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Dura-Bernal S, Li K, Neymotin SA, Francis JT, Principe JC, Lytton WW (2016) Restoring Behavior via Inverse Neurocontroller in a Lesioned Cortical Spiking Model Driving a Virtual Arm. Front Neurosci 10:28 [PubMed]

   Cortical model with reinforcement learning drives realistic virtual arm (Dura-Bernal et al 2015)

References and models cited by this paper

References and models that cite this paper

Alstermark B, Isa T (2012) Circuits for skilled reaching and grasping. Annu Rev Neurosci 35:559-78 [Journal] [PubMed]
Arle JE, Shils JL (2008) Motor cortex stimulation for pain and movement disorders. Neurotherapeutics 5:37-49 [Journal] [PubMed]
Bensmaia SJ, Miller LE (2014) Restoring sensorimotor function through intracortical interfaces: progress and looming challenges. Nat Rev Neurosci 15:313-25 [Journal] [PubMed]
Calvin WH (1988) Neural Darwinism. The Theory of Neuronal Group Selection. Gerald M. Edelman. Basic Books, New York, 1987. xxii, 371 pp., illus. $29.95. Science 240:1802 [Journal] [PubMed]
Carandini M (2012) From circuits to behavior: a bridge too far? Nat Neurosci 15:507-9 [Journal] [PubMed]
Chen B, Zhao S, Zhu P, Príncipe JC (2012) Quantized kernel least mean square algorithm. IEEE Trans Neural Netw Learn Syst 23:22-32 [Journal] [PubMed]
Ching S, Ritt JT (2013) Control strategies for underactuated neural ensembles driven by optogenetic stimulation. Front Neural Circuits 7:54 [Journal] [PubMed]
Choi JS, DiStasio MM, Brockmeier AJ, Francis JT (2012) An electric field model for prediction of somatosensory (S1) cortical field potentials induced by ventral posterior lateral (VPL) thalamic microstimulation. IEEE Trans Neural Syst Rehabil Eng 20:161-9 [Journal] [PubMed]
Clark KL, Armstrong KM, Moore T (2011) Probing neural circuitry and function with electrical microstimulation. Proc Biol Sci 278:1121-30 [Journal] [PubMed]
Douglas RJ, Martin KA (2012) Behavioral architecture of the cortical sheet. Curr Biol 22:R1033-8 [Journal] [PubMed]
Dura-Bernal S, Chadderdon GL, Neymotin SA, Francis JT, Lytton WW (2014) Towards a real-time interface between a biomimetic model of sensorimotor cortex and a robotic arm. Pattern Recognit Lett 36:204-212 [Journal] [PubMed]
Dura-Bernal S,Kerr C,Neymotin S,Suter B,Shepherd G,Francis J,Lytton W (2015) Large-scale m1 microcircuit model with plastic input connections from biological pmd neurons used for prosthetic arm control 24th Annual Computational Neuroscience Meeting (CNS15) BMC Neuroscience
Featherstone R,Orin D (2000) Robot dynamics: Equations and algorithms In ICRA (International Conference Robotics and Automation) :826-834
Grahn PJ, Mallory GW, Berry BM, Hachmann JT, Lobel DA, Lujan JL (2014) Restoration of motor function following spinal cord injury via optimal control of intraspinal microstimulation: toward a next generation closed-loop neural prosthesis. Front Neurosci 8:296 [Journal] [PubMed]
Grammont F, Riehle A (1999) Precise spike synchronization in monkey motor cortex involved in preparation for movement. Exp Brain Res 128:118-22 [PubMed]
Gupta RK, Przekwas A (2013) Mathematical Models of Blast-Induced TBI: Current Status, Challenges, and Prospects. Front Neurol 4:59 [Journal] [PubMed]
Hampson RE, Gerhardt GA, Marmarelis V, Song D, Opris I, Santos L, Berger TW, Deadwyler SA (2012) Facilitation and restoration of cognitive function in primate prefrontal cortex by a neuroprosthesis that utilizes minicolumn-specific neural firing. J Neural Eng 9:056012 [Journal] [PubMed]
