Models that contain the Modeling Application : Python (Home Page)

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Re-display model names with descriptions
    Models
1. Earthworm medial giant fiber conduction velocity across electrical synapses (Heller, Crisp 2016)
2. 3D olfactory bulb: operators (Migliore et al, 2015)
3. 3D-printer visualization of NEURON models (McDougal and Shepherd, 2015)
4. A contracting model of the basal ganglia (Girard et al. 2008)
5. A dendritic disinhibitory circuit mechanism for pathway-specific gating (Yang et al. 2016)
6. A detailed Purkinje cell model (Masoli et al 2015)
7. A model for how correlation depends on the neuronal excitability type (Hong et al. 2012)
8. A network of AOB mitral cells that produces infra-slow bursting (Zylbertal et al. 2017)
9. A set of reduced models of layer 5 pyramidal neurons (Bahl et al. 2012)
10. A simple model of neuromodulatory state-dependent synaptic plasticity (Pedrosa and Clopath, 2016)
11. A spatial model of the intermediate superior colliculus (Moren et. al. 2013)
12. A spiking NN for amplification of feature-selectivity with specific connectivity (Sadeh et al 2015)
13. A threshold equation for action potential initiation (Platkiewicz & Brette 2010)
14. Accurate and fast simulation of channel noise in conductance-based model neurons (Linaro et al 2011)
15. Activity patterns in a subthalamopallidal network of the basal ganglia model (Terman et al 2002)
16. Adaptive exponential integrate-and-fire model (Brette & Gerstner 2005)
17. Allen Institute: Gad2-IRES-Cre VISp layer 5 472447460
18. Allen Institute: Gad2-IRES-Cre VISp layer 5 473561729
19. Allen Institute: Htr3a-Cre VISp layer 2/3 472352327
20. Allen Institute: Htr3a-Cre VISp layer 2/3 472421285
21. Allen Institute: Nr5a1-Cre VISp layer 2/3 473862496
22. Allen Institute: Nr5a1-Cre VISp layer 4 329322394
23. Allen Institute: Nr5a1-Cre VISp layer 4 472306544
24. Allen Institute: Nr5a1-Cre VISp layer 4 472442377
25. Allen Institute: Nr5a1-Cre VISp layer 4 472451419
26. Allen Institute: Nr5a1-Cre VISp layer 4 472915634
27. Allen Institute: Nr5a1-Cre VISp layer 4 473834758
28. Allen Institute: Nr5a1-Cre VISp layer 4 473863035
29. Allen Institute: Nr5a1-Cre VISp layer 4 473871429
30. Allen Institute: Ntsr1-Cre VISp layer 4 472430904
31. Allen Institute: Pvalb-IRES-Cre VISp layer 2/3 472306616
32. Allen Institute: Pvalb-IRES-Cre VISp layer 5 471085845
33. Allen Institute: Pvalb-IRES-Cre VISp layer 5 472349114
34. Allen Institute: Pvalb-IRES-Cre VISp layer 5 472912177
35. Allen Institute: Pvalb-IRES-Cre VISp layer 5 473465774
36. Allen Institute: Pvalb-IRES-Cre VISp layer 5 473862421
37. Allen Institute: Pvalb-IRES-Cre VISp layer 6a 471081668
38. Allen Institute: Pvalb-IRES-Cre VISp layer 6a 472301074
39. Allen Institute: Pvalb-IRES-Cre VISp layer 6a 473860269
40. Allen Institute: Rbp4-Cre VISp layer 5 472424854
41. Allen Institute: Rbp4-Cre VISp layer 6a 473871592
42. Allen Institute: Rorb-IRES2-Cre-D VISp layer 2/3 472299294
43. Allen Institute: Rorb-IRES2-Cre-D VISp layer 2/3 472434498
44. Allen Institute: Rorb-IRES2-Cre-D VISp layer 4 473863510
45. Allen Institute: Rorb-IRES2-Cre-D VISp layer 5 471087975
46. Allen Institute: Rorb-IRES2-Cre-D VISp layer 5 473561660
47. Allen Institute: Scnn1a-Tg2-Cre VISp layer 4 472300877
48. Allen Institute: Scnn1a-Tg2-Cre VISp layer 4 472427533
49. Allen Institute: Scnn1a-Tg2-Cre VISp layer 4 472912107
