Large scale model of the olfactory bulb (Yu et al., 2013)

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Accession:144570
The readme file currently contains links to the results for all the 72 odors investigated in the paper, and the movie showing the network activity during learning of odor k3-3 (an aliphatic ketone).
Reference:
1 . Yu Y, McTavish TS, Hines ML, Shepherd GM, Valenti C, Migliore M (2013) Sparse distributed representation of odors in a large-scale olfactory bulb circuit. PLoS Comput Biol 9:e1003014 [PubMed]
Model Information (Click on a link to find other models with that property)
Model Type: Realistic Network; Channel/Receptor; Dendrite;
Brain Region(s)/Organism: Olfactory bulb;
Cell Type(s): Olfactory bulb main mitral GLU cell; Olfactory bulb main interneuron granule MC GABA cell;
Channel(s): I Na,t; I A; I K;
Gap Junctions:
Receptor(s): NMDA; Glutamate; Gaba;
Gene(s):
Transmitter(s): Gaba; Glutamate;
Simulation Environment: NEURON;
Model Concept(s): Pattern Recognition; Activity Patterns; Bursting; Temporal Pattern Generation; Oscillations; Synchronization; Active Dendrites; Detailed Neuronal Models; Synaptic Plasticity; Action Potentials; Synaptic Integration; Unsupervised Learning; Olfaction;
Implementer(s): Hines, Michael [Michael.Hines at Yale.edu]; Migliore, Michele [Michele.Migliore at Yale.edu];
Search NeuronDB for information about:  Olfactory bulb main mitral GLU cell; Olfactory bulb main interneuron granule MC GABA cell; NMDA; Glutamate; Gaba; I Na,t; I A; I K; Gaba; Glutamate;
/
YuEtAl2012
readme.html
ampanmda.mod
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TITLE K-A
: K-A current for Mitral Cells from Wang et al (1996)
: M.Migliore Jan. 2002

NEURON {
    THREADSAFE
	SUFFIX kamt
	USEION k READ ek WRITE ik
	RANGE  gbar
	GLOBAL minf, mtau, hinf, htau
}

PARAMETER {
	gbar = 0.002   	(mho/cm2)	
								
	celsius
	ek		(mV)            : must be explicitly def. in hoc
	v 		(mV)
	a0m=0.04
	vhalfm=-45
	zetam=0.1
	gmm=0.75

	a0h=0.018
	vhalfh=-70
	zetah=0.2
	gmh=0.99

	sha=9.9
	shi=5.7
	
	q10=3
}


UNITS {
	(mA) = (milliamp)
	(mV) = (millivolt)
	(pS) = (picosiemens)
	(um) = (micron)
} 

ASSIGNED {
	ik 		(mA/cm2)
	minf 		mtau (ms)	 	
	hinf 		htau (ms)	 	
}
 

STATE { m h}

BREAKPOINT {
        SOLVE states METHOD cnexp
	ik = gbar*m*h*(v - ek)
} 

INITIAL {
	trates(v)
	m=minf  
	h=hinf  
}

DERIVATIVE states {   
        trates(v)      
        m' = (minf-m)/mtau
        h' = (hinf-h)/htau
}

PROCEDURE trates(v) {  
	LOCAL qt
        qt=q10^((celsius-24)/10)
        minf = 1/(1 + exp(-(v-sha-7.6)/14))
	mtau = betm(v)/(qt*a0m*(1+alpm(v)))

        hinf = 1/(1 + exp((v-shi+47.4)/6))
	htau = beth(v)/(qt*a0h*(1+alph(v)))
}

FUNCTION alpm(v(mV)) {
  alpm = exp(zetam*(v-vhalfm)) 
}

FUNCTION betm(v(mV)) {
  betm = exp(zetam*gmm*(v-vhalfm)) 
}

FUNCTION alph(v(mV)) {
  alph = exp(zetah*(v-vhalfh)) 
}

FUNCTION beth(v(mV)) {
  beth = exp(zetah*gmh*(v-vhalfh)) 
}

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