Hampson RE, Song D, Opris I, Santos LM, Shin DC, Gerhardt GA, Marmarelis VZ, Berger TW, Deadwyler SA (2013) Facilitation of memory encoding in primate hippocampus by a neuroprosthesis that promotes task-specific neural firing. J Neural Eng 10:066013 [Journal] [PubMed]
Harris KD, Shepherd GM (2015) The neocortical circuit: themes and variations. Nat Neurosci 18:170-81 [Journal] [PubMed]
Hartmann CJ, Chaturvedi A, Lujan JL (2015) Quantitative analysis of axonal fiber activation evoked by deep brain stimulation via activation density heat maps. Front Neurosci 9:28 [Journal] [PubMed]
Hatsopoulos N, Joshi J, O'Leary JG (2004) Decoding continuous and discrete motor behaviors using motor and premotor cortical ensembles. J Neurophysiol 92:1165-74 [Journal] [PubMed]
Hiscott R (2014) Darpa: On the hunt for neuroprosthetics to enhance memory Neurology Today
Holzbaur KR, Murray WM, Delp SL (2005) A model of the upper extremity for simulating musculoskeletal surgery and analyzing neuromuscular control. Ann Biomed Eng 33:829-40 [PubMed]
Hwang EJ, Shadmehr R (2005) Internal models of limb dynamics and the encoding of limb state. J Neural Eng 2:S266-78 [Journal] [PubMed]
Jackson A, Mavoori J, Fetz EE (2006) Long-term motor cortex plasticity induced by an electronic neural implant. Nature 444:56-60 [Journal] [PubMed]
Jefferson SC, Clayton ER, Donlan NA, Kozlowski DA, Jones TA, Adkins DL (2016) Cortical Stimulation Concurrent With Skilled Motor Training Improves Forelimb Function and Enhances Motor Cortical Reorganization Following Controlled Cortical Impact. Neurorehabil Neural Repair 30:155-8 [Journal] [PubMed]
Kerr CC, Neymotin SA, Chadderdon GL, Fietkiewicz CT, Francis JT, Lytton WW (2012) Electrostimulation as a prosthesis for repair of information flow in a computer model of neocortex. IEEE Trans Neural Syst Rehabil Eng 20:153-60 [Journal] [PubMed]
   Prosthetic electrostimulation for information flow repair in a neocortical simulation (Kerr 2012) [Model]
Kerr CC,O'Shea DJ,Goo W,Dura-Bernal S,Francis JT,Diester I,Kalanithi P,Deisseroth K,Shenoy KV (2014) Network-level effects of optogenetic stimulation in a computer model of macaque primary motor cortex BMC Neuroscience 15:p107
Klaes C, Shi Y, Kellis S, Minxha J, Revechkis B, Andersen RA (2014) A cognitive neuroprosthetic that uses cortical stimulation for somatosensory feedback. J Neural Eng 11:056024 [Journal] [PubMed]
Kleim JA, Bruneau R, VandenBerg P, MacDonald E, Mulrooney R, Pocock D (2003) Motor cortex stimulation enhances motor recovery and reduces peri-infarct dysfunction following ischemic insult. Neurol Res 25:789-93 [Journal] [PubMed]
Kocaturk M, Gulcur HO, Canbeyli R (2015) Toward Building Hybrid Biological/in silico Neural Networks for Motor Neuroprosthetic Control. Front Neurorobot 9:8 [Journal] [PubMed]
Koch C, Buice MA (2015) A Biological Imitation Game. Cell 163:277-80 [Journal] [PubMed]
Koralek AC, Jin X, Long JD, Costa RM, Carmena JM (2012) Corticostriatal plasticity is necessary for learning intentional neuroprosthetic skills. Nature 483:331-5 [Journal] [PubMed]
Kreuz T, Chicharro D, Greschner M, Andrzejak RG (2011) Time-resolved and time-scale adaptive measures of spike train synchrony. J Neurosci Methods 195:92-106 [Journal] [PubMed]
Kreuz T, Mulansky M, Bozanic N (2015) SPIKY: a graphical user interface for monitoring spike train synchrony. J Neurophysiol 113:3432-45 [Journal] [PubMed]
