ModelDB: Models sorted by First Author

Models sorted by First Author

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Author	Reference	Model
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Ben-Porat H	Schaefer AT, Helmstaedter M, Schmitt AC, Bar-Yehuda D, Almog M, Ben-Porat H, Sakmann B, Korng (2007) [PubMed]	Correcting space clamp in dendrites (Schaefer et al. 2003 and 2007)
Ben-Shalom R	Ben-Shalom R, Keeshen CM,Berrios KN, An JY, Sanders SJ, Bender KJ (2017) [PubMed]	Pyramidal neurons with mutated SCN2A gene (Nav1.2) (Ben-Shalom et al 2017)
Ben-Shaul Y	Zylbertal A, Kahan A, Ben-Shaul Y, Yarom Y, Wagner S (2015) [PubMed]	AOB mitral cell: persistent activity without feedback (Zylbertal et al., 2015)
Ben-Shaul Y	Gorin M, Tsitoura C, Kahan A, Watznauer K, Drose DR, Arts M, Mathar R, O'Connor S, Hanganu-Op (2016) [PubMed]	Infraslow intrinsic rhythmogenesis in a subset of AOB projection neurons (Gorin et al 2016)
Benavides-Piccione R	Eyal G, Verhoog MB, Testa-Silva G, Deitcher Y, Lodder JC, Benavides-Piccione R, Morales J, DeFelipe J, de Kock CP, Mansvelder HD, Segev I (2016) [PubMed]	Human L2/3 pyramidal cells with low Cm values (Eyal et al. 2016)
Bencherif M	Maex R, Grinevich VP, Grinevich V, Budygin E, Bencherif M, Gutkin B (2014) [PubMed]	Nicotinic control of dopamine release in nucleus accumbens (Maex et al. 2014)
Bender KJ	Ben-Shalom R, Keeshen CM,Berrios KN, An JY, Sanders SJ, Bender KJ (2017) [PubMed]	Pyramidal neurons with mutated SCN2A gene (Nav1.2) (Ben-Shalom et al 2017)
Bengio Y	Rivest F, Kalaska JF, Bengio Y (2010) [PubMed]	Alternative time representation in dopamine models (Rivest et al. 2009)
Benison G	Benison G, Keizer J, Chalupa LM, Robinson DW (2001) [PubMed]	Retinal Ganglion Cell: I-Na,t (Benison et al 2001)
Benison G	Benison G, Keizer J, Chalupa LM, Robinson DW (2001) [PubMed]	Retinal Ganglion Cell: I-CaN and I-CaL (Benison et al. 2001)
Benison G	Benison G, Keizer J, Chalupa LM, Robinson DW (2001) [PubMed]	Retinal Ganglion Cell: I-A (Benison et al 2001)
Benoit-Marand M	Wolf JA, Moyer JT, Lazarewicz MT, Contreras D, Benoit-Marand M, O'Donnell P, Finkel LH (2005) [PubMed]	Afferent Integration in the NAcb MSP Cell (Wolf et al. 2005)
Benuskova L	Jedlicka P, Benuskova L, Abraham WC (2015) [PubMed]	Modeling dentate granule cells heterosynaptic plasticity using STDP-BCM rule (Jedlicka et al. 2015)
Berdahl CH	Berdahl CH (2010) [PubMed]	Borderline Personality Disorder (Berdahl, 2010)
Berends M	Sanders H, Berends M, Major G, Goldman MS, Lisman JE (2013) [PubMed]	NMDAR & GABAB/KIR Give Bistable Dendrites: Working Memory & Sequence Readout (Sanders et al., 2013)
Berger TK	Markram H, Muller E, Ramaswamy S, Reimann MW, Abdellah M, Sanchez CA, Ailamaki A, Alonso-Nanclares L, Antille N, Arsever S, Kahou GA, Berger TK, Bilgili A, Buncic N, Chalimourda A, Chindemi G, Courcol JD, Delalondre F, Delattre V, Druckmann S, Dumusc R, Dynes J, Eilemann S, Gal E, Gevaert ME, Ghobril JP, Gidon A, Graham JW, Gupta A, Haenel V, Hay E, Heinis T, Hernando JB, Hines M, Kanari L, Keller D, Kenyon J, Khazen G, Kim Y, King JG, Kisvarday Z, Kumbhar P, Lasserre S, Le Be JV, Magalhães BR, Merchan-Perez A, Meystre J, Morrice BR, Muller J, Muñoz-Cespedes A, et al. (2015) [PubMed]	The neocortical microcircuit collaboration portal (Markram et al. 2015)
