Spike exchange methods for a Blue Gene/P supercomputer (Hines et al., 2011)

 Download zip file   Auto-launch 
Help downloading and running models
Accession:137845
Tests several spike exchange methods on a Blue Gene/P supercomputer on up to 64K cores.
Reference:
1 . Hines M, Kumar S, Schürmann F (2011) Comparison of neuronal spike exchange methods on a Blue Gene/P supercomputer. Front Comput Neurosci 5:49 [PubMed]
Model Information (Click on a link to find other models with that property)
Model Type: Realistic Network;
Brain Region(s)/Organism:
Cell Type(s):
Channel(s):
Gap Junctions:
Receptor(s):
Gene(s):
Transmitter(s):
Simulation Environment: NEURON;
Model Concept(s): Methods;
Implementer(s): Hines, Michael [Michael.Hines at Yale.edu];
/
Hines2011
dat
t0perf18.10k.16K.80.549+.21.0
t0perf18.10k.32K.80.549+.21.0
t0perf18.10k.64K.80.549+.21.0
t0perf18.10k.8K.80.548.2.0
t0perf19.10k.16K.80.549.9.0
t0perf20.10k.32K.80.549+.9.0
t0perf21.10k.64K.80.549+.9.0
t0perf21.1k.16K.80.549+.15.0
t0perf21.1k.32K.80.549+.15.0
t0perf21.1k.64K.80.549+.15.0
t0perf21.1k.8K.80.547+.3.0
t0perf21.1k.8K.80.548+.0.0
t0perf21.1k.8K.80.549.10.0
t0perf22.10k.128K.80.576+.1.0
t0perf22.1k.16K.80.549.3.0
t0perf23.1k.32K.80.549+.3.0
t0perf24.1k.64K.80.549+.3.0
t1perf18.10k.16K.93.549+.23.0
t1perf18.10k.32K.93.549+.23.0
t1perf18.10k.64K.93.549+.23.0
t1perf18.10k.8K.93.548.4.0
t1perf19.10k.16K.93.549.11.0
t1perf20.10k.32K.93.549+.11.0
t1perf21.10k.64K.93.549+.11.0
t1perf21.1k.16K.93.549+.17.0
t1perf21.1k.32K.93.549+.17.0
t1perf21.1k.64K.93.551.60.0
t1perf21.1k.8K.93.547+.5.0
t1perf22.10k.128K.93.576+.2.0
t1perf22.1k.16K.93.549.5.0
t1perf23.1k.32K.93.549+.5.0
t1perf24.1k.64K.93.549+.5.0
t1perf25.1k.128K.93.576+.3.0
t2perf18.10k.128K.94.577.11.0
t2perf18.10k.16K.94.549+.22.0
t2perf18.10k.32K.94.549+.22.0
t2perf18.10k.64K.94.549+.22.0
t2perf18.10k.8K.94.548.3.0
t2perf19.10k.16K.94.549.10.0
t2perf20.10k.32K.94.549+.10.0
t2perf21.10k.64K.82.552.0.0
t2perf21.10k.64K.86.549+.7.0
t2perf21.10k.64K.90.549+.31.0
t2perf21.10k.64K.94.549+.10.0
t2perf21.1k.128K.94.577.12.0
t2perf21.1k.16K.94.549+.16.0
t2perf21.1k.32K.94.549+.16.0
t2perf21.1k.64K.94.549+.16.0
t2perf21.1k.8K.94.547+.4.0
t2perf22.10k.128K.94.576.2.0
t2perf22.1k.16K.82.551+.0.0
t2perf22.1k.16K.86.550.0.0
t2perf22.1k.16K.90.552.0.0
t2perf22.1k.16K.94.549.4.0
t2perf22.1k.16K.94.550.0.0
t2perf23.1k.32K.94.549+.4.0
t2perf24.1k.64K.94.549+.4.0
t2perf25.1k.128K.94.576.0.0
t3perf18.10k.128K.83.577.10.0
t3perf18.10k.16K.83.551.60.0
t3perf18.10k.32K.83.551.61.0
t3perf18.10k.64K.83.551.62.0
t3perf18.10k.8K.83.551.60.0
t3perf19.10k.16K.83.551.62.0
t3perf20.10k.32K.83.551.63.0
t3perf21.10k.64K.83.549+.32.0
t3perf21.10k.64K.87.549+.6.0
t3perf21.1k.128K.83.577.13.0
t3perf21.1k.16K.83.549+.40.0
t3perf21.1k.32K.83.551.60.0
t3perf21.1k.64K.83.551.61.0
t3perf21.1k.8K.83.551.61.0
t3perf22.10k.128K.83.576+.0.0
t3perf22.1k.16K.83.551+.0.0
t3perf23.1k.32K.83.551.62.0
t3perf24.1k.64K.83.549+.24.0
t3perf24.1k.64K.87.542.0
t3perf25.1k.128K.83.576.1.0
                            
NEURON -- VERSION 7.2 twophase_multisend (549+:08f55733e693+) 2010-12-15
 '--prefix=/home/hines/neuron/replay' '--with-nrnpython' '--enable-bluegeneP' '--with-paranrn' '--with-multisend=allreplay' '--host=powerpc64-suse-linux' 'BG_BASE=/home/hines/BGP/IBM_V1R4M2/bgp/comm' 'BGlinux=/bgsys/drivers/ppcfloor/gnu-linux' 'CC=/home/hines/BGP/IBM_V1R4M2/bgp/comm/comm/bin/mpixlc' 'CXX=/home/hines/BGP/IBM_V1R4M2/bgp/comm/comm/bin/mpixlcxx' 'host_alias=powerpc64-suse-linux'
/gpfs/home/hines/perf1/powerpc64/special -mpi -c runs=3 runs.hoc
methodinfo 80
nhost 65536
MemSize 536870912
