chem 20:153-74 [Journal] [PubMed]
Nedergaard M (1994) Direct signaling from astrocytes to neurons in cultures of mammalian brain cells. Science 263:1768-71 [PubMed]
Nett WJ, Oloff SH, McCarthy KD (2002) Hippocampal astrocytes in situ exhibit calcium oscillations that occur independent of neuronal activity. J Neurophysiol 87:528-37 [Journal] [PubMed]
Newman EA, Zahs KR (1998) Modulation of neuronal activity by glial cells in the retina. J Neurosci 18:4022-8 [PubMed]
Pandey SC, Pandey GN, Smith TL (1996) Chronic ethanol effects on the expression of phospholipase C isozymes and Gq/11-protein in primary cultures of astrocytes. Alcohol 13:487-92 [PubMed]
Parri HR, Crunelli V (2003) The role of Ca2+ in the generation of spontaneous astrocytic Ca2+ oscillations. Neuroscience 120:979-92 [PubMed]
Parri HR, Gould TM, Crunelli V (2001) Spontaneous astrocytic Ca2+ oscillations in situ drive NMDAR-mediated neuronal excitation. Nat Neurosci 4:803-12 [Journal] [PubMed]
Pasti L, Volterra A, Pozzan T, Carmignoto G (1997) Intracellular calcium oscillations in astrocytes: a highly plastic, bidirectional form of communication between neurons and astrocytes in situ. J Neurosci 17:7817-30 [PubMed]
Pawelczyk T, Matecki A (1997) Structural requirements of phospholipase C delta1 for regulation by spermine, sphingosine and sphingomyelin. Eur J Biochem 248:459-65 [PubMed]
Penfield W (1927) The mechanism of cicatricial contraction in the brain Brain 50:499-517
Rebecchi MJ, Pentyala SN (2000) Structure, function, and control of phosphoinositide-specific phospholipase C. Physiol Rev 80:1291-335 [Journal] [PubMed]
Schatzmann HJ (1989) The calcium pump of the surface membrane and of the sarcoplasmic reticulum. Annu Rev Physiol 51:473-85 [Journal] [PubMed]
Sharp AH, Nucifora FC, Blondel O, Sheppard CA, Zhang C, Snyder SH, Russell JT, Ryugo DK, Ross CA (1999) Differential cellular expression of isoforms of inositol 1,4,5-triphosphate receptors in neurons and glia in brain. J Comp Neurol 406:207-20 [PubMed]
Simpson PB, Russell JT (1997) Role of sarcoplasmic/endoplasmic-reticulum Ca2+-ATPases in mediating Ca2+ waves and local Ca2+-release microdomains in cultured glia. Biochem J 325 ( Pt 1):239-47 [PubMed]
Tashiro A, Goldberg J, Yuste R (2002) Calcium oscillations in neocortical astrocytes under epileptiform conditions. J Neurobiol 50:45-55 [PubMed]
Tu H, Wang Z, Bezprozvanny I (2005) Modulation of mammalian inositol 1,4,5-trisphosphate receptor isoforms by calcium: a role of calcium sensor region. Biophys J 88:1056-69 [Journal] [PubMed]
Tu H, Wang Z, Nosyreva E, De Smedt H, Bezprozvanny I (2005) Functional characterization of mammalian inositol 1,4,5-trisphosphate receptor isoforms. Biophys J 88:1046-55 [Journal] [PubMed]
Venance L, Stella N, Glowinski J, Giaume C (1997) Mechanism involved in initiation and propagation of receptor-induced intercellular calcium signaling in cultured rat astrocytes. J Neurosci 17:1981-92 [PubMed]
Handy G, Taheri M, White JA, Borisyuk A (2017) Mathematical investigation of IP3-dependent calcium dynamics in astrocytes. J Comput Neurosci 42:257-273 [Journal] [PubMed]
  • A mathematical model of evoked calcium dynamics in astrocytes (Handy et al 2017) [Model]
Riera J, Hatanaka R, Ozaki T, Kawashima R (2011) Modeling the spontaneous Ca2+ oscillations in astrocytes: Inconsistencies and usefulness. J Integr Neurosci 10:439-73 [Journal] [PubMed]
  • Spontaneous calcium oscillations in single astrocytes (Riera et al. 2011) (Manninen et al 2017) [Model]
(49 refs)

Lavrentovich M, Hemkin S (2009) Corrigendum to “A mathematical model of spontaneous calcium(II) oscillations in astrocytes” [J. Theor. Biol. 251 (2008) 553–560] Journal of Theoretical Biology 260(2):332

References and models cited by this paper

References and models that cite this paper

(0 refs)

Manninen T, Havela R, Linne ML (2017) Reproducibility and comparability of computational models for astrocyte calcium excitability Front. Neuroinform.

