Spike exchange methods for a Blue Gene/P supercomputer (Hines et al., 2011)

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Accession:137845
Tests several spike exchange methods on a Blue Gene/P supercomputer on up to 64K cores.
Reference:
1 . Hines M, Kumar S, Schürmann F (2011) Comparison of neuronal spike exchange methods on a Blue Gene/P supercomputer. Front Comput Neurosci 5:49 [PubMed]
Model Information (Click on a link to find other models with that property)
Model Type: Realistic Network;
Brain Region(s)/Organism:
Cell Type(s):
Channel(s):
Gap Junctions:
Receptor(s):
Gene(s):
Transmitter(s):
Simulation Environment: NEURON;
Model Concept(s): Methods;
Implementer(s): Hines, Michael [Michael.Hines at Yale.edu];
bg() {
	echo "bg $1 $2 $3 $4 $5 $6 $7"
	sed "
s/^ncell = 10000$/ncell = 2^$2/
s/^ncon = 100$/ncon = $3/
s/^spikemode(0,0)$/spikemode($4,$5)/
" < init.hoc > init_.hoc
#/^want_all_spikes/d
#/^pnm.gatherspikes/d
#/^spike2file/d

rm -f out.dat
bgrun $7 $6 $1 init_.hoc
mv temp.$1 stdout$1.$2.$3.$4.$5
if test -f out.dat ; then
  sort -k 1n,1n -k 2n,2n out.dat > out$1.$2.$3.$4.$5
fi
}

if test "$1" != "" ; then
	bg $1 $2 $3 $4 $5 $6 $7
else
	bg 128 16 1000 0 0 R1002
	bg 256 16 1000 0 0 R1002 VN
	bg 128 16 1000 20 1 R1002
	bg 256 16 1000 20 1 R1002 VN
fi

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