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Models that contain the Neurotransmitter : Amino Acids

   Models
A fast model of voltage-dependent NMDA Receptors (Moradi et al. 2013)
A Fast Rhythmic Bursting Cell: in vivo cell modeling (Lee 2007)
A kinetic model unifying presynaptic short-term facilitation and depression (Lee et al. 2009)
A Method for Prediction of Receptor Activation in the Simulation of Synapses (Montes et al. 2013)
A Model of Multiple Spike Initiation Zones in the Leech C-interneuron (Crisp 2009)
A model of unitary responses from A/C and PP synapses in CA3 pyramidal cells (Baker et al. 2010)
A Moth MGC Model-A HH network with quantitative rate reduction (Buckley & Nowotny 2011)
A network model of the vertebrate retina (Publio et al. 2009)
Amyloid-beta effects on release probability and integration at CA3-CA1 synapses (Romani et al. 2013)
An attractor network model of grid cells and theta-nested gamma oscillations (Pastoll et al., 2013)
Application of a common kinetic formalism for synaptic models (Destexhe et al 1994)
Basal ganglia network model of subthalamic deep brain stimulation (Hahn and McIntyre 2010)
BCM-like synaptic plasticity with conductance-based models (Narayanan Johnston, 2010)
CA1 pyramidal neuron dendritic spine with plasticity (O`Donnell et al. 2011)
CA1 pyramidal neuron: calculation of MRI signals (Cassara et al. 2008)
CA1 pyramidal neuron: dendritic spike initiation (Gasparini et al 2004)
CA1 pyramidal neuron: depolarization block (Bianchi et al. 2012)
CA1 pyramidal neuron: integration of subthreshold inputs from PP and SC (Migliore 2003)
CA1 pyramidal neuron: rebound spiking (Ascoli et al.2010)
CA1 pyramidal neuron: schizophrenic behavior (Migliore et al. 2011)
CA1 pyramidal neuron: signal propagation in oblique dendrites (Migliore et al 2005)
CA1 pyramidal neurons: effects of Kv7 (M-) channels on synaptic integration (Shah et al. 2011)
CA3 pyramidal neuron (Safiulina et al. 2010)
Ca3 pyramidal neuron: membrane response near rest (Hemond et al. 2009)
Calcium waves and mGluR-dependent synaptic plasticity in CA1 pyr. neurons (Ashhad & Narayanan 2013)
Calyx of Held, short term plasticity (Yang Z et al. 2009)
Cerebellar Nucleus Neuron (Steuber, Schultheiss, Silver, De Schutter & Jaeger, 2010)
Coding of stimulus frequency by latency in thalamic networks (Golomb et al 2005)
Comparison of full and reduced globus pallidus models (Hendrickson 2010)
Competition model of pheromone ratio detection (Zavada et al. 2011)
Composite spiking network/neural field model of Parkinsons (Kerr et al 2013)
Computational neuropharmacology of CA1 pyramidal neuron (Ferrante et al. 2008)
Computer model of clonazepam`s effect in thalamic slice (Lytton 1997)
Cortical network model of posttraumatic epileptogenesis (Bush et al 1999)
DBS of a multi-compartment model of subthalamic nucleus projection neurons (Miocinovic et al. 2006)
Dendritic Discrimination of Temporal Input Sequences (Branco et al. 2010)
Dendritic signals command firing dynamics in a Cerebellar Purkinje Cell model (Genet et al. 2010)
Dentate Basket Cell: spatial summation of inhibitory synaptic inputs (Bartos et al 2001)
Dentate Gyrus Feed-forward inhibition (Ferrante et al. 2009)
Dentate gyrus granule cell: subthreshold signal processing (Schmidt-Hieber et al. 2007)
Duration-tuned neurons from the inferior colliculus of the big brown bat (Aubie et al. 2009)
Duration-tuned neurons from the inferior colliculus of vertebrates (Aubie et al. 2012)
Dynamic dopamine modulation in the basal ganglia: Learning in Parkinson (Frank et al 2004,2005)