50. Allen Institute: Scnn1a-Tg2-Cre VISp layer 4 473465456
51. Allen Institute: Scnn1a-Tg2-Cre VISp layer 5 472306460
52. Allen Institute: Scnn1a-Tg3-Cre VISp layer 4 329321704
53. Allen Institute: Scnn1a-Tg3-Cre VISp layer 4 472363762
54. Allen Institute: Scnn1a-Tg3-Cre VISp layer 4 473862845
55. Allen Institute: Scnn1a-Tg3-Cre VISp layer 4 473872986
56. Allen Institute: Scnn1a-Tg3-Cre VISp layer 5 472455509
57. Allen Institute: Scnn1a-Tg3-Cre VISp layer 5 473863578
58. Allen Institute: Scnn1a-Tg3-Cre VISp layer 5 473871773
59. Allen Institute: Sst-IRES-Cre VISp layer 2/3 471086533
60. Allen Institute: Sst-IRES-Cre VISp layer 2/3 472304676
61. Allen Institute: Sst-IRES-Cre VISp layer 4 472304539
62. Allen Institute: Sst-IRES-Cre VISp layer 5 472299363
63. Allen Institute: Sst-IRES-Cre VISp layer 5 472450023
64. Allen Institute: Sst-IRES-Cre VISp layer 5 473835796
65. Allen Institute: Sst-IRES-Cre VISp layer 6a 472440759
66. An attractor network model of grid cells and theta-nested gamma oscillations (Pastoll et al., 2013)
67. AOB mitral cell: persistent activity without feedback (Zylbertal et al., 2015)
68. Biophysical model for field potentials of networks of I&F neurons (beim Graben & Serafim 2013)
69. Boolean network-based analysis of the apoptosis network (Mai and Liu 2009)
70. Brain networks simulators - a comparative study (Tikidji-Hamburyan et al 2017)
71. Brette-Gerstner model (Touboul and Brette 2008)
72. CA1 PV+ fast-firing hippocampal interneuron (Ferguson et al. 2013)
73. CA1 pyr cell: Inhibitory modulation of spatial selectivity+phase precession (Grienberger et al 2017)
74. CA1 pyramidal cell receptor dependent cAMP dynamics (Chay et al. 2016)
75. CA1 pyramidal neuron (Ferguson et al. 2014)
76. CA1 pyramidal neuron network model (Ferguson et al 2015)
77. CA1 SOM+ (OLM) hippocampal interneuron (Ferguson et al. 2015)
78. Ca2+ oscillations in single astrocytes (Lavrentovich and Hemkin 2008) (python) (Manninen et al 2017)
79. CA3 Network Model of Epileptic Activity (Sanjay et. al, 2015)
80. Calculating the consequences of left-shifted Nav channel activity in sick cells (Joos et al 2017)
81. CN bushy, stellate neurons (Rothman, Manis 2003) (Brian 2)
82. CN bushy, stellate neurons (Rothman, Manis 2003) (Brian)
83. Cochlea: inner ear models in Python (Zilany et al 2009, 2014; Holmberg M 2007)
84. Code to calc. spike-trig. ave (STA) conduct. from Vm (Pospischil et al. 2007, Rudolph et al. 2007)
85. Cognitive and motor cortico-basal ganglia interactions during decision making (Guthrie et al 2013)
86. Collection of simulated data from a thalamocortical network model (Glabska, Chintaluri, Wojcik 2017)
87. Comparison of DA-based Stochastic Algorithms (Pezo et al. 2014)
88. Composite spiking network/neural field model of Parkinsons (Kerr et al 2013)
89. Computer models of corticospinal neurons replicate in vitro dynamics (Neymotin et al. 2017)
90. Computing with neural synchrony (Brette 2012)
91. Concentration dependent nonlinear K+ and Cl- leak current (Huang et al. 2015)
92. Connection-set Algebra (CSA) for the representation of connectivity in NN models (Djurfeldt 2012)
93. Constructed Tessellated Neuronal Geometries (CTNG) (McDougal et al. 2013)
94. Cortical model with reinforcement learning drives realistic virtual arm (Dura-Bernal et al 2015)
95. CRH modulates excitatory transmission and network physiology in hippocampus (Gunn et al. 2017)