Berger TK	Cali C, Berger TK, Pignatelli M, Carleton A, Markram H, Giugliano M (2008) [PubMed]	Inferring connection proximity in electrically coupled networks (Cali et al. 2007)
Berger TW	Allam SL, Bouteiller JM, Hu EY, Ambert N, Greget R, Bischoff S, Baudry M, Berger TW (2015) [PubMed]	Response of AMPA receptor kinetic model to glutamate release distance (Allam et al., 2015)
Berger TW	Keller AF, Bouteiller JC, Berger TW (2017) [PubMed]	A computational approach/model to explore NMDA receptors functions (Keller et al 2017)
Bergey GK	Anderson WS, Azhar F, Kudela P, Bergey GK, Franaszczuk PJ (2012) [PubMed]	Network model with neocortical architecture (Anderson et al 2007,2012; Azhar et al 2012)
Bergey GK	Anderson WS, Kudela P, Weinberg S, Bergey GK, Franaszczuk PJ (2009) [PubMed]	Network model with neocortical architecture (Anderson et al 2007,2012; Azhar et al 2012)
Bergey GK	Anderson WS, Kudela P, Cho J, Bergey GK, Franaszczuk PJ (2007) [PubMed]	Network model with neocortical architecture (Anderson et al 2007,2012; Azhar et al 2012)
Bergey GK	Anderson WS, Kudela P, Cho J, Bergey GK, Franaszczuk PJ (2007) [PubMed]	Studies of stimulus parameters for seizure disruption using NN simulations (Anderson et al. 2007)
Bergman H	Leblois A, Boraud T, Meissner W, Bergman H, Hansel D (2006) [PubMed]	A dynamical model of the basal ganglia (Leblois et al 2006)
Berke JD	Klaus A, Planert H, Hjorth J, Berke JD, Silberberg G, Kotaleski JH (2011) [PubMed]	Firing patterns in stuttering fast-spiking interneurons (Klaus et al. 2011)
Berkovic SF	Thomas EA, Reid CA, Berkovic SF, Petrou S (2009) [PubMed]	Epilepsy may be caused by very small functional changes in ion channels (Thomas et al. 2009)
Berkovic SF	Wimmer VC, Reid CA, Mitchell S, Richards KL, Scaf BB, Leaw BT, Hill EL, Royeck M, Horstmann M (2010) [PubMed]	Complex CA1-neuron to study AP initiation (Wimmer et al. 2010)
Bernard C	Naze S, Bernard C, Jirsa V (2015) [PubMed]	Multiscale modeling of epileptic seizures (Naze et al. 2015)
Bernard C	Melozzi F, Woodman MM, Jirsa VK, Bernard C (2017) [PubMed]	The Virtual Mouse Brain (TVMB) (Melozzi et al. 2017)
Bernard C	Marcelin B, Chauviere L, Becker A, Migliore M, Esclapez M, Bernard C (2009) [PubMed]	CA1 pyramidal neuron: h channel-dependent deficit of theta oscill. resonance (Marcelin et al. 2008)
Berridge MJ	Dupont G, Berridge MJ, Goldbeter A (1991) [PubMed]	Ca(2+) oscillations based on Ca-induced Ca-release (Dupont et al 1991)
Berry H	De Pittà M, Goldberg M, Volman V, Berry H, Ben-Jacob E (2009) [PubMed]	Glutamate-evoked Ca2+ oscillations in single astrocytes (De Pitta et al. 2009) (Manninen et al 2017)