Effects of Chloride accumulation and diffusion on GABAergic transmission (Jedlicka et al 2011)
Effects of increasing CREB on storage and recall processes in a CA1 network (Bianchi et al. 2013)
Efficient Method for Computing Synaptic Conductance (Destexhe et al 1994)
Emergence of Connectivity Motifs in Networks of Model Neurons
Emergence of physiological oscillation frequencies in neocortex simulations (Neymotin et al. 2011)
Emergent properties of networks of biological signaling pathways (Bhalla, Iyengar 1999)
Endothelin action on pituitary latotrophs (Bertram et al. 2006)
Epilepsy may be caused by very small functional changes in ion channels (Thomas et al. 2009)
Excitatory synaptic interactions in pyramidal neuron dendrites (Behabadi et al. 2012)
Fast AMPA receptor signaling (Geiger et al 1997)
Frog second-order vestibular neuron models (Rössert et al. 2011)
Functional impact of dendritic branch point morphology (Ferrante et al., 2013)
Gap junction coupled network of striatal fast spiking interneurons (Hjorth et al. 2009)
Generating oscillatory bursts from a network of regular spiking neurons (Shao et al. 2009)
Globus pallidus neuron models with differing dendritic Na channel expression (Edgerton et al., 2010)
Glutamate diffusion and AMPA receptor activation in the cerebellar glomerulus (Saftenku 2005)
Hippocampal basket cell gap junction network dynamics (Saraga et al. 2006)
Homosynaptic plasticity in the tail withdrawal circuit (TWC) of Aplysia (Baxter and Byrne 2006)
Human sleep/wake cycle (Rempe et al. 2010)
Ih tunes oscillations in an In Silico CA3 model (Neymotin et al. 2013)
Impact of dendritic atrophy on intrinsic and synaptic excitability (Narayanan & Chattarji, 2010)
Inferior Olive, subthreshold oscillations (Torben-Nielsen, Segev, Yarom 2012)
Interacting synaptic conductances during, distorting, voltage clamp (Poleg-Polsky and Diamond 2011)
Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011)
Kinetic NMDA receptor model (Kampa et al 2004)
Kinetic synaptic models applicable to building networks (Destexhe et al 1998)
KInNeSS : a modular framework for computational neuroscience (Versace et al. 2008)
Large scale model of the olfactory bulb (Yu et al., 2013)
Layer V PFC pyramidal neuron used to study persistent activity (Sidiropoulou & Poirazi 2012)
LGMD Variability and logarithmic compression in dendrites (Jones and Gabbiani, 2012, 2012B)
Lobster STG pyloric network model with calcium sensor (Gunay & Prinz 2010) (Prinz et al. 2004)
MEG of Somatosensory Neocortex (Jones et al. 2007)
Modeling temperature changes in AMPAR kinetics (Postlethwaite et al 2007)
Multiple mechanisms of short term plasticity at the calyx of Held (Hennig et al. 2008)
Na channel mutations in the dentate gyrus (Thomas et al. 2009)
NAcc medium spiny neuron: effects of cannabinoid withdrawal (Spiga et al. 2010)
Network bursts in cultured NN result from different adaptive mechanisms (Masquelier & Deco 2013)
NMDA receptor saturation (Chen et al 2001)
Nonlinear dendritic processing in barrel cortex spiny stellate neurons (Lavzin et al. 2012)
Numerical Integration of Izhikevich and HH model neurons (Stewart and Bair 2009)
Olfactory bulb granule cell: effects of odor deprivation (Saghatelyan et al 2005)
Olfactory bulb mitral and granule cell column formation (Migliore et al. 2007)
Olfactory bulb mitral and granule cell: dendrodendritic microcircuits (Migliore and Shepherd 2008)
Olfactory Bulb Network (Davison et al 2003)