Lee G, Matsunaga A, Dura-Bernal S, Zhang W, Lytton WW, Francis JT, Fortes JA (2014) Towards real-time communication between in vivo neurophysiological data sources and simulator-based brain biomimetic models. J Comput Surg 3:1-23 [Journal] [PubMed]
Li K,Dura-Bernal S,Francis J,Lytton W,Principe J (2015) Repairing lesions via kernel adaptive inverse control in a biomimetic model of sensorimotor cortex Neural Engineering (NER), 2015 7th International IEEE/EMBS Conference. (Montpellier)
Li L, Park IM, Brockmeier A, Chen B, Seth S, Francis JT, Sanchez JC, Príncipe JC (2013) Adaptive inverse control of neural spatiotemporal spike patterns with a reproducing kernel Hilbert space (RKHS) framework. IEEE Trans Neural Syst Rehabil Eng 21:532-43 [Journal] [PubMed]
Ling G (2013) Newsmaker interview: Geoffrey Ling. DARPA aims to rebuild brains. Interview by Emily Underwood. Science 342:1029-30 [Journal] [PubMed]
Liu W,Pokharel P,Principe JC (2008) The kernel least mean square algorithm 56:543-554
Liu W,Principe JC,Haykin S (2010) Kernel Adaptive Filtering: A Comprehensive Introduction
Loeb GE, Tsianos GA (2015) Major remaining gaps in models of sensorimotor systems. Front Comput Neurosci 9:70 [Journal] [PubMed]
Lytton W,Stark J,Yamasaki D,Sober S (1999) Computer models of stroke recovery: Implications for neurorehabilitation. The Neuroscientist 5:100-111
Lytton WW, Stewart M (2006) Rule-based firing for network simulations. Neurocomputing 69:1160-1164
Mante V, Sussillo D, Shenoy KV, Newsome WT (2013) Context-dependent computation by recurrent dynamics in prefrontal cortex. Nature 503:78-84 [Journal] [PubMed]
Marcus G, Marblestone A, Dean T (2014) Neuroscience. The atoms of neural computation. Science 346:551-2 [Journal] [PubMed]
Markram H, Muller E, Ramaswamy S, Reimann MW, Abdellah M, Sanchez CA, Ailamaki A, Alonso-Nanclares L, Antille N, Arsever S, Kahou GA, Berger TK, Bilgili A, Buncic N, Chalimourda A, Chindemi G, Courcol JD, Delalondre F, Delattre V, Druckmann S, Dumusc R, Dynes J, Eilemann S, Gal E, Gevaert ME, Ghobril JP, Gidon A, Graham JW, Gupta A, Haenel V, Hay E, Heinis T, Hernando JB, Hines M, Kanari L, Keller D, Kenyon J, Khazen G, Kim Y, King JG, Kisvarday Z, Kumbhar P, Lasserre S, Le Bé JV, Magalhães BR, Merchán-Pérez A, Meystre J, Morrice BR, Muller J, Muñoz-Céspedes A, Muralidhar S, Muthurasa K, Nachbaur D, Newton TH, Nolte M, Ovcharenko A, Palacios J, Pastor L, Perin R, Ranjan R, Riachi I, Rodríguez JR, Riquelme JL, Rössert C, Sfyrakis K, Shi Y, Shillcock JC, Silberberg G, Silva R, Tauheed F, Telefont M, Toledo-Rodriguez M, Tränkler T, Van Geit W, Díaz JV, Walker R, Wang Y, Zaninetta SM (2015) Reconstruction and Simulation of Neocortical Microcircuitry. Cell 163:456-92 [Journal] [PubMed]
   The neocortical microcircuit collaboration portal (Markram et al. 2015) [Model]
McIntyre CC, Mori S, Sherman DL, Thakor NV, Vitek JL (2004) Electric field and stimulating influence generated by deep brain stimulation of the subthalamic nucleus. Clin Neurophysiol 115:589-95 [Journal] [PubMed]
Miranda RA, Casebeer WD, Hein AM, Judy JW, Krotkov EP, Laabs TL, Manzo JE, Pankratz KG, Pratt GA, Sanchez JC, Weber DJ, Wheeler TL, Ling GS (2015) DARPA-funded efforts in the development of novel brain-computer interface technologies. J Neurosci Methods 244:52-67 [Journal] [PubMed]
Nelson JT, Tepe V (2015) Neuromodulation research and application in the U.S. Department of Defense. Brain Stimul 8:247-52 [Journal] [PubMed]