Berry H	Cui Y, Prokin I, Xu H, Delord B, Genet S, Venance L, Berry H (2016) [PubMed]	Endocannabinoid dynamics gate spike-timing dependent depression and potentiation (Cui et al 2016)
Berry H	Genet S, Sabarly L, Guigon E, Berry H, Delord B (2010) [PubMed]	Dendritic signals command firing dynamics in a Cerebellar Purkinje Cell model (Genet et al. 2010)
Berry H	De Pittà M, Goldberg M, Volman V, Berry H, Ben-Jacob E (2010) [PubMed]	Glutamate-evoked Ca2+ oscillations in single astrocytes (De Pitta et al. 2009) (Manninen et al 2017)
Bers DM	Puglisi JL, Bers DM (2001) [PubMed]	A cardiac cell simulator (Puglisi and Bers 2001), applied to the QT interval (Busjahn et al 2004)
Berthoz A	Girard B, Tabareau N, Pham QC, Berthoz A, Slotine JJ (2008) [PubMed]	A contracting model of the basal ganglia (Girard et al. 2008)
Bertram R	Matveev V, Bertram R, Sherman A (2009) [PubMed]	Ca2+ current versus Ca2+ channel cooperativity of exocytosis (Matveev et al. 2009)
Bertram R	Vo T, Bertram R, Tabak J, Wechselberger M (2010) [PubMed]	Mixed mode oscillations as a mechanism for pseudo-plateau bursting (Vo et al. 2010)
Bertram R	Teka W, Tabak J, Vo T, Wechselberger M, Bertram R (2011) [PubMed]	The dynamics underlying pseudo-plateau bursting in a pituitary cell model (Teka et al. 2011)
Bertram R	Tabak J, Toporikova N, Freeman ME, Bertram R (2007) [PubMed]	Low dose of dopamine may stimulate prolactin secretion by increasing K currents (Tabak et al. 2006)
Bertram R	Bertram R, Egli M, Toporikova N, Freeman ME (2006) [PubMed]	Oxytocin and VIP involvement in prolactin secretion (Egli et al. 2004,2006, Bertram et al. 2006)
Bertram R	Egli M, Bertram R, Sellix MT, Freeman ME (2004) [PubMed]	Oxytocin and VIP involvement in prolactin secretion (Egli et al. 2004,2006, Bertram et al. 2006)
Bertram R	Matveev V, Bertram R, Sherman A (2006) [PubMed]	Facilitation model based on bound Ca2+ (Matveev et al. 2006)
Bertram R	Teka W, Tabak J, Bertram R (2012) [PubMed]	The relationship between two fast/slow analysis techniques for bursting oscill. (Teka et al. 2012)
Bertram R	Bertram R, Tabak J, Toporikova N, Freeman ME (2006) [PubMed]	Endothelin action on pituitary latotrophs (Bertram et al. 2006)
Bertram R	Egli M, Bertram R, Toporikova N, Sellix MT, Blanco W, Freeman ME (2006) [PubMed]	Oxytocin and VIP involvement in prolactin secretion (Egli et al. 2004,2006, Bertram et al. 2006)
Bertram R	Vo T, Tabak J, Bertram R, Wechselberger M (2014) [PubMed]	Understanding how fast activating K+ channels promote bursting in pituitary cells (Vo et al 2014)
Bertrand D	Edelstein SJ, Schaad O, Henry E, Bertrand D, Changeux JP (1996) [PubMed]	A nicotinic acetylcholine receptor kinetic model (Edelstein et al. 1996)
Berzhanskaya J	Berzhanskaya J, Chernyy N, Gluckman BJ, Schiff SJ, Ascoli GA (2013) [PubMed]	Modulation of hippocampal rhythms by electric fields and network topology (Berzhanskaya et al. 2013)
Best J	Rempe MJ, Best J, Terman D (2010) [PubMed]	Human sleep/wake cycle (Rempe et al. 2010)