Olfactory Computations in Mitral-Granule cell circuits (Migliore & McTavish 2013)
Optimal deep brain stimulation of the subthalamic nucleus-a computational study (Feng et al. 2007)
Paired turbulence and light effect on calcium increase in Hermissenda (Blackwell 2004)
Parametric computation and persistent gamma in a cortical model (Chambers et al. 2012)
Persistent synchronized bursting activity in cortical tissues (Golomb et al 2005)
Pipette and membrane patch geometry effects on GABAa currents patch-clamp exps (Moroni et al. 2011)
Prosthetic electrostimulation for information flow repair in a neocortical simulation (Kerr 2012)
Rapid desynchronization of an electrically coupled Golgi cell network (Vervaeke et al. 2010)
Reconstrucing sleep dynamics with data assimilation (Sedigh-Sarvestani et al., 2012)
Reinforcement learning of targeted movement (Chadderdon et al. 2012)
Respiratory central pattern generator network in mammalian brainstem (Rubin et al. 2009)
Ribbon Synapse (Sikora et al 2005)
Roles of essential kinases in induction of late hippocampal LTP (Smolen et al., 2006)
Roles of subthalamic nucleus and DBS in reinforcement conflict-based decision making (Frank 2006)
Sensorimotor cortex reinforcement learning of 2-joint virtual arm reaching (Neymotin et al. 2013)
Short term plasticity at the cerebellar granule cell (Nieus et al. 2006)
Short term plasticity of synapses onto V1 layer 2/3 pyramidal neuron (Varela et al 1997)
Simulated cortical color opponent receptive fields self-organize via STDP (Eguchi et al., 2014)
Single compartment Dorsal Lateral Medium Spiny Neuron w/ NMDA and AMPA (Biddell and Johnson 2013)
Spike timing detection in different forms of LTD (Doi et al 2005)
Spiking GridPlaceMap model (Pilly & Grossberg, PLoS One, 2013)
Spiking neuron model of the basal ganglia (Humphries et al 2006)
Spine neck plasticity controls postsynaptic calcium signals (Grunditz et al. 2008)
State dependent drug binding to sodium channels in the dentate gyrus (Thomas & Petrou 2013)
STDP depends on dendritic synapse location (Letzkus et al. 2006)
Striatal GABAergic microcircuit, dopamine-modulated cell assemblies (Humphries et al. 2009)
Striatal GABAergic microcircuit, spatial scales of dynamics (Humphries et al, 2010)
Structure-dynamics relationships in bursting neuronal networks revealed (Mäki-Marttunen et al. 2013)
Superior paraolivary nucleus neuron (Kopp-Scheinpflug et al. 2011)
Surround Suppression in V1 via Withdraw of Balanced Local Excitation in V1 (Shushruth 2012)
Synaptic gating at axonal branches, and sharp-wave ripples with replay (Vladimirov et al. 2013)
Synaptic integration in tuft dendrites of layer 5 pyramidal neurons (Larkum et al. 2009)
Synaptic plasticity: pyramid->pyr and pyr->interneuron (Tsodyks et al 1998)
Synaptic scaling balances learning in a spiking model of neocortex (Rowan & Neymotin 2013)
Synaptic transmission at the calyx of Held (Graham et al 2001)
Synthesis of spatial tuning functions from theta cell spike trains (Welday et al., 2011)
Thalamic neuron, zebra finch DLM: Integration of pallidal and cortical inputs (Goldberg et al. 2012)
Thalamic quiescence of spike and wave seizures (Lytton et al 1997)
Thalamocortical augmenting response (Bazhenov et al 1998)
Thalamocortical model of spike and wave seizures (Suffczynski et al. 2004)
Theta phase precession in a model CA3 place cell (Baker and Olds 2007)
Using Strahler’s analysis to reduce realistic models (Marasco et al, 2013)
Wang-Buzsaki Interneuron (Talathi et al., 2010)


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