96. Current Dipole in Laminar Neocortex (Lee et al. 2013)
97. Dendrites enable a robust mechanism for neuronal stimulus selectivity (Caze et al 2017)
98. Dentate Gyrus model including Granule cells with dendritic compartments (Chavlis et al 2017)
99. Different roles for inhibition in the rhythm-generating respiratory network (Harris et al 2017)
100. Differential interactions between Notch and ID factors control neurogenesis (Boareto et al 2017)
101. Diffusive homeostasis in a spiking network model (Sweeney et al. 2015)
102. Dipolar extracellular potentials generated by axonal projections (McColgan et al 2017)
103. Distal inhibitory control of sensory-evoked excitation (Egger, Schmitt et al. 2015)
104. Duration-tuned neurons from the inferior colliculus of vertebrates (Aubie et al. 2012)
105. Effect of polysynaptic facilitaiton between piriform-hippocampal network stages (Trieu et al 2015)
106. Effects of Guanfacine and Phenylephrine on a model of working memory (Duggins et al 2017)
107. Electrostimulation to reduce synaptic scaling driven progression of Alzheimers (Rowan et al. 2014)
108. Endocannabinoid dynamics gate spike-timing dependent depression and potentiation (Cui et al 2016)
109. Excitatory synaptic interactions in pyramidal neuron dendrites (Behabadi et al. 2012)
110. Fast global oscillations in networks of I&F neurons with low firing rates (Brunel and Hakim 1999)
111. Feedforward network undergoing Up-state-mediated plasticity (Gonzalez-Rueda et al. 2018)
112. Fully continuous Pinsky-Rinzel model for bifurcation analysis (Atherton et al. 2016)
113. Functional balanced networks with synaptic plasticity (Sadeh et al, 2015)
114. Gamma-beta alternation in the olfactory bulb (David, Fourcaud-Trocmé et al., 2015)
115. Gap junction plasticity as a mechanism to regulate network-wide oscillations (Pernelle et al 2018)
116. Glutamate-evoked Ca2+ oscillations in single astrocytes (De Pitta et al. 2009) (Manninen et al 2017)
117. Glutamate-evoked Ca2+ oscillations in single astrocytes (Modified from Dupont et al. 2011)
118. Goldfish Mauthner cell (Medan et al 2017)
119. Heterosynaptic Spike-Timing-Dependent Plasticity (Hiratani & Fukai 2017)
120. Hierarchical network model of perceptual decision making (Wimmer et al 2015)
121. High entrainment constrains synaptic depression in a globular bushy cell (Rudnicki & Hemmert 2017)
122. High-Res. Recordings Using a Real-Time Computational Model of the Electrode (Brette et al. 2008)
123. Hopfield and Brody model (Hopfield, Brody 2000) (NEURON+python)
124. Human L2/3 pyramidal cells with low Cm values (Eyal et al. 2016)
125. Ih tunes oscillations in an In Silico CA3 model (Neymotin et al. 2013)
126. Impact of fast Na channel inact. on AP threshold & synaptic integration (Platkiewicz & Brette 2011)
127. Impedance spectrum in cortical tissue: implications for LFP signal propagation (Miceli et al. 2017)
128. In vivo imaging of dentate gyrus mossy cells in behaving mice (Danielson et al 2017)
129. Information transmission in cerebellar granule cell models (Rossert et al. 2014)
130. Inhibition of bAPs and Ca2+ spikes in a multi-compartment pyramidal neuron model (Wilmes et al 2016)
131. Inhibitory plasticity balances excitation and inhibition (Vogels et al. 2011)
132. Input strength and time-varying oscillation peak frequency (Cohen MX 2014)
133. Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011)