Best JA	Roberts CB, Best JA, Suter KJ (2006) [PubMed]	Dendritic processing of excitatory synaptic input in GnRH neurons (Roberts et al. 2006)
Bettella F	Maki-Marttunen T, Halnes G, Devor A, Witoelar A, Bettella F, Djurovic S, Wang Y, Einevoll GT, Andreassen OA, Dale AM (2016) [PubMed]	Schiz.-linked gene effects on intrinsic single-neuron excitability (Maki-Marttunen et al. 2016)
Beuter A	Pascual A, Modolo J, Beuter A (2006) [PubMed]	Study of augmented Rubin and Terman 2004 deep brain stim. model in Parkinsons (Pascual et al. 2006)
Beverlin B	Beverlin B, Kakalios J, Nykamp D, Netoff TI (2011) [PubMed]	Epileptic seizure model with Morris-Lecar neurons (Beverlin and Netoff 2011)
Bezaire M	Bezaire M, Raikov I, Burk K, Armstrong C, Soltesz I (2016) [PubMed]	Hippocampal CA1 NN with spontaneous theta, gamma: full scale & network clamp (Bezaire et al 2016)
Bezaire MJ	Bezaire MJ, Raikov I, Burk K, Vyas D, Soltesz I (2016) [PubMed]	Hippocampal CA1 NN with spontaneous theta, gamma: full scale & network clamp (Bezaire et al 2016)
Bhalla US	Bhalla US (2011) [PubMed]	Multiscale interactions between chemical and electric signaling in LTP (Bhalla 2011)
Bhalla US	Gilra A, Bhalla US (2015) [PubMed]	Olfactory bulb microcircuits model with dual-layer inhibition (Gilra & Bhalla 2015)
Bhalla US	Bhalla US (2017) [PubMed]	Discrimination on behavioral time-scales mediated by reaction-diffusion in dendrites (Bhalla 2017)
Bhalla US	Ray S, Bhalla US (2008) [PubMed]	Moose/PyMOOSE: interoperable scripting in Python for MOOSE (Ray and Bhalla 2008)
Bhalla US	Bhalla US, Bower JM (1993) [PubMed]	Olfactory Mitral Cell (Bhalla, Bower 1993)
Bhalla US	Bhalla US, Bower JM (1993) [PubMed]	Granule Cells of the Olfactory Bulb (Simoes_De_Souza et al. 2014)
Bhalla US	Bhalla US, Iyengar R (1999) [PubMed]	Emergent properties of networks of biological signaling pathways (Bhalla, Iyengar 1999)
Bhattacharya A	Sen-Bhattacharya B, Serrano-Gotarredona T, Balassa L, Bhattacharya A, Stokes AB, Rowley A, Sugiarto I, Furber S (2017) [PubMed]	A spiking neural network model of the Lateral Geniculate Nucleus (Sen-Bhattacharya et al 2017)
Bhattacharya BS	Bhattacharya BS, Coyle D, Maguire LP (2011) [PubMed]	A Neural mass computational model of the Thalamocorticothalamic circuitry (Bhattacharya et al. 2011)
Bi GQ	Gerkin RC, Lau PM, Nauen DW, Wang YT, Bi GQ (2007) [PubMed]	STDP and NMDAR Subunits (Gerkin et al. 2007)
Bianchi D	Romani A, Marchetti C, Bianchi D, Leinekugel X, Poirazi P, Migliore M, Marie H (2013) [PubMed]	Amyloid-beta effects on release probability and integration at CA3-CA1 synapses (Romani et al. 2013)
Bianchi D	Bianchi D, De Michele P, Marchetti C, Tirozzi B, Cuomo S, Marie H, Migliore M (2014) [PubMed]	Effects of increasing CREB on storage and recall processes in a CA1 network (Bianchi et al. 2014)
Bianciardi M	Cassara AM, Hagberg GE, Bianciardi M, Migliore M, Maraviglia B (2008) [PubMed]	CA1 pyramidal neuron: calculation of MRI signals (Cassara et al. 2008)