Neymotin SA, Chadderdon GL, Kerr CC, Francis JT, Lytton WW (2013) Reinforcement learning of two-joint virtual arm reaching in a computer model of sensorimotor cortex. Neural Comput 25:3263-93 [Journal] [PubMed]
   Sensorimotor cortex reinforcement learning of 2-joint virtual arm reaching (Neymotin et al. 2013) [Model]
Neymotin SA, Lee H, Park E, Fenton AA, Lytton WW (2011) Emergence of physiological oscillation frequencies in a computer model of neocortex. Front Comput Neurosci 5:19 [Journal] [PubMed]
   Emergence of physiological oscillation frequencies in neocortex simulations (Neymotin et al. 2011) [Model]
Neymotin SA,Fenton AA,Lytton WW (2015) Tracking recurrence of correlation structure in neuronal ensembles
Nirenberg S, Pandarinath C (2012) Retinal prosthetic strategy with the capacity to restore normal vision. Proc Natl Acad Sci U S A 109:15012-7 [Journal] [PubMed]
Nishimura Y, Perlmutter SI, Fetz EE (2013) Restoration of upper limb movement via artificial corticospinal and musculospinal connections in a monkey with spinal cord injury. Front Neural Circuits 7:57 [Journal] [PubMed]
O'Doherty JE, Lebedev MA, Ifft PJ, Zhuang KZ, Shokur S, Bleuler H, Nicolelis MA (2011) Active tactile exploration using a brain-machine-brain interface. Nature 479:228-31 [Journal] [PubMed]
Overduin SA, d'Avella A, Carmena JM, Bizzi E (2012) Microstimulation activates a handful of muscle synergies. Neuron 76:1071-7 [Journal] [PubMed]
Overstreet CK, Klein JD, Helms Tillery SI (2013) Computational modeling of direct neuronal recruitment during intracortical microstimulation in somatosensory cortex. J Neural Eng 10:066016 [Journal] [PubMed]
   Direct recruitment of S1 pyramidal cells and interneurons via ICMS (Overstreet et al., 2013) [Model]
Paiva AR, Park I, Príncipe JC (2009) A reproducing kernel Hilbert space framework for spike train signal processing. Neural Comput 21:424-49 [Journal] [PubMed]
Palop JJ, Mucke L (2010) Amyloid-beta-induced neuronal dysfunction in Alzheimer's disease: from synapses toward neural networks. Nat Neurosci 13:812-8 [Journal] [PubMed]
Potjans TC, Diesmann M (2014) The cell-type specific cortical microcircuit: relating structure and activity in a full-scale spiking network model. Cereb Cortex 24:785-806 [Journal] [PubMed]
   A full-scale cortical microcircuit spiking network model (Shimoura et al 2018) [Model]
Ramanathan D, Conner JM, Tuszynski MH (2006) A form of motor cortical plasticity that correlates with recovery of function after brain injury. Proc Natl Acad Sci U S A 103:11370-5 [Journal] [PubMed]
Rickgauer JP, Deisseroth K, Tank DW (2014) Simultaneous cellular-resolution optical perturbation and imaging of place cell firing fields. Nat Neurosci 17:1816-24 [Journal] [PubMed]
Riehle A, Grün S, Diesmann M, Aertsen A (1997) Spike synchronization and rate modulation differentially involved in motor cortical function. Science 278:1950-3 [PubMed]
Rowan MS, Neymotin SA, Lytton WW (2014) Electrostimulation to reduce synaptic scaling driven progression of Alzheimer's disease. Front Comput Neurosci 8:39 [Journal] [PubMed]
   Electrostimulation to reduce synaptic scaling driven progression of Alzheimers (Rowan et al. 2014) [Model]
Rubino D, Robbins KA, Hatsopoulos NG (2006) Propagating waves mediate information transfer in the motor cortex. Nat Neurosci 9:1549-57 [Journal] [PubMed]
Sanchez J, Lytton W, Carmena J, Principe J, Fortes J, Barbour R, Francis J (2012) Dynamically repairing and replacing neural networks: using hybrid computational and biological tools. IEEE Pulse 3:57-9 [Journal] [PubMed]
