Models that contain the Modeling Application : MATLAB (Home Page)

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Re-display model names with descriptions
    Models
1. A bistable model of Spike-Wave seizure and background activity (Taylor et al. 2014)
2. A cortical sheet mesoscopic model for investigating focal seizure onset dynamics (Wang et al. 2014)
3. A detailed data-driven network model of prefrontal cortex (Hass et al 2016)
4. A generic MAPK cascade model for random parameter sampling analysis (Mai and Liu 2013)
5. A kinetic model unifying presynaptic short-term facilitation and depression (Lee et al. 2009)
6. A mathematical model of evoked calcium dynamics in astrocytes (Handy et al 2017)
7. A microcircuit model of the frontal eye fields (Heinzle et al. 2007)
8. A model of local field potentials generated by medial superior olive neurons (Goldwyn et al 2014)
9. A multiphysics neuron model for cellular volume dynamics (Lee et al. 2011)
10. A Neural mass computational model of the Thalamocorticothalamic circuitry (Bhattacharya et al. 2011)
11. A neural model of Parkinson`s disease (Cutsuridis and Perantonis 2006, Cutsuridis 2006, 2007)
12. A simulation method for the firing sequences of motor units (Jiang et al 2006)
13. A spatially extended model for macroscopic spike-wave discharges (Taylor and Baier 2011)
14. A spiking model of cortical broadcast and competition (Shanahan 2008)
15. A two-layer biophysical olfactory bulb model of cholinergic neuromodulation (Li and Cleland 2013)
16. ACh modulation in olfactory bulb and piriform cortex (de Almeida et al. 2013;Devore S, et al. 2014)
17. Activator protein 1(AP-1) transcriptional regulatory model in brainstem neurons (Makadia et al 2015)
18. Activity dependent changes in dendritic spine density and spine structure (Crook et al. 2007)
19. Adaptation of Short-Term Plasticity parameters (Esposito et al. 2015)
20. Ambiguous Encoding and Distorted Perception (Carlson and Kawasaki 2006)
21. Artificial neuron model (Izhikevich 2003, 2004, 2007)
22. Auditory nerve model for predicting performance limits (Heinz et al 2001)
23. Auditory nerve model with linear tuning (Heinz et al 2001)
24. Auditory nerve response model (Tan, Carney 2003)
25. Axon growth model (Diehl et al. 2016)
26. Axonal HH-model for temperature stimulation (Fribance et al 2016)
27. Balance of excitation and inhibition (Carvalho and Buonomano 2009)
28. Basal ganglia-corticothalamic (BGCT) network (Chen et al., 2014)
29. Basal ganglia-thalamic network model for deep brain stimulation (So et al. 2011)
30. Basal ganglia-thalamocortical loop model of action selection (Humphries and Gurney 2002)
31. Breakdown of accmmodation in nerve: a possible role for INAp (Hennings et al 2005)
32. Bursting and oscillations in RD1 Retina driven by AII Amacrine Neuron (Choi et al. 2014)
33. CA1 pyramidal cells, basket cells, ripples (Malerba et al 2016)
34. CA1 pyramidal neuron dendritic spine with plasticity (O`Donnell et al. 2011)
35. CA1 pyramidal: Stochastic amplification of KCa in Ca2+ microdomains (Stanley et al. 2011)
36. CA3 Radiatum/Lacunosum-Moleculare interneuron, Ih (Anderson et al. 2011)
37. Calyx of Held, short term plasticity (Yang Z et al. 2009)
38. Cancelling redundant input in ELL pyramidal cells (Bol et al. 2011)
39. Cell signaling/ion channel variability effects on neuronal response (Anderson, Makadia, et al. 2015)
40. Circadian clock model based on protein sequestration (simple version) (Kim & Forger 2012)
41. Circadian clock model in mammals (detailed version) (Kim & Forger 2012)
42. Combination sensitivity and active conductances (Carlson and Kawasaki 2006)
43. Comparing correlation responses to motion estimation models (Salazar-Gatzimas et al. 2016)
44. Competing oscillator 5-cell circuit and Parameterscape plotting (Gutierrez et al. 2013)
45. Composite spiking network/neural field model of Parkinsons (Kerr et al 2013)
46. Computational modelling of channelrhodopsin-2 photocurrent characteristics (Stefanescu et al. 2013)