References and models cited by this paper

References and models that cite this paper

Aguado F, Espinosa-Parrilla JF, Carmona MA, Soriano E (2002) Neuronal activity regulates correlated network properties of spontaneous calcium transients in astrocytes in situ. J Neurosci 22:9430-44 [PubMed]
Agulhon C, Fiacco TA, McCarthy KD (2010) Hippocampal short- and long-term plasticity are not modulated by astrocyte Ca2+ signaling. Science 327:1250-4 [Journal] [PubMed]
Allegrini P, Fronzoni L, Pirino D (2009) The influence of the astrocyte field on neuronal dynamics and synchronization. J Biol Phys 35:413-23 [Journal] [PubMed]
Atri A, Amundson J, Clapham D, Sneyd J (1993) A single-pool model for intracellular calcium oscillations and waves in the Xenopus laevis oocyte. Biophys J 65:1727-39 [Journal] [PubMed]
Bennett MR, Farnell L, Gibson WG (2008) Origins of blood volume change due to glutamatergic synaptic activity at astrocytes abutting on arteriolar smooth muscle cells. J Theor Biol 250:172-85 [Journal] [PubMed]
Bouchard KE, Aimone JB, Chun M, Dean T, Denker M, Diesmann M, Donofrio DD, Frank LM, Kasthuri N, Koch C, Ruebel O, Simon HD, Sommer FT, Prabhat (2016) High-Performance Computing in Neuroscience for Data-Driven Discovery, Integration, and Dissemination. Neuron 92:628-631 [Journal] [PubMed]
Cannon RC, Gewaltig MO, Gleeson P, Bhalla US, Cornelis H, Hines ML, Howell FW, Muller E, Stiles JR, Wils S, De Schutter E (2007) Interoperability of neuroscience modeling software: current status and future directions. Neuroinformatics 5:127-38 [Journal] [PubMed]
Cannon RC, Gleeson P, Crook S, Ganapathy G, Marin B, Piasini E, Silver RA (2014) LEMS: a language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2. Front Neuroinform 8:79 [Journal] [PubMed]
Crook S,et al (2013) Learning from the past: approaches for reproducibility in computational neuroscience 20 Years of Computational Neuroscience :73-102
De Pittà M, Brunel N, Volterra A (2016) Astrocytes: Orchestrating synaptic plasticity? Neuroscience 323:43-61 [Journal] [PubMed]
De Pittà M, Goldberg M, Volman V, Berry H, Ben-Jacob E (2009) Glutamate regulation of calcium and IP3 oscillating and pulsating dynamics in astrocytes. J Biol Phys 35:383-411 [Journal] [PubMed]
  • Glutamate-evoked Ca2+ oscillations in single astrocytes (De Pitta et al. 2009) (Manninen et al 2017) [Model]
De Pittà M, Volman V, Berry H, Parpura V, Volterra A, Ben-Jacob E (2012) Computational quest for understanding the role of astrocyte signaling in synaptic transmission and plasticity. Front Comput Neurosci 6:98 [Journal] [PubMed]
De Schutter E (2008) Why are computational neuroscience and systems biology so separate? PLoS Comput Biol 4:e1000078 [Journal] [PubMed]
De Young GW, Keizer J (1992) A single-pool inositol 1,4,5-trisphosphate-receptor-based model for agonist-stimulated oscillations in Ca2+ concentration. Proc Natl Acad Sci U S A 89:9895-9 [PubMed]
Di Garbo A, Barbi M, Chillemi S, Alloisio S, Nobile M (2007) Calcium signalling in astrocytes and modulation of neural activity. Biosystems 89:74-83 [Journal] [PubMed]
Dupont G, Croisier H (2010) Spatiotemporal organization of Ca dynamics: a modeling-based approach. HFSP J 4:43-51 [Journal] [PubMed]
Dupont G, Goldbeter A (1993) One-pool model for Ca2+ oscillations involving Ca2+ and inositol 1,4,5-trisphosphate as co-agonists for Ca2+ release. Cell Calcium 14:311-22 [PubMed]
Dupont G, Lokenye EF, Challiss RA (2011) A model for Ca2+ oscillations stimulated by the type 5 metabotropic glutamate receptor: an unusual mechanism based on repetitive, reversible phosphorylation of the receptor. Biochimie 93:2132-8 [Journal] [PubMed]
  • Glutamate-evoked Ca2+ oscillations in single astrocytes (Modified from Dupont et al. 2011) [Model]
Fellin T, Ellenbogen JM, De Pittà M, Ben-Jacob E, Halassa MM (2012) Astrocyte regulation of sleep circuits: experimental and modeling perspectives. Front Comput Neurosci 6:65 [Journal] [PubMed]