UsedMem 64874200
FreeMem 471996712
use2interval = -1
ncellpow = 21
ncon = 1000
nconrange = 100
mininvl = 20
maxinvl = 40
ranoffset_ = 1
connect_random_low_offset_ = 1
run_random_low_offset_ = 2
n_xcell = 0
use2phase = 0
burstfactor = 0.2
burstdur = 50
burstsize = 0
bgpdma = 0
compress_bufsize = 10
series = 1
binqueue = 1
selfqueue = 1
tstop = 200
spkfile = 0
done = 0
setuptime = 0.22
mkmodel_time = 0.84
setup_method_time = 0.43
set_maxstep_time = 0.02
stdinit_time = 0.0300002
runtime = 5.09
methodrun_time = 5.55
elapsed_time = 299.76
jobid = 0
seq = 15
@@@end header@@@
1207
3707754106
3707923659
3717050791
0
0
3717053845
3717453602
3717563307
3725416715
0
0
3725420497
3725594451
3725855139
3733673999
0
0
3733677289
3733850026
3734134956
3741999331
0
0
3742002849
3742179530
3742437799
3750262727
0
0
3750266297
3750441070
3750744493
3758576667
0
0
3758579461
3758752700
3759061293
3766877107
0
0
3766880065
3767053332
3767352853
3775194751
0
0
3775198049
3775372214
3775633607
3783460995
0
0
3783463917
3783635746
3783925175
3791758071
0
0
3791761025
3791937082
3792200629
3800038671
0
0
3800041793
3800215298
3800460197
3808294451
0
0
3808297481
3808473714
3808750127
3816590799
0
0
3816594021
3816768326
3817089759
3824909455
0
0
3824913057
3825089086
3825366049
3833178247
0
0
3833181849
3833351498
3833677541
3841490155
0
0
3841493437
3841663446
3841927135
3849745703
0
0
3849749089
3849923774
3850258001
3858086935
0
0
3858090513
3858263206
3858579329
3866425359
0
0
3866429193
3866602882
3866908365
3874731647
0
0
3874734537
3874907134
3875259003
3883084305
0
0
3883087357
3883284006
3883573539
3891413475
1
104811
3906907851
3909245255
3909421031
3917330099
3
104859
3932921917
3935311039
3935375725
3943319675
2
104874
3958935817
3961345219
3961357592
3969168083
1
104758
3984714469
3987123827
3987162767
3995029951
2
104795
4010618281
4012988967
4013056997
4020990727
2
104868
4036481073
4038810467
4038990793
4046907583
2
104810
4062452673
4064812195
4064907379
4072807993
1
105141
4088430757
4090804315
4090876939
4098685047
2
104709
4114204237
4116545591
4116675407
4124586767
1
104841
4140105609
4142427411
4142642345
4150567499
2
105014
4166089339
4168422359
4168585041
4176466663
2
105177
4191973541
4194310919
4194616183
4202533711
2
104839
4218031379
4220329831
4220603043
4228452859
2
104785
4243990715
4246361167
4246444169
4254331691
1
105041
4269914421
4272268903
4272414787
4280233853
2
104931
874307
3277843
3332339
11221023
1
104439
26663917
28899311
29168175
37094987
0
104720
52637273
54998347
55122697
63008541
2
105146
78601991
80977895
81002533
88947923
1
104594
104456059
106776623
106906029
114777459
0
2562
117030595
117256210
117279235
125222321
0
7773
129226481
129527414
129618377
137582095
1
13078
142838853
143270083
143413351
151382943
0
18253
157698465
158220235
158334695
166276511
0
23402
173437857
174075047
174115745
181988195
1
28919
189913269
190661019
190755655
198669079
2
34159
207321193
208227771
208240048
216200947
2
39468
225451959
226396187
226489141
234422831
0
44368
244088573
245140759
245258415
253131357
3
49763
263385769
264600291
264612480
272627615
2
54966
283321849
284622911
284635590
292684891
0
60097
303718655
305063971
305251603
313224699
2
65560
324767189
326222623
326387459
334300891
0
70963
346389907
348039727
348057572
355944671
0
76077
368368217
370054047
370315107
378290731
0
81283
391193941
393058795
393071292
428760404
0
86418
442117965
444032071
444044814
480527520
0
91972
494306711
496363099
496375668
533108246
0
96906
547244205
549338723
549368537
585899242
0
102083
600529275
602823279
602835924
639552730
0
102397
654144545