47. CONFIGR: a vision-based model for long-range figure completion (Carpenter et al. 2007)
48. Continuous time stochastic model for neurite branching (van Elburg 2011)
49. Continuum model of tubulin-driven neurite elongation (Graham et al 2006)
50. Cortex-Basal Ganglia-Thalamus network model (Kumaravelu et al. 2016)
51. Cortico-striatal plasticity in medium spiny neurons (Gurney et al 2015)
52. Deep belief network learns context dependent behavior (Raudies, Zilli, Hasselmo 2014)
53. Dendritic Na inactivation drives a decrease in ISI (Fernandez et al 2005)
54. Dendritic properties control energy efficiency of APs in cortical pyramidal cells (Yi et al 2017)
55. Detailed analysis of trajectories in the Morris water maze (Gehring et al. 2015)
56. Dipole Localization Kit (Mechler & Victor, 2012)
57. Direct recruitment of S1 pyramidal cells and interneurons via ICMS (Overstreet et al., 2013)
58. Distributed cerebellar plasticity implements adaptable gain control (Garrido et al., 2013)
59. Distributed representation of perceptual categories in the auditory cortex (Kim and Bao 2008)
60. Distributed synaptic plasticity and spike timing (Garrido et al. 2013)
61. Dopamine-modulated medium spiny neuron, reduced model (Humphries et al. 2009)
62. Drosophila 3rd instar larval aCC motoneuron (Gunay et al. 2015)
63. Effect of ionic diffusion on extracellular potentials (Halnes et al 2016)
64. Effects of the membrane AHP on the Lateral Superior Olive (LSO) (Zhou & Colburn 2010)
65. Electrodiffusive astrocytic and extracellular ion concentration dynamics model (Halnes et al. 2013)
66. Elementary mechanisms producing facilitation of Cav2.1 (P/Q-type) channels
67. ELL pyramidal neuron (Simmonds and Chacron 2014)
68. Emergence of Connectivity Motifs in Networks of Model Neurons (Vasilaki, Giugliano 2014)
69. Ephaptic coupling in passive cable and MSO neuron models (Goldwyn & Rinzel 2016)
70. Epileptic seizure model with Morris-Lecar neurons (Beverlin and Netoff 2011)
71. Estimation of conductance in a conductance-based model of quadratic type (Vich & Guillamon 2015)
72. Excessive beta oscillations in Parkinson's disease (Pavlides et al. 2015)
73. Excitability of DA neurons and their regulation by synaptic input (Morozova et al. 2016a, 2016b)
74. Excitation-contraction coupling in an integrative heart cell model (Greenstein et al 2006)
75. Extracellular Action Potential Simulations (Gold et al 2007)
76. Extraction and classification of three cortical neuron types (Mensi et al. 2012)
77. Failure of Deep Brain Stimulation in a basal ganglia neuronal network model (Dovzhenok et al. 2013)
78. Feature integration drives probabilistic behavior in Fly escape response (von Reyn et al 2017)
79. FFV1MT: A V1-MT feedforward architecture for optical flow estimation (Solari et a., 2015)
80. Fisher and Shannon information in finite neural populations (Yarrow et al. 2012)
81. Fractional leaky integrate-and-fire model (Teka et al. 2014)
82. FRAT: An amygdala-centered model of fear conditioning (Krasne et al. 2011)
83. Gap junction coupled network of striatal fast spiking interneurons (Hjorth et al. 2009)
84. Generation of granule cell dendritic morphology (Schneider et al. 2014)
85. Generic Bi-directional Real-time Neural Interface (Zrenner et al. 2010)
86. Grid cell model with compression effects (Raudies & Hasselmo, 2015)
87. Grid cell oscillatory interference with noisy network oscillators (Zilli and Hasselmo 2010)
88. Grid cell spatial firing models (Zilli 2012)
89. Grid cells from place cells (Castro & Aguiar, 2014)
90. Hierarchical Gaussian Filter (HGF) model of conditioned hallucinations task (Powers et al 2017)
91. Hippocampal CA3 network and circadian regulation (Stanley et al. 2013)
92. Hippocampal spiking model for context dependent behavior (Raudies & Hasselmo 2014)
93. Hodgkin–Huxley model with fractional gating (Teka et al. 2016)
94. Homeostatic synaptic plasticity (Rabinowitch and Segev 2006a,b)