Gleeson P, Crook S, Cannon RC, Hines ML, Billings GO, Farinella M, Morse TM, Davison AP, Ray S, Bhalla US, Barnes SR, Dimitrova YD, Silver RA (2010) NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail. PLoS Comput Biol 6:e1000815 [Journal] [PubMed]
Grillner S, Ip N, Koch C, Koroshetz W, Okano H, Polachek M, Poo MM, Sejnowski TJ (2016) Worldwide initiatives to advance brain research. Nat Neurosci 19:1118-22 [Journal] [PubMed]
Haustein MD, Kracun S, Lu XH, Shih T, Jackson-Weaver O, Tong X, Xu J, Yang XW, O'Dell TJ, Marvin JS, Ellisman MH, Bushong EA, Looger LL, Khakh BS (2014) Conditions and constraints for astrocyte calcium signaling in the hippocampal mossy fiber pathway. Neuron 82:413-29 [Journal] [PubMed]
Hines ML, Morse T, Migliore M, Carnevale NT, Shepherd GM (2004) ModelDB: A Database to Support Computational Neuroscience. J Comput Neurosci 17:7-11 [Journal] [PubMed]
Hituri K, Linne ML (2013) Comparison of models for IP3 receptor kinetics using stochastic simulations. PLoS One 8:e59618 [Journal] [PubMed]
  • IP3R model comparison (Hituri and Linne 2013) [Model]
Höfer T, Politi A, Heinrich R (2001) Intercellular Ca2+ wave propagation through gap-junctional Ca2+ diffusion: a theoretical study. Biophys J 80:75-87 [Journal] [PubMed]
Höfer T, Venance L, Giaume C (2002) Control and plasticity of intercellular calcium waves in astrocytes: a modeling approach. J Neurosci 22:4850-9 [PubMed]
Honsek SD, Walz C, Kafitz KW, Rose CR (2012) Astrocyte calcium signals at Schaffer collateral to CA1 pyramidal cell synapses correlate with the number of activated synapses but not with synaptic strength. Hippocampus 22:29-42 [Journal] [PubMed]
Houart G, Dupont G, Goldbeter A (1999) Bursting, chaos and birhythmicity originating from self-modulation of the inositol 1,4,5-trisphosphate signal in a model for intracellular Ca2+ oscillations. Bull Math Biol 61:507-30 [PubMed]
Jolivet R, Allaman I, Pellerin L, Magistretti PJ, Weber B (2010) Comment on recent modeling studies of astrocyte-neuron metabolic interactions. J Cereb Blood Flow Metab 30:1982-6 [Journal] [PubMed]
Lallouette J, De Pittà M, Ben-Jacob E, Berry H (2014) Sparse short-distance connections enhance calcium wave propagation in a 3D model of astrocyte networks. Front Comput Neurosci 8:45 [Journal] [PubMed]
Le Novère N, Bornstein B, Broicher A, Courtot M, Donizelli M, Dharuri H, Li L, Sauro H, Schilstra M, Shapiro B, Snoep JL, Hucka M (2006) BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems. Nucleic Acids Res 34:D689-91 [Journal] [PubMed]
Li YX, Rinzel J (1994) Equations for InsP3 receptor-mediated [Ca2+]i oscillations derived from a detailed kinetic model: a Hodgkin-Huxley like formalism. J Theor Biol 166:461-73 [Journal] [PubMed]
Linne ML, Jalonen TO (2014) Astrocyte-neuron interactions: from experimental research-based models to translational medicine. Prog Mol Biol Transl Sci 123:191-217 [Journal] [PubMed]
Lloyd CM, Halstead MD, Nielsen PF (2004) CellML: its future, present and past. Prog Biophys Mol Biol 85:433-50 [Journal] [PubMed]
Lloyd CM, Lawson JR, Hunter PJ, Nielsen PF (2008) The CellML Model Repository. Bioinformatics 24:2122-3 [Journal] [PubMed]
López-Caamal F, Oyarzún DA, Middleton RH, García MR (2014) Spatial Quantification of Cytosolic Ca²? Accumulation in Nonexcitable Cells: An Analytical Study. IEEE/ACM Trans Comput Biol Bioinform 11:592-603 [Journal] [PubMed]
Manninen T, Hituri K, Kotaleski JH, Blackwell KT, Linne ML (2010) Postsynaptic signal transduction models for long-term potentiation and depression. Front Comput Neurosci 4:152 [Journal] [PubMed]
Manninen T, Hituri K, Toivari E, Linne ML (2011) Modeling signal transduction leading to synaptic plasticity: evaluation and comparison of five models. EURASIP J Bioinform Syst Biol 2011:797250 [Journal] [PubMed]
Manninen T,Havela R,Linne ML (2017) Computational models of astrocytes and astrocyte interactions: Characterization, reproducibility, and future perspectives Computational Glioscience, De_Pitta M:Berry H, ed.