Bibbig A	Traub RD, Contreras D, Cunningham MO, Murray H, Lebeau FE, Roopun A, Bibbig A, et al (2005) [PubMed]	Collection of simulated data from a thalamocortical network model (Glabska, Chintaluri, Wojcik 2017)
Bibbig A	Traub RD, Contreras D, Cunningham MO, Murray H, Lebeau FE, Roopun A, Bibbig A, et al (2005) [PubMed]	A single column thalamocortical network model (Traub et al 2005)
Bidani A	Amini B, Bidani A, Zwischenberger JB, Clark JW (2004) [PubMed]	Rat phrenic motor neuron (Amini et al 2004)
Bierwirth C	Stadler K, Bierwirth C, Stoenica L, Battefeld A, Reetz O, Mix E, Schuchmann S, Velmans T, Ros (2014) [PubMed]	Firing neocortical layer V pyramidal neuron (Reetz et al. 2014; Stadler et al. 2014)
Bijma F	van Ooyen A, Carnell A, de Ridder S, Tarigan B, Mansvelder HD, Bijma F, de Gunst M, van Pelt (2014) [PubMed]	NETMORPH: creates NNs with realistic neuron morphologies (Koene et al. 2009, van Ooyen et al. 2014)
Bilgili A	Markram H, Muller E, Ramaswamy S, Reimann MW, Abdellah M, Sanchez CA, Ailamaki A, Alonso-Nanclares L, Antille N, Arsever S, Kahou GA, Berger TK, Bilgili A, Buncic N, Chalimourda A, Chindemi G, Courcol JD, Delalondre F, Delattre V, Druckmann S, Dumusc R, Dynes J, Eilemann S, Gal E, Gevaert ME, Ghobril JP, Gidon A, Graham JW, Gupta A, Haenel V, Hay E, Heinis T, Hernando JB, Hines M, Kanari L, Keller D, Kenyon J, Khazen G, Kim Y, King JG, Kisvarday Z, Kumbhar P, Lasserre S, Le Be JV, Magalhães BR, Merchan-Perez A, Meystre J, Morrice BR, Muller J, Muñoz-Cespedes A, et al. (2015) [PubMed]	The neocortical microcircuit collaboration portal (Markram et al. 2015)
Bilgili A	Ramaswamy S, Courcol JD, Abdellah M, Adaszewski SR, Antille N, Arsever S, Atenekeng G, Bilgili A, Brukau Y, Chalimourda A, Chindemi G, Delalondre F, Dumusc R, Eilemann S, Gevaert ME, Gleeson P, Graham JW, Hernando JB, Kanari L, Katkov Y, Keller D, King JG, Ranjan R, Reimann MW, Rössert C, Shi Y, Shillcock JC, Telefont M, Van Geit W, Diaz JV, Walker R, Wang Y, Zaninetta SM, DeFelipe J, Hill SL, Muller J, Segev I, Schürmann F, Muller EB, Markram H (2015) [PubMed]	The neocortical microcircuit collaboration portal (Markram et al. 2015)
Binder MD	Powers RK, Dai Y, Bell BM, Percival DB, Binder MD (2005) [PubMed]	Contibutions of input and history to motoneuron output (Powers et al 2005)
Binzegger T	Anderson JC, Binzegger T, Kahana O, Martin KA, Segev I (1999) [PubMed]	Visual Cortex Neurons: Dendritic study (Anderson et al 1999)
Bischofberger J	Schmidt-Hieber C, Bischofberger J (2010) [PubMed]	Fast sodium channel gating in mossy fiber axons (Schmidt-Hieber et al. 2010)
Bischofberger J	Schmidt-Hieber C, Jonas P, Bischofberger J (2007) [PubMed]	Dentate gyrus granule cell: subthreshold signal processing (Schmidt-Hieber et al. 2007)
Bischoff S	Allam SL, Bouteiller JM, Hu EY, Ambert N, Greget R, Bischoff S, Baudry M, Berger TW (2015) [PubMed]	Response of AMPA receptor kinetic model to glutamate release distance (Allam et al., 2015)
