| | Models |
| 1. |
A kinetic model of dopamine- and calcium-dependent striatal synaptic plasticity (Nakano et al. 2010)
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| 2. |
A model of cerebellar LTD including RKIP inactivation of Raf and MEK (Hepburn et al 2017)
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| 3. |
A multiscale approach to analyze circadian rhythms (Vasalou & Henson, 2010) (CellML)
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| 4. |
A multiscale approach to analyze circadian rhythms (Vasalou & Henson, 2010) (SBML)
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| 5. |
A systems model of Parkinson’s disease using biochemical systems theory (Sasidharakurup et al. 2017)
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| 6. |
Active dendrites shape signaling microdomains in hippocampal neurons (Basak & Narayanan 2018)
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| 7. |
An allosteric kinetics of NMDARs in STDP (Urakubo et al. 2008)
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| 8. |
An integrative dynamic model of brain energy metabolism (Coultier et al 2009)
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| 9. |
Boolean network-based analysis of the apoptosis network (Mai and Liu 2009)
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| 10. |
Ca(2+) oscillations based on Ca-induced Ca-release (Dupont et al 1991)
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| 11. |
Ca+/HCN channel-dependent persistent activity in multiscale model of neocortex (Neymotin et al 2016)
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| 12. |
CA1 oriens alveus interneurons: signaling properties (Minneci et al. 2007)
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| 13. |
CA1 pyramidal cell receptor dependent cAMP dynamics (Chay et al. 2016)
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| 14. |
Ca2+ oscillations in single astrocytes (Lavrentovich and Hemkin 2008) (python) (Manninen et al 2017)
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| 15. |
Ca2+ requirements for Long-Term Depression in Purkinje Cells (Criseida Zamora et al 2018)
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| 16. |
Calcium waves and mGluR-dependent synaptic plasticity in CA1 pyr. neurons (Ashhad & Narayanan 2013)
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| 17. |
CaMKII system exhibiting bistability with respect to calcium (Graupner and Brunel 2007)
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| 18. |
Cell signaling/ion channel variability effects on neuronal response (Anderson, Makadia, et al. 2015)
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| 19. |
Computational modeling of gephyrin-dependent inhibitory transsynaptic signaling (Lupascu et al 2020)
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| 20. |
Computational Modelling of TNFalpha Pathway in Parkinson's Disease (Sasidharakurup et al 2019)
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| 21. |
Dendritic spine geometry, spine apparatus organization: spatiotemporal Ca dynamics (Bell et al 2019)
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| 22. |
Differential interactions between Notch and ID factors control neurogenesis (Boareto et al 2017)
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| 23. |
Discrimination on behavioral time-scales mediated by reaction-diffusion in dendrites (Bhalla 2017)
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| 24. |
Dopamine activation of signaling pathways in a medium spiny projection neuron (Oliveira et al. 2012)
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| 25. |
Emergent properties of networks of biological signaling pathways (Bhalla, Iyengar 1999)
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| 26. |
Endocannabinoid dynamics gate spike-timing dependent depression and potentiation (Cui et al 2016)
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| 27. |
Endothelin action on pituitary latotrophs (Bertram et al. 2006)
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| 28. |
Excitation-contraction coupling/mitochondrial energetics (ECME) model (Cortassa et al. 2006)
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| 29. |
Firing neocortical layer V pyramidal neuron (Reetz et al. 2014; Stadler et al. 2014)
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| 30. |
Genetic, biochemical and bioelectrical dynamics in pattern regulation (Pietak & Levin 2017)
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| 31. |
Glutamate-evoked Ca2+ oscillations in single astrocytes (De Pitta et al. 2009) (Manninen et al 2017)
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| 32. |
Glutamate-evoked Ca2+ oscillations in single astrocytes (Modified from Dupont et al. 2011)
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| 33. |
Gq coupled signaling pathways involved in striatal synaptic plasticity (Kim et al. 2013)
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| 34. |
Hippocampus CA1: Simulations of LTP signaling pathways (Kim M et al. 2011)
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| 35. |
Hippocampus CA1: Temporal sensitivity of signaling pathways underlying LTP (Kim et al. 2010)
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| 36. |
Long term potentiation, LTP, protein synthesis, proteasome (Smolen et al. 2018)
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| 37. |
Model of a BDNF feedback loop (Zhang et al 2016)
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| 38. |
Model of AngII signaling and membrane electrophysiology (Makadia, Anderson, Fey et al., 2015)
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| 39. |
Model of calcium oscillations in olfactory cilia (Reidl et al. 2006)
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| 40. |
Model of DARPP-32 phosphorylation in striatal medium spiny neurons (Lindskog et al. 2006)
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| 41. |
Models of Na channels from a paper on the PKC control of I Na,P (Baker 2005)
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| 42. |
Moose/PyMOOSE: interoperable scripting in Python for MOOSE (Ray and Bhalla 2008)
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| 43. |
Multiscale model of olfactory receptor neuron in mouse (Dougherty 2009)
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| 44. |
Multiscale simulation of the striatal medium spiny neuron (Mattioni & Le Novere 2013)
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| 45. |
Olfactory bulb network: neurogenetic restructuring and odor decorrelation (Chow et al. 2012)
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| 46. |
Paired turbulence and light effect on calcium increase in Hermissenda (Blackwell 2004)
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| 47. |
Regulation of KCNQ2/KCNQ3 current by G protein cycling (Suh et al 2004)
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| 48. |
Reproducibility and comparability of models for astrocyte Ca2+ excitability (Manninen et al 2017)
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| 49. |
Rescue of plasticity by a computationally predicted protocol (Liu et al. 2013)
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| 50. |
Roles of essential kinases in induction of late hippocampal LTP (Smolen et al., 2006)
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| 51. |
Signaling pathways In D1R containing striatal spiny projection neurons (Blackwell et al 2018)
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| 52. |
Signaling pathways underlying LTP in hippocampal CA1 pyramidal cells (Jedrzejewska-Szmek et al 2017)
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| 53. |
Simulation of calcium signaling in fine astrocytic processes (Denizot et al 2019)
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| 54. |
Single-cell comprehensive biophysical model of SN pars compacta (Muddapu & Chakravarthy 2021)
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| 55. |
Spike timing detection in different forms of LTD (Doi et al 2005)
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| 56. |
Spontaneous calcium oscillations in astrocytes (Lavrentovich and Hemkin 2008)
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| 57. |
Spontaneous calcium oscillations in single astrocytes (Riera et al. 2011) (Manninen et al 2017)
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| 58. |
STDP and NMDAR Subunits (Gerkin et al. 2007)
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| 59. |
Stochastic model of the olfactory cilium transduction and adaptation (Antunes et al 2014)
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| 60. |
Strategy for kinase transport by microtubules to nerve terminals (Koon et al. 2014)
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| 61. |
Synchronization by D4 dopamine receptor-mediated phospholipid methylation (Kuznetsova, Deth 2008)
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