Markram H, Muller E, Ramaswamy S, Reimann MW, Abdellah M, Sanchez CA, Ailamaki A, Alonso-Nanclares L, Antille N, Arsever S, Kahou GA, Berger TK, Bilgili A, Buncic N, Chalimourda A, Chindemi G, Courcol JD, Delalondre F, Delattre V, Druckmann S, Dumusc R, Dynes J, Eilemann S, Gal E, Gevaert ME, Ghobril JP, Gidon A, Graham JW, Gupta A, Haenel V, Hay E, Heinis T, Hernando JB, Hines M, Kanari L, Keller D, Kenyon J, Khazen G, Kim Y, King JG, Kisvarday Z, Kumbhar P, Lasserre S, Le Bé JV, Magalhães BR, Merchán-Pérez A, Meystre J, Morrice BR, Muller J, Muñoz-Céspedes A, Muralidhar S, Muthurasa K, Nachbaur D, Newton TH, Nolte M, Ovcharenko A, Palacios J, Pastor L, Perin R, Ranjan R, Riachi I, Rodríguez JR, Riquelme JL, Rössert C, Sfyrakis K, Shi Y, Shillcock JC, Silberberg G, Silva R, Tauheed F, Telefont M, Toledo-Rodriguez M, Tränkler T, Van Geit W, Díaz JV, Walker R, Wang Y, Zaninetta SM (2015) Reconstruction and Simulation of Neocortical Microcircuitry. Cell 163:456-92 [Journal] [PubMed]
  • The neocortical microcircuit collaboration portal (Markram et al. 2015) [Model]
Migliore M, Morse TM, Davison AP, Marenco L, Shepherd GM, Hines ML (2003) ModelDB: making models publicly accessible to support computational neuroscience. Neuroinformatics 1:135-9 [Journal] [PubMed]
Min R, Santello M, Nevian T (2012) The computational power of astrocyte mediated synaptic plasticity. Front Comput Neurosci 6:93 [Journal] [PubMed]
Nadkarni S, Jung P (2003) Spontaneous oscillations of dressed neurons: a new mechanism for epilepsy? Phys Rev Lett 91:268101 [Journal] [PubMed]
Nash MS, Schell MJ, Atkinson PJ, Johnston NR, Nahorski SR, Challiss RA (2002) Determinants of metabotropic glutamate receptor-5-mediated Ca2+ and inositol 1,4,5-trisphosphate oscillation frequency. Receptor density versus agonist concentration. J Biol Chem 277:35947-60 [Journal] [PubMed]
Navarrete M, Perea G, Maglio L, Pastor J, García de Sola R, Araque A (2013) Astrocyte calcium signal and gliotransmission in human brain tissue. Cereb Cortex 23:1240-6 [Journal] [PubMed]
Nordlie E, Gewaltig MO, Plesser HE (2009) Towards reproducible descriptions of neuronal network models. PLoS Comput Biol 5:e1000456 [Journal] [PubMed]
Parri HR, Crunelli V (2003) The role of Ca2+ in the generation of spontaneous astrocytic Ca2+ oscillations. Neuroscience 120:979-92 [PubMed]
Parri HR, Gould TM, Crunelli V (2001) Spontaneous astrocytic Ca2+ oscillations in situ drive NMDAR-mediated neuronal excitation. Nat Neurosci 4:803-12 [Journal] [PubMed]
Pettinen A, Aho T, Smolander OP, Manninen T, Saarinen A, Taattola KL, Yli-Harja O, Linne ML (2005) Simulation tools for biochemical networks: evaluation of performance and usability. Bioinformatics 21:357-63 [Journal] [PubMed]
Postnov DE, Koreshkov RN, Brazhe NA, Brazhe AR, Sosnovtseva OV (2009) Dynamical patterns of calcium signaling in a functional model of neuron-astrocyte networks. J Biol Phys 35:425-45 [Journal] [PubMed]