Bisson G	Safiulina VF, Caiati MD, Sivakumaran S, Bisson G, Migliore M, Cherubini E (2010) [PubMed]	CA3 pyramidal neuron (Safiulina et al. 2010)
Bittner KC	Grienberger C, Milstein AD, Bittner KC, Romani S, Magee JC (2017) [PubMed]	CA1 pyr cell: Inhibitory modulation of spatial selectivity+phase precession (Grienberger et al 2017)
Bittner KC	Bittner KC, Milstein AD, Grienberger C, Romani S, Magee JC (2017) [PubMed]	Behavioral time scale synaptic plasticity underlies CA1 place fields (Bittner et al. 2017)
Blackwell KT	Jedrzejewska-Szmek J, Luczak V, Abel T, Blackwell KT (2017) [PubMed]	Signaling pathways underlying LTP in hippocampal CA1 pyramidal cells (Jedrzejewska-Szmek et al 2017)
Blackwell KT	Jedrzejewska-Szmek J, Damodaran S, Dorman DB, Blackwell KT (2016) [PubMed]	Striatal Spiny Projection Neuron (SPN) plasticity rule (Jedrzejewska-Szmek et al 2016)
Blackwell KT	Chay A, Zamparo I, Koschinski A, Zaccolo M, Blackwell KT (2016) [PubMed]	CA1 pyramidal cell receptor dependent cAMP dynamics (Chay et al. 2016)
Blackwell KT	Damodaran S, Cressman JR, Jedrzejewski-Szmek Z, Blackwell KT (2015) [PubMed]	Striatal NN model of MSNs and FSIs investigated effects of dopamine depletion (Damodaran et al 2015)
Blackwell KT	Damodaran S, Evans RC, Blackwell KT (2014) [PubMed]	Synchronicity of fast-spiking interneurons balances medium-spiny neurons (Damodaran et al. 2014)
Blackwell KT	Evans RC, Morera-Herreras T, Cui Y, Du K, Sheehan T, Kotaleski JH, Venance L, Blackwell KT (2012) [PubMed]	NMDA subunit effects on Calcium and STDP (Evans et al. 2012)
Blackwell KT	Kim M, Park AJ, Havekes R, Chay A, Guercio LA, Oliveira RF, Abel T, Blackwell KT (2011) [PubMed]	Hippocampus CA1: Simulations of LTP signaling pathways (Kim M et al. 2011)
Blackwell KT	Evans RC, Maniar YM, Blackwell KT (2013) [PubMed]	Calcium influx during striatal upstates (Evans et al. 2013)
Blackwell KT	Oliveira RF, Kim M, Blackwell KT (2012) [PubMed]	Dopamine activation of signaling pathways in a medium spiny projection neuron (Oliveira et al. 2012)
Blackwell KT	Ferrante M, Blackwell KT, Migliore M, Ascoli GA (2008) [PubMed]	Computational neuropharmacology of CA1 pyramidal neuron (Ferrante et al. 2008)
Blackwell KT	Hjorth J, Blackwell KT, Kotaleski JH (2009) [PubMed]	Gap junction coupled network of striatal fast spiking interneurons (Hjorth et al. 2009)
Blackwell KT	Blackwell KT (2004) [PubMed]	Paired turbulence and light effect on calcium increase in Hermissenda (Blackwell 2004)
Blackwell KT	Kotaleski JH, Plenz D, Blackwell KT (2006) [PubMed]	FS Striatal interneuron: K currents solve signal-to-noise problems (Kotaleski et al 2006)
Blackwell KT	Blackwell KT (2006) [PubMed]	Differences between type A and B photoreceptors (Blackwell 2006)
Blackwell KT	Lindskog M, Kim M, Wikstrom MA, Blackwell KT, Kotaleski JH (2006) [PubMed]	Model of DARPP-32 phosphorylation in striatal medium spiny neurons (Lindskog et al. 2006)

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