134. Large-scale neural model of visual short-term memory (Ulloa, Horwitz 2016; Horwitz, et al. 2005,...)
135. Late emergence of the whisker direction selectivity map in rat barrel cortex (Kremer et al. 2011)
136. Layer V pyramidal cell model with reduced morphology (Mäki-Marttunen et al 2017)
137. MEC layer II stellate cell: Synaptic mechanisms of grid cells (Schmidt-Hieber & Hausser 2013)
138. Mechanisms underlying subunit independence in pyramidal neuron dendrites (Behabadi and Mel 2014)
139. Memory savings through unified pre- and postsynaptic STDP (Costa et al 2015)
140. Mesoscopic dynamics from AdEx recurrent networks (Zerlaut et al., JCNS 2017)
141. Model of eupnea and sigh generation in respiratory network (Toporikova et al 2015)
142. Model of peristalsis in the dorsal blood vessel of Lumbriculus variegatus (Halfmann and Crisp 2011)
143. Model of Type 3 firing in neurons (Clay et al 2008)
144. Modeling dendritic spikes and plasticity (Bono and Clopath 2017)
145. Modelling the effects of short and random proto-neural elongations (de Wiljes et al 2017)
146. Models of visual topographic map alignment in the Superior Colliculus (Tikidji-Hamburyan et al 2016)
147. ModelView: online structural analysis of computational models (McDougal et al. 2015)
148. ModFossa: a library for modeling ion channels using Python (Ferneyhough et al 2016)
149. Modular grid cell responses as a basis for hippocampal remapping (Monaco and Abbott 2011)
150. Motion Clouds: Synthesis of random textures for motion perception (Leon et al. 2012)
151. Motor system model with reinforcement learning drives virtual arm (Dura-Bernal et al 2017)
152. Multi-timescale adaptive threshold model (Kobayashi et al 2009) (NEURON)
153. Multiple dynamical modes of thalamic relay neurons (Wang XJ 1994)
154. Multiscale modeling of epileptic seizures (Naze et al. 2015)
155. Multiscale simulation of the striatal medium spiny neuron (Mattioni & Le Novere 2013)
156. Multitarget pharmacology for Dystonia in M1 (Neymotin et al 2016)
157. Muscle spindle feedback circuit (Moraud et al, 2016)
158. Na+ Signals in olfactory bulb neurons (granule cell model) (Ona-Jodar et al. 2017)
159. Network bursts in cultured NN result from different adaptive mechanisms (Masquelier & Deco 2013)
160. Networks of spiking neurons: a review of tools and strategies (Brette et al. 2007)
161. Neural Field Simulator (Nichols & Hutt 2012-2015)
162. Neural mass model based on single cell dynamics to model pathophysiology (Zandt et al 2014)
163. NEURON + Python (Hines et al. 2009)
164. Noise promotes independent control of gamma oscillations and grid firing (Solanka et al 2015)
165. Olfactory bulb microcircuits model with dual-layer inhibition (Gilra & Bhalla 2015)
166. Optical stimulation of a channelrhodopsin-2 positive pyramidal neuron model (Foutz et al 2012)
167. Orientation selectivity in inhibition-dominated recurrent networks (Sadeh and Rotter, 2015)
168. Oscillations, phase-of-firing coding and STDP: an efficient learning scheme (Masquelier et al. 2009)
169. Perfect Integrate and fire with noisy adaptation or fractional noise (Richard et al 2018)
170. Phase locking in leaky integrate-and-fire model (Brette 2004)
171. Phase response curves firing rate dependency of rat purkinje neurons in vitro (Couto et al 2015)
172. PIR gamma oscillations in network of resonators (Tikidji-Hamburyan et al. 2015)
173. Pleiotropic effects of SCZ-associated genes (Mäki-Marttunen et al. 2017)