Sanchez J, Tarigoppula A, Choi J, Marsh B, Chhatbar P (2011) Control of a center-out reaching task using a reinforcement learning brain-machine interface Neural Engineering (NER), 2011 5th International IEEE-EMBS Conference on. IEEE :525-528
Scholkopf B, Smola AJ (2001) Learning with kernels: Support vector machines, regularization, optimization, and beyond
Scholkopf B,Herbrich R,Smola AJ (2001) A generalized representer theorem Proc. 14th Annual Conf. on Comput. Learn. Theory 2111:416-426
Schutte LM,Rodgers MM,Zajac F,Glaser RM (1993) Improving the efficacy of electrical stimulation-induced leg cycle ergometry: an analysis based on a dynamic musculoskeletal model Rehabil. Eng. IEEE Trans. 1:109-125
Song W, Kerr CC, Lytton WW, Francis JT (2013) Cortical plasticity induced by spike-triggered microstimulation in primate somatosensory cortex. PLoS One 8:e57453 [Journal] [PubMed]
Spuler M,Nagel S,Rosenstiel W () A Spiking Neuronal Model Learning a Motor Control Task by Reinforcement Learning and Structural Synaptic Plasticity
Stanley GB (2013) Reading and writing the neural code. Nat Neurosci 16:259-63 [Journal] [PubMed]
Sussillo D, Churchland MM, Kaufman MT, Shenoy KV (2015) A neural network that finds a naturalistic solution for the production of muscle activity. Nat Neurosci 18:1025-33 [Journal] [PubMed]
Suter BA, Migliore M, Shepherd GM (2013) Intrinsic electrophysiology of mouse corticospinal neurons: a class-specific triad of spike-related properties. Cereb Cortex 23:1965-77 [Journal] [PubMed]
Suter BA, Yamawaki N, Borges K, Li X, Kiritani T, Hooks BM, Shepherd GM (2014) Neurophotonics applications to motor cortex research. Neurophotonics [Journal] [PubMed]
Tessadori J, Bisio M, Martinoia S, Chiappalone M (2012) Modular neuronal assemblies embodied in a closed-loop environment: toward future integration of brains and machines. Front Neural Circuits 6:99 [Journal] [PubMed]
Thelen DG, Anderson FC, Delp SL (2003) Generating dynamic simulations of movement using computed muscle control. J Biomech 36:321-8 [PubMed]
Van Acker GM, Amundsen SL, Messamore WG, Zhang HY, Luchies CW, Kovac A, Cheney PD (2013) Effective intracortical microstimulation parameters applied to primary motor cortex for evoking forelimb movements to stable spatial end points. J Neurophysiol 110:1180-9 [Journal] [PubMed]
Warden MR, Cardin JA, Deisseroth K (2014) Optical neural interfaces. Annu Rev Biomed Eng 16:103-29 [Journal] [PubMed]
Wolpert DM, Diedrichsen J, Flanagan JR (2011) Principles of sensorimotor learning. Nat Rev Neurosci 12:739-51 [Journal] [PubMed]
Zajac FE (1989) Muscle and tendon: properties, models, scaling, and application to biomechanics and motor control. Crit Rev Biomed Eng 17:359-411 [PubMed]
Dura-Bernal S, Neymotin SA, Kerr CC, Sivagnanam S, Majumdar A, Francis JT, Lytton WW (2017) Evolutionary algorithm optimization of biological learning parameters in a biomimetic neuroprosthesis. IBM Journal of Research and Development (Computational Neuroscience special issue) 61(2/3):6:1-6:14 [Journal]
   Motor system model with reinforcement learning drives virtual arm (Dura-Bernal et al 2017) [Model]
Neymotin SA, Dura-Bernal S, Lakatos P, Sanger TD, Lytton WW (2016) Multitarget Multiscale Simulation for Pharmacological Treatment of Dystonia in Motor Cortex. Front Pharmacol 7:157 [Journal] [PubMed]
   Multitarget pharmacology for Dystonia in M1 (Neymotin et al 2016) [Model]
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