| No. | Simulation Environment | Homepage | Local | Web Link | Total |
|---|
| 1 | AnimatLab v1 |  | 2 | 0 | 2 |
| 2 | BETSE (web link to model) | | 0 | 1 | 1 |
| 3 | BioPAX | | 0 | 1 | 1 |
| 4 | Brian | | 35 | 15 | 50 |
| 5 | Brian 2 | | 9 | 5 | 14 |
| 6 | C or C++ program | | 111 | 32 | 143 |
| 7 | C# | | 1 | 0 | 1 |
| 8 | CalC Calcium Calculator | | 1 | 7 | 8 |
| 9 | Catacomb | | 0 | 1 | 1 |
| 10 | CellDesigner | | 1 | 0 | 1 |
| 11 | CellExcite | | 1 | 0 | 1 |
| 12 | CellML | | 0 | 13 | 13 |
| 13 | Chemesis | | 2 | 0 | 2 |
| 14 | cirsiumNeuron | | 1 | 0 | 1 |
| 15 | CNrun | | 1 | 0 | 1 |
| 16 | COMSOL | | 1 | 2 | 3 |
| 17 | CONTENT | | 2 | 0 | 2 |
| 18 | COPASI | | 1 | 0 | 1 |
| 19 | CSIM | | 1 | 3 | 4 |
| 20 | Cython | | 2 | 0 | 2 |
| 21 | Dynamics Solver | | 1 | 0 | 1 |
| 22 | DynaSim | | 1 | 1 | 2 |
| 23 | EDLUT | | 3 | 0 | 3 |
| 24 | Emergent/PDP++ | | 3 | 0 | 3 |
| 25 | ERNST (Event Related Neuronal Simulation Tool) | | 0 | 1 | 1 |
| 26 | FORTRAN | | 12 | 1 | 13 |
| 27 | GENESIS | | 42 | 6 | 48 |
| 28 | GNUstep NeXTStep/OpenStep | | 1 | 0 | 1 |
| 29 | HSPICE | | 1 | 0 | 1 |
| 30 | IChMASCOT | | 0 | 0 | 0 |
| 31 | IDL | | 1 | 0 | 1 |
| 32 | IGOR Pro | | 3 | 0 | 3 |
| 33 | IonChannelLab | | 1 | 0 | 1 |
| 34 | Java | | 9 | 5 | 14 |
| 35 | Julia | | 1 | 0 | 1 |
| 36 | Julia (web link to model) | | 0 | 2 | 2 |
| 37 | KInNeSS | | 1 | 1 | 2 |
| 38 | KNPsim (web link to method) | | 0 | 1 | 1 |
| 39 | L-Neuron | | 0 | 0 | 0 |
| 40 | LCG | | 1 | 0 | 1 |
| 41 | LFPy | | 3 | 0 | 3 |
| 42 | LibRoadRunner | | 1 | 0 | 1 |
| 43 | Lua | | 1 | 0 | 1 |
| 44 | MadSim | | 2 | 0 | 2 |
| 45 | Mathematica | | 6 | 2 | 8 |
| 46 | MATLAB | | 301 | 70 | 371 |
| 47 | MCell | | 3 | 0 | 3 |
| 48 | MOOSE/PyMOOSE | | 3 | 1 | 4 |
| 49 | MVASpike | | 1 | 0 | 1 |
| 50 | MySQL | | 0 | 1 | 1 |
| 51 | NCS | | 1 | 0 | 1 |
| 52 | Nengo | | 2 | 0 | 2 |
| 53 | Neosim | | 0 | 0 | 0 |
| 54 | NEST | | 12 | 2 | 14 |
| 55 | NetPyNE | | 1 | 0 | 1 |
| 56 | Network | | 4 | 0 | 4 |
| 57 | NeuGen | | 0 | 0 | 0 |
| 58 | neuroConstruct | | 2 | 4 | 6 |
| 59 | NeuroML | | 3 | 5 | 8 |
| 60 | NEURON | | 655 | 43 | 698 |
| 61 | NeuronC | | 0 | 1 | 1 |
| 62 | NeuronetExperimenter | | 0 | 1 | 1 |
| 63 | Neuronify | | 0 | 1 | 1 |
| 64 | NEURONPM | | 0 | 1 | 1 |
| 65 | Neuronvisio | | 0 | 1 | 1 |
| 66 | NeuroRD | | 5 | 0 | 5 |
| 67 | ngspice | | 1 | 0 | 1 |
| 68 | NSL | | 0 | 0 | 0 |
| 69 | NSM | | 0 | 1 | 1 |
| 70 | Octave | | 2 | 0 | 2 |
| 71 | parplex | | 2 | 0 | 2 |
| 72 | Pascal | | 0 | 1 | 1 |
| 73 | Pascal/Delphi | | 2 | 0 | 2 |
| 74 | PCSIM | | 1 | 0 | 1 |
| 75 | PGENESIS | | 3 | 0 | 3 |
| 76 | PSICS | | 1 | 0 | 1 |
| 77 | PSpice | | 2 | 0 | 2 |
| 78 | PyNN | | 2 | 0 | 2 |
| 79 | Python | | 198 | 46 | 244 |
| 80 | QBasic/QuickBasic/Turbo Basic | | 2 | 0 | 2 |
| 81 | QuB | | 1 | 0 | 1 |
| 82 | R | | 4 | 2 | 6 |
| 83 | ReMoto | | 0 | 1 | 1 |
| 84 | SABER | | 1 | 0 | 1 |
| 85 | SBML | | 2 | 3 | 5 |
| 86 | SciLab | | 2 | 2 | 4 |
| 87 | Simulink | | 13 | 0 | 13 |
| 88 | SNNAP | | 21 | 0 | 21 |
| 89 | Snnet | | 0 | 0 | 0 |
| 90 | SpiNNaker | | 2 | 0 | 2 |
| 91 | Sspice Symbolic SPICE | | 1 | 0 | 1 |
| 92 | STEPS | | 7 | 2 | 9 |
| 93 | Surf-Hippo | | 0 | 0 | 0 |
| 94 | Synthesis | | 0 | 0 | 0 |
| 95 | The Virtual Brain | | 0 | 0 | 0 |
| 96 | The Virtual Brain (web link to model) | | 0 | 1 | 1 |
| 97 | The Virtual Mouse Brain (TVMB) | | 0 | 1 | 1 |
| 98 | Topographica | | 1 | 1 | 2 |
| 99 | VERTEX | | 1 | 0 | 1 |
| 100 | Virtual Cell | | 0 | 4 | 4 |
| 101 | XML | | 0 | 4 | 4 |
| 102 | XNBC | | 0 | 0 | 0 |
| 103 | XPP | | 100 | 15 | 115 |
| 104 | Yale HMM | | 1 | 0 | 1 |