95. Hybrid oscillatory interference / continuous attractor NN of grid cell firing (Bush & Burgess 2014)
96. Hyperbolic model (Daneshzand et al 2017)
97. Hyperconnectivity, slow synapses in PFC mental retardation and autism model (Testa-Silva et al 2011)
98. I&F recurrent networks with current- or conductance-based synapses (Cavallari et al. 2014)
99. IA and IT interact to set first spike latency (Molineux et al 2005)
100. Impact of dendritic size and topology on pyramidal cell burst firing (van Elburg and van Ooyen 2010)
101. INa and IKv4.3 heterogeneity in canine LV myocytes (Flaim et al 2006)
102. Inferring connection proximity in electrically coupled networks (Cali et al. 2007)
103. Inhibitory plasticity balances excitation and inhibition (Vogels et al. 2011)
104. Inner hair cell auditory nerve synapse model (Deligeorges, Mountain 1997)
105. Input strength and time-varying oscillation peak frequency (Cohen MX 2014)
106. Investigation of different targets in deep brain stimulation for Parkinson`s (Pirini et al. 2009)
107. Irregular spiking in NMDA-driven prefrontal cortex neurons (Durstewitz and Gabriel 2006)
108. L5 pyr. cell spiking control by oscillatory inhibition in distal apical dendrites (Li et al 2013)
109. Laminar analysis of excitatory circuits in vibrissal motor and sensory cortex (Hooks et al. 2011)
110. Laminar connectivity matrix simulation (Weiler et al 2008)
111. Lateral dendrodenditic inhibition in the Olfactory Bulb (David et al. 2008)
112. Layer 5 Pyramidal Neuron (Shai et al., 2015)
113. Leaky integrate-and-fire model of spike frequency adaptation in the LGMD (Gabbiani and Krapp 2006)
114. Learning intrinsic excitability in Medium Spiny Neurons (Scheler 2014)
115. LGMD Variability and logarithmic compression in dendrites (Jones and Gabbiani, 2012, 2012B)
116. LGNcircuit: Minimal LGN network model of temporal processing of visual input (Norheim et al. 2012)
117. Lillie Transition: onset of saltatory conduction in myelinating axons (Young et al. 2013)
118. Linking STDP and Dopamine action to solve the distal reward problem (Izhikevich 2007)
119. Macroscopic model of epilepsy (Fietkiewicz & Loparo 2016)
120. Markov Chain-based Stochastic Shielding Hodgkin Huxley Model (Schmandt, Galan 2012)
121. Mathematical model for windup (Aguiar et al. 2010)
122. Maximum entropy model to predict spatiotemporal spike patterns (Marre et al. 2009)
123. Mean Field Equations for Two-Dimensional Integrate and Fire Models (Nicola and Campbell, 2013)
124. Mean-field systems and small scale neural networks (Ferguson et al. 2015)
125. Mechanisms of magnetic stimulation of central nervous system neurons (Pashut et al. 2011)
126. Mechanisms underlying different onset patterns of focal seizures (Wang Y et al 2017)
127. Medial reticular formation of the brainstem: anatomy and dynamics (Humphries et al. 2006, 2007)
128. Memory savings through unified pre- and postsynaptic STDP (Costa et al 2015)
129. Method for deriving general HH neuron model`s spiking input-output relation (Soudry & Meir 2014)
130. Microglial cytokine network (Anderson et al., 2015)
131. Microsaccades and synchrony coding in the retina (Masquelier et al. 2016)
132. Midbrain torus semicircularis neuron model (Aumentado-Armstrong et al. 2015)
133. Model of AngII signaling and membrane electrophysiology (Makadia, Anderson, Fey et al., 2015)
134. Model of calcium oscillations in olfactory cilia (Reidl et al. 2006)
135. Model of cochlear membrane adapted (Peterson, Bogert 1950)
136. Model of long range transmission of gamma oscillation (Murray 2007)
137. Model of working memory based on negative derivative feedback (Lim and Goldman, 2013)
138. Model predictive control model for an isometric motor task (Ueyama 2017)
139. Modeling extracellular electrical stimulation (Tahayori et al. 2012)
140. Modeling hebbian and homeostatic plasticity (Toyoizumi et al. 2014)
141. Modelling enteric neuron populations and muscle fed-state motor patterns (Chambers et al. 2011)