Riera J, Hatanaka R, Ozaki T, Kawashima R (2011) Modeling the spontaneous Ca2+ oscillations in astrocytes: Inconsistencies and usefulness. J Integr Neurosci 10:439-73 [Journal] [PubMed]
  • Spontaneous calcium oscillations in single astrocytes (Riera et al. 2011) (Manninen et al 2017) [Model]
Riera J, Hatanaka R, Uchida T, Ozaki T, Kawashima R (2011) Quantifying the uncertainty of spontaneous Ca2+ oscillations in astrocytes: particulars of Alzheimer's disease. Biophys J 101:554-64 [Journal] [PubMed]
  • Spontaneous calcium oscillations in single astrocytes (Riera et al. 2011) (Manninen et al 2017) [Model]
Roth BJ, Yagodin SV, Holtzclaw L, Russell JT (1995) A mathematical model of agonist-induced propagation of calcium waves in astrocytes. Cell Calcium 17:53-64 [PubMed]
Shuai JW, Jung P (2002) Stochastic properties of Ca(2+) release of inositol 1,4,5-trisphosphate receptor clusters. Biophys J 83:87-97 [Journal] [PubMed]
Stevens JL, Elver M, Bednar JA (2013) An automated and reproducible workflow for running and analyzing neural simulations using Lancet and IPython Notebook. Front Neuroinform 7:44 [Journal] [PubMed]
Teeters JL, Harris KD, Millman KJ, Olshausen BA, Sommer FT (2008) Data sharing for computational neuroscience. Neuroinformatics 6:47-55 [Journal] [PubMed]
Tewari S, Parpura V (2013) A possible role of astrocytes in contextual memory retrieval: An analysis obtained using a quantitative framework. Front Comput Neurosci 7:145 [Journal] [PubMed]
Tewari S, Parpura V (2014) Data and model tango to aid the understanding of astrocyte-neuron signaling. Front Comput Neurosci 8:3 [Journal] [PubMed]
Topalidou M, Leblois A, Boraud T, Rougier NP (2015) A long journey into reproducible computational neuroscience. Front Comput Neurosci 9:30 [Journal] [PubMed]
Tsodyks MV, Markram H (1997) The neural code between neocortical pyramidal neurons depends on neurotransmitter release probability. Proc Natl Acad Sci U S A 94:719-23 [PubMed]
Volman V, Bazhenov M, Sejnowski TJ (2012) Computational models of neuron-astrocyte interaction in epilepsy. Front Comput Neurosci 6:58 [Journal] [PubMed]
Volterra A, Liaudet N, Savtchouk I (2014) Astrocyte Ca²? signalling: an unexpected complexity. Nat Rev Neurosci 15:327-35 [Journal] [PubMed]
Wade J, McDaid L, Harkin J, Crunelli V, Kelso S (2012) Self-repair in a bidirectionally coupled astrocyte-neuron (AN) system based on retrograde signaling. Front Comput Neurosci 6:76 [Journal] [PubMed]
Wade J, McDaid L, Harkin J, Crunelli V, Kelso S (2013) Biophysically based computational models of astrocyte ~ neuron coupling and their functional significance. Front Comput Neurosci 7:44 [Journal] [PubMed]
Waltemath D, Adams R, Bergmann FT, Hucka M, Kolpakov F, Miller AK, Moraru II, Nickerson D, Sahle S, Snoep JL, Le Novère N (2011) Reproducible computational biology experiments with SED-ML--the Simulation Experiment Description Markup Language. BMC Syst Biol 5:198 [Journal] [PubMed]
(72 refs)