Neurite: electrophysiological-mechanical coupling simulation framework (Garcia-Grajales et al 2015)

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Accession:168861
Neurite simulates the electrical signal propagation in myelinated and unmyelinated axons, and in dendritic trees under mechanical loading. Two different solvers are available (explicit and implicit) with sequential (CPU) and parallel (GPUs) versions
Reference:
1 . Garci­a-Grajales JA, Rucabado G, Garci­a-Dopico A, Pena JM, Jerusalem A (2015) Neurite, a Finite Difference Large Scale Parallel Program for the Simulation of Electrical Signal Propagation in Neurites under Mechanical Loading. PLoS One 10(2):e0116532 [PubMed]
Model Information (Click on a link to find other models with that property)
Model Type: Axon; Dendrite;
Brain Region(s)/Organism:
Cell Type(s): Myelinated neuron;
Channel(s): I Sodium; I Potassium;
Gap Junctions:
Receptor(s):
Gene(s):
Transmitter(s):
Simulation Environment: C or C++ program;
Model Concept(s): Action Potential Initiation; Axonal Action Potentials; Action Potentials;