656377359
656418877
667436118
0
97448
681637613
683831043
683867879
692642561
1
92655
706414809
708469211
708588753
716488263
2
88042
729869633
731859811
731953517
739875371
1
84112
752937065
754813531
754970853
762938879
2
80138
775718533
777536831
777666133
785727779
3
76225
798248089
800035339
800047452
807953855
2
72757
820258197
821993091
822005162
829960851
5
70017
841968611
843593011
843664047
851604827
0
67140
863472463
865068159
865080430
873089987
1
64231
884771625
886326691
886339076
894344123
1
61720
905759755
907224959
907237502
915230911
4
59971
926563439
927972307
928026635
935904627
0
57855
947009217
948344155
948523193
956463233
1
56142
967384545
968637435
968884219
976946287
0
54682
987877957
989176027
989206969
997223831
3
54369
1008094165
1009320303
1009538265
1017443235
0
52894
1028208953
1029453007
1029572525
1037533383
0
52674
1048231187
1049434343
1049634619
1057597915
1
52590
1068385521
1069652987
1069670658
1077696509
1
55337
1088638895
1089893731
1090162899
1098086201
2
59588
1109545215
1110944707
1111077173
1118929487
0
63858
1130766991
1132228323
1132394622
1140361625
1
67571
1152543101
1154089927
1154181657
1162222491
0
70428
1174631561
1176236951
1176385717
1184304539
1
73497
1196974033
1198606167
1198782099
1206672991
0
75803
1219642075
1221421563
1221452957
1229324299
1
77527
1242405197
1244177783
1244363655
1252299679
0
79561
1265616501
1267471387
1267565029
1275423867
1
80635
1288823151
1290675163
1290765779
1298610379
0
81492
1312120903
1314045999
1314058408
1322038831
0
81501
1335490785
1337345607
1337443741
1345359807
1
81260
1358778843
1360647995
1360707149
1368568199
2
81286
1382038439
1383948407
1383960952
1391850911
0
80031
1405088235
1406829863
1407100631
1414997027
2
78874
1428216433
1430036647
1430079463
1437979255
3
77648
1450921477
1452569795
1452954355
1460842807
0
75857
1473699061
1475431211
1475586629
1483539295
3
73471
1496230375
1497932807
1498022195
1505927405
1
71184
1518351659
1519980155
1520155867
1528167947
6
68728
1540350357
1541885775
1542121495
1550031569
2
66449
1562025881
1563553527
1563709779
1571717181
2
65009
1583593235
1585079047
1585218935
1593187505
0
63953
1605018301
1606560075
1606572588
1614546051
2
62566
1626225093
1627680031
1627740053
1635690411
2
62392
1647287049
1648720279
1648844701
1656743775
0
62439
1668457515
1669971471
1669983342
1677993827
3
62045
1689640817
1691142703
1691162248
1699135867
0
62436
1710783203
1712241779
1712303655
1720212819
1
63091
1731862621
1733268083
1733535841
1741503931
0
63860
1753327955
1754840755
1754924689
1762896839
1
64783
1774760009
1776231919
1776452153
1784465867
0
65532
1796441211
1797973151
1798046163
1805991411
1
67416
1818108551
1819642419
1819823861
1827713461
0
68453
1839967973
1841550739
1841645667
1849584367
0
69188
1861894005
1863482659
1863621623
1871548139
1
70366
1883956565
1885568003
1885767625
1893724563
1
71609
1906312865
1907962163
1908016603
1915869447
1
72851
1928645829
1930383875
1930396242
1938350665
2
73612
1951120185
1952831887
1952916335
1960806851
0
74635
1973739945
1975482999
1975495530
1983452269
1
75085
1996321941
1998036643
1998131651
2006004237
2
75811
2018925509
2020617803
2020836227
2028835991
0
74875
2041621285
2043294411
2043558453
2051451763
4
75455
2064420169
2066218127
2066241795
2074143339
4
74680
2087006491
2088735147
2088808485
2096719879
2
73871
2109479159
2111183939
2111264123
2119353863
0
73322
2132080585
2133743883
2133845073
2141747757
0
72089
2154345895
2155969879
2156207853
2164161231
0
71298
2176657649
2178286087
2178430493
2186524523
3
70931
2199018069
2200625859
2200754845
2208656967