142. Models for cortical UP-DOWN states in a bistable inhibitory-stabilized network (Jercog et al 2017)
143. Models of Vector Navigation with Grid Cells (Bush et al., 2015)
144. Motoneuron model of self-sustained firing after spinal cord injury (Kurian et al. 2011)
145. Motoneuron simulations for counting motor units (Major and Jones 2005)
146. Multiple mechanisms of short term plasticity at the calyx of Held (Hennig et al. 2008)
147. Multiple modes of inner hair cell stimulation (Mountain, Cody 1999)
148. Multisensory integration in the superior colliculus: a neural network model (Ursino et al. 2009)
149. Neocort. pyramidal cells subthreshold somatic voltage controls spike propagation (Munro Kopell 2012)
150. Network models of frequency modulated sweep detection (Skorheim et al. 2014)
151. Neural mass model based on single cell dynamics to model pathophysiology (Zandt et al 2014)
152. Neural mass model of the sleeping cortex (Weigenand et al 2014)
153. Neural model of frog ventilatory rhythmogenesis (Horcholle-Bossavit and Quenet 2009)
154. Neural transformations on spike timing information (Tripp and Eliasmith 2007)
155. Neural-field model of generalized seizures (Zhao et al., 2015)
156. Non-Weak E-Fields Pyramidal Neurons (Reznik et. al.,2015)
157. Norns - Neural Network Studio (Visser & Van Gils 2014)
158. Numerical Integration of Izhikevich and HH model neurons (Stewart and Bair 2009)
159. Odor supported place cell model and goal navigation in rodents (Kulvicius et al. 2008)
160. Olfactory bulb juxtaglomerular models (Carey et al., 2015)
161. Olfactory Bulb mitral-granule network generates beta oscillations (Osinski & Kay 2016)
162. Olfactory bulb network: neurogenetic restructuring and odor decorrelation (Chow et al. 2012)
163. Olfactory receptor neuron model (Dougherty et al 2005)
164. Opponent-channel model of the cortical representation of auditory space (Briley et al., 2012)
165. Optimal spatiotemporal spike pattern detection by STDP (Masquelier 2017)
166. Oscillating neurons in the cochlear nucleus (Bahmer Langner 2006a, b, and 2007)
167. Oscillation and coding in a proposed NN model of insect olfaction (Horcholle-Bossavit et al. 2007)
168. Oscillations emerging from noise-driven NNs (Tchumatchenko & Clopath 2014)
169. Oversampling method to extract excitatory and inhibitory conductances (Bedard et al. 2012)
170. Parallel cortical inhibition processing enables context-dependent behavior (Kuchibhotla et al. 2016)
171. Parameter estimation for Hodgkin-Huxley based models of cortical neurons (Lepora et al. 2011)
172. Phase oscillator models for lamprey central pattern generators (Varkonyi et al. 2008)
173. Phase plane reveals two slow variables in midbrain dopamine neuron bursts (Yu and Canavier, 2015)
174. Phase precession through acceleration of local theta rhythm (Castro & Aguiar 2011)
175. Phase response curves firing rate dependency of rat purkinje neurons in vitro (Couto et al 2015)
176. Pipette and membrane patch geometry effects on GABAa currents patch-clamp exps (Moroni et al. 2011)
177. Point process framework for modeling electrical stimulation of auditory nerve (Goldwyn et al. 2012)
178. Population-level model of the basal ganglia and action selection (Gurney et al 2001, 2004)
179. Prob. Inference of Short-Term Synaptic Plasticity in Neocort. Microcircuits (Costa et al. 2013)
180. Pyramidal neurons with mutated SCN2A gene (Nav1.2) (Ben-Shalom et al 2017)
181. Pyramidal neurons: IKHT offsets activation of IKLT to increase gain (Fernandez et al 2005)
182. Reconstrucing sleep dynamics with data assimilation (Sedigh-Sarvestani et al., 2012)
183. Reconstructing cerebellar granule layer evoked LFP using convolution (ReConv) (Diwakar et al. 2011)
184. Reflected SDE Hodgkin-Huxley Model (Dangerfield et al. 2012)
185. Reichardt Model for Motion Detection in the Fly Visual System (Tuthill et al, 2011)
186. Reinforcement Learning with Forgetting: Linking Sustained Dopamine to Motivation (Kato Morita 2016)
