Computational Surgery (Lytton et al. 2011)

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Accession:140881
Figure 2 in Neocortical simulation for epilepsy surgery guidance: Localization and intervention, by William W. Lytton, Samuel A. Neymotin, Jason C. Wester, and Diego Contreras in Computational Surgery and Dual Training, Springer, 2011
Reference:
1 . Lytton WW, Neymotin SA, Wester JC, Contreras D (2011) Neocortical simulation for epilepsy surgery guidance: Localization and intervention Computational Surgery and Dual Training
Model Information (Click on a link to find other models with that property)
Model Type: Realistic Network;
Brain Region(s)/Organism: Neocortex;
Cell Type(s): Neocortex fast spiking (FS) interneuron; Neocortex spiking regular (RS) neuron; Neocortex spiking low threshold (LTS) neuron;
Channel(s):
Gap Junctions:
Receptor(s):
Gene(s):
Transmitter(s):
Simulation Environment: NEURON;
Model Concept(s): Epilepsy;
Implementer(s): Lytton, William [billl at neurosim.downstate.edu];
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b11aug17
data
readme.txt
intf6_.mod *
misc.mod *
nstim.mod *
stats.mod *
vecst.mod *
col.hoc
declist.hoc *
decnqs.hoc *
decvec.hoc *
default.hoc *
drline.hoc *
gload.hoc
grvec.hoc
init.hoc
labels.hoc
local.hoc *
misc.h *
mosinit.hoc
network.hoc
nqs.hoc
nqs_utils.hoc *
nqsnet.hoc *
nrnoc.hoc *
params.hoc
run.hoc
setup.hoc *
simctrl.hoc *
spkts.hoc *
stats.hoc
stdgui.hoc *
syncode.hoc
                            
This simulation was tested/developed on LINUX systems, but may run on Microsoft Windows or Mac OS.
To run, you will need the NEURON simulator (available at http://www.neuron.yale.edu)
Unzip the contents of the zip file to a new directory.
to compile & run:
 nrnivmodl *.mod
 nrngui mosinit.hoc -

Simulation will run for 1 s and spike output from excitatory cells of each column will be displayed. The spike
raster is arranged with y-axis as cell identifier and x-axis as time in milliseconds.
The y-axis is further arranged in order of layer/type, where each type is displayed
with a different color (black:layer 2/3, red:layer 4, green:layer 5a, blue:layer 5b).

Reference:
 This simulation is Figure 2 in
 Neocortical simulation for epilepsy surgery guidance: Localization and intervention,
 by William W. Lytton, Samuel A. Neymotin, Jason C. Wester, and Diego Contreras
 in Computational Surgery and Dual Training, Springer, 2011

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