2
70026
2221033541
2222612695
2222809695
2230770039
2
69357
2243081657
2244651583
2244850471
2252758353
0
68086
2264995401
2266536219
2266664161
2274592451
0
67506
2286778541
2288324607
2288522779
2296463485
1
66814
2308581967
2310110251
2310239095
2318171875
1
66780
2330232037
2331697663
2331954207
2340040035
0
66519
2352218197
2353804067
2353888459
2361774739
1
66467
2373862429
2375349155
2375537811
2383400467
1
66086
2395518205
2397067447
2397155141
2405050087
0
66759
2417289685
2418879779
2418892154
2426865475
0
66377
2438997045
2440560891
2440626883
2448597143
2
67444
2460892129
2462515415
2462527596
2470400401
3
67984
2482682799
2484239035
2484362881
2492275915
0
68297
2504546617
2506099407
2506242703
2514143391
0
68970
2526538863
2528144327
2528187297
2536076115
2
69886
2548412397
2549917067
2550265837
2558246295
0
69752
2570708613
2572343439
2572389927
2580341145
0
71068
2593002889
2594692567
2594704910
2602563099
0
71701
2615196703
2616880687
2616981941
2624874757
2
71543
2637503805
2639161551
2639226309
2647084253
0
72477
2659823473
2661522295
2661556469
2669471455
5
72069
2682143905
2683811215
2683902127
2691758595
2
71809
2704406253
2706105215
2706136265
2714043631
1
72111
2726660321
2728260011
2728453455
2736350815
1
71855
2749008281
2750681487
2750768385
2758700471
0
71533
2771299389
2772959903
2773028691
2780945531
1
71640
2793585117
2795240367
2795381477
2803342203
1
71509
2815904785
2817508987
2817679857
2825666753
2
70998
2838238491
2839886987
2840074497
2847936943
0
70713
2860447629
2862075931
2862252777
2870223401
1
70362
2882693677
2884327539
2884454727
2892335651
4
69948
2904787869
2906408615
2906630579
2914609519
2
69665
2927047589
2928665163
2928761335
2936707723
1
69327
2949160913
2950780099
2950854717
2958819767
0
69106
2971183111
2972747095
2972963945
2980907263
0
68997
2993328165
2994949643
2995014417
3002887467
1
68902
3015253387
3016795931
3017036767
3024942187
0
68349
3037187263
3038723803
3038946863
3046855791
1
68746
3059161653
3060719535
3060918257
3068935435
2
68339
3081257511
3082824103
3082982295
3090890863
0
68335
3103167577
3104745043
3104868337
3112735247
1
68877
3125121275
3126735775
3126776259
3134733535
2
68684
3147117095
3148701739
3148764557
3156666331
0
68769
3169003541
3170602427
3170776493
3178665809
2
69499
3191098877
3192719215
3192803351
3200765089
2
69181
3213180305
3214793735
3214856847
3222834331
1
69823
3235220241
3236754595
3237005415
3244949669
1
69764
3257459055
3259128183
3259172399
3267146883
2
70119
3279649385
3281286107
3281341909
3289309327
0
70579
3301849709
3303455159
3303688283
3311523279
0
70761
3324008717
3325576207
3325859325
3333797471
1
71004
3346325929
3347901035
3348138411
3356022695
0
70495
3368547325
3370192719
3370252061
3378175751
5
70512
3390734691
3392384027
3392468817
3400358935
0
71103
3412968547
3414649823
3414661796
3422523311
1
70374
3435034409
3436669727
3436844003
3444836105
1
70797
3457432805
3459098251
3459144603
3467040885
1
70493
3479551641
3481172207
3481316213
3489350435
0
70037
3501886017
3503532131
3503544388
3511468421
0
70456
3523989765
3525648903
3525758043
3533645971
2
70109
3546025675
3547563639
3547905359
3555757891
2
70020
3568180723
3569764575
3569961079
3577886357
2
70233
3590377661
3592010715
3592072575
3599956715
0
69832
3612397181
3613983271
3614117745
3621966567
0
70007
3634515701
3636203299
3636215448
3644069455
2
70000
3656529279
3658117155
3658317643
3666248119
0
69931
3678771569
3680416999
3680496161
3688365659
4
69444
3700770193
3702333057
3702449447
3710334655
1
69308
3722702257
1.17647058823529e-09

0

Loading data, please wait...