187. Relative spike time coding and STDP-based orientation selectivity in V1 (Masquelier 2012)
188. Reliability of Morris-Lecar neurons with added T, h, and AHP currents (Zeldenrust et al. 2013)
189. Respiratory control model with brainstem CPG and sensory feedback (Diekman, Thomas, and Wilson 2017)
190. Response properties of neocort. neurons to temporally modulated noisy inputs (Koendgen et al. 2008)
191. Reverse-time correlation analysis for idealized orientation tuning dynamics (Kovacic et al. 2008)
192. Revised opponent-channel model of auditory space cortical representation (Briley & Summerfield 2013)
193. Self-influencing synaptic plasticity (Tamosiunaite et al. 2007)
194. Simple and accurate Diffusion Approximation algor. for stochastic ion channels (Orio & Soudry 2012)
195. Simulating ion channel noise in an auditory brainstem neuron model (Schmerl & McDonnell 2013)
196. Single E-I oscillating network with amplitude modulation (Avella Gonzalez et al. 2012)
197. Single neuron with ion concentrations to model anoxic depolarization (Zandt et al. 2011)
198. Slow wave propagation in the guinea-pig gastric antrum (Hirst et al. 2006, Edwards and Hirst 2006)
199. Spatially-varying glutamate diffusion coefficient at CA1 synaptic cleft space (Gupta et al. 2016)
200. Spectral method and high-order finite differences for nonlinear cable (Omurtag and Lytton 2010)
201. Spike frequency adaptation in the LGMD (Peron and Gabbiani 2009)
202. Spike Response Model simulator (Jolivet et al. 2004, 2006, 2008)
203. Spike timing detection in different forms of LTD (Doi et al 2005)
204. Spiking GridPlaceMap model (Pilly & Grossberg, PLoS One, 2013)
205. Spiking neuron model of the basal ganglia (Humphries et al 2006)
206. State dependent drug binding to sodium channels in the dentate gyrus (Thomas & Petrou 2013)
207. Statistics of symmetry measure for networks of neurons (Esposito et al. 2014)
208. STDP allows fast rate-modulated coding with Poisson-like spike trains (Gilson et al. 2011)
209. Stochastic versions of the Hodgkin-Huxley equations (Goldwyn, Shea-Brown 2011)
210. Strategy for kinase transport by microtubules to nerve terminals (Koon et al. 2014)
211. Striatal dopamine ramping: an explanation by reinforcement learning with decay (Morita & Kato, 2014)
212. Striatal GABAergic microcircuit, dopamine-modulated cell assemblies (Humphries et al. 2009)
213. Striatal GABAergic microcircuit, spatial scales of dynamics (Humphries et al, 2010)
214. Structure-dynamics relationships in bursting neuronal networks revealed (Mäki-Marttunen et al. 2013)
215. Supervised learning with predictive coding (Whittington & Bogacz 2017)
216. Surround Suppression in V1 via Withdraw of Balanced Local Excitation in V1 (Shushruth 2012)
217. Sympathetic neuron (Wheeler et al 2004)
218. Sympathetic Preganglionic Neurone (Briant et al. 2014)
219. Synaptic plasticity can produce and enhance direction selectivity (Carver et al, 2008)
220. Synthesis of spatial tuning functions from theta cell spike trains (Welday et al., 2011)
221. Systems-level modeling of neuronal circuits for leech swimming (Zheng et al. 2007)
222. Temporal and spatial characteristics of vibrissa responses to motor commands (Simony et al. 2010)
223. Thalamic transformation of pallidal input (Hadipour-Niktarash 2006)
224. The activity phase of postsynaptic neurons (Bose et al 2004)
225. Theta phase precession in a model CA3 place cell (Baker and Olds 2007)
226. TTX-R Na+ current effect on cell response (Herzog et al 2001) (MATLAB)
227. Understanding odor information segregation in the olfactory bulb by MC/TCs (Polese et al. 2014)
228. Vesicular pool simulations of synaptic depression (Aristizabal and Glavinovic 2004)
229. Vestibulo-Ocular Reflex model in Matlab (Clopath at al. 2014)
230. Voltage-based STDP synapse (Clopath et al. 2010)
231. Working memory circuit with branched dendrites (Morita 2008)

Re-display model names with descriptions