Controlling KCa channels with different Ca2+ buffering models in Purkinje cell (Anwar et al. 2012)

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Accession:138382
In this work, we compare the dynamics of different buffering models during generation of a dendritic Ca2+ spike in a single compartment model of a Purkinje cell dendrite. The Ca2+ buffering models used are 1) a single Ca2+ pool, 2) two Ca2+ pools respectively for the fast and slow transients, 3) a detailed calcium model with buffers, pump (Schmidt et al., 2003), and diffusion and 4) a calcium model with buffers, pump and diffusion compensation. The parameters of single pool and double pool are tuned, using Neurofitter (Van Geit et al., 2007), to approximate the behavior of detailed calcium dynamics over range of 0.5 µM to 8 µM of intracellular calcium. The diffusion compensation is modeled using a buffer-like mechanism called DCM. To use DCM robustly for different diameter compartments, its parameters are estimated, using Neurofitter (Van Geit et al., 2007), as a function of compartment diameter (0.8 µm-20 µm).
Reference:
1 . Anwar H, Hong S, De Schutter E (2012) Controlling Ca2+-activated K+ channels with models of Ca2+ buffering in Purkinje cells. Cerebellum 11:681-93 [PubMed]
Model Information (Click on a link to find other models with that property)
Model Type: Dendrite;
Brain Region(s)/Organism:
Cell Type(s): Cerebellum Purkinje GABA cell;
Channel(s): I K,Ca; I Calcium;
Gap Junctions:
Receptor(s):
Gene(s):
Transmitter(s):
Simulation Environment: NEURON;
Model Concept(s): Calcium dynamics;
Implementer(s):
Search NeuronDB for information about:  Cerebellum Purkinje GABA cell; I K,Ca; I Calcium;
create dend

dend {
  nseg = 1
  L = 20
  diam = 4
}

dend {
  insert leak
  
  insert CALC_DP
  insert CALC2
  
  insert newCaP_DP
  insert mslo_DP
  insert CaT3_1_DP
  insert SK2_DP

  gbar_leak = 1e-6
  e_leak = -61
  cm = 1.5
  Ra = 250	
 	
  gbar_mslo_DP = 5.65e-2
  pcabar_newCaP_DP = 1.95e-4
  gkbar_SK2_DP = 4.68e-4
  pcabar_CaT3_1_DP = 7.43e-6

  beta_CALC_DP = 7.33
  beta_CALC2 = 0.00795

  d_CALC_DP = 0.167 
  d_CALC2 = 0.683 	

  vshift_newCaP_DP = 4.7

  frac1_newCaP_DP = 0.995
  frac2_newCaP_DP = 0.005

  frac1_CaT3_1_DP = 0.995
  frac2_CaT3_1_DP = 0.005

  frac1_SK2_DP = 0.995
  frac2_SK2_DP = 0.005 

  frac1_mslo_DP = 0.995  
  frac2_mslo_DP = 0.005  
	
}

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