174. PyMUS: A Python based Motor Unit Simulator (Kim & Kim 2018)
175. PyRhO: A multiscale optogenetics simulation platform (Evans et al 2016)
176. Python demo of the VmT method to extract conductances from single Vm traces (Pospischil et al. 2009)
177. Reliability of spike timing is a general property of spiking model neurons (Brette & Guigon 2003)
178. Reproducibility and comparability of models for astrocyte Ca2+ excitability (Manninen et al 2017)
179. Resource competition in growing neurites (Hjorth et al 2014)
180. Reward modulated STDP (Legenstein et al. 2008)
181. Schiz.-linked gene effects on intrinsic single-neuron excitability (Maki-Marttunen et al. 2016)
182. Sensitivity of noisy neurons to coincident inputs (Rossant et al. 2011)
183. Sensory feedback in an oscillatory interference model of place cell activity (Monaco et al. 2011)
184. Simulated cortical color opponent receptive fields self-organize via STDP (Eguchi et al., 2014)
185. Sloppy morphological tuning in identified neurons of the crustacean STG (Otopalik et al 2017)
186. Software (called Optimizer) for fitting neuronal models (Friedrich et al. 2014)
187. Sparse connectivity is required for decorrelation, pattern separation (Cayco-Gajic et al 2017)
188. Spatial structure from diffusive synaptic plasticity (Sweeney and Clopath, 2016)
189. Speed/accuracy trade-off between the habitual and the goal-directed processes (Kermati et al. 2011)
190. Spike-Timing-Based Computation in Sound Localization (Goodman and Brette 2010)
191. Spikelet generation and AP initiation in a L5 neocortical pyr neuron (Michalikova et al. 2016) Fig 1
192. Spikelet generation and AP initiation in a simplified pyr neuron (Michalikova et al. 2016) Fig 3
193. Spontaneous calcium oscillations in single astrocytes (Riera et al. 2011) (Manninen et al 2017)
194. Spontaneous weakly correlated excitation and inhibition (Tan et al. 2013)
195. Stable propagation of synchronous spiking in cortical neural networks (Diesmann et al 1999)
196. STDP allows fast rate-modulated coding with Poisson-like spike trains (Gilson et al. 2011)
197. STDP and oscillations produce phase-locking (Muller et al. 2011)
198. Stochastic versions of the Hodgkin-Huxley equations (Goldwyn, Shea-Brown 2011) (pylab)
199. Striatal D1R medium spiny neuron, including a subcellular DA cascade (Lindroos et al 2018)
200. Structure-dynamics relationships in bursting neuronal networks revealed (Mäki-Marttunen et al. 2013)
201. Synaptic scaling balances learning in a spiking model of neocortex (Rowan & Neymotin 2013)
202. Synchronized oscillations of clock gene expression in the choroid plexus (Myung et al 2018)
203. Tag Trigger Consolidation (Clopath and Ziegler et al. 2008)
204. Theory and simulation of integrate-and-fire neurons driven by shot noise (Droste & Lindner 2017)
205. Theory of arachnid prey localization (Sturzl et al. 2000)
206. Theory of sequence memory in neocortex (Hawkins & Ahmad 2016)
207. Time-warp-invariant neuronal processing (Gutig & Sompolinsky 2009)
208. TRPM8-dependent dynamic response in cold thermoreceptors (Olivares et al. 2015)
209. Unsupervised learning of an efficient short-term memory network (Vertechi, Brendel & Machens 2014)
210. Vectorized algorithms for spiking neural network simulation (Brette and Goodman 2011)
211. Vertical System (VS) tangential cells network model (Trousdale et al. 2014)
212. Voltage-based STDP synapse (Clopath et al. 2010)

Re-display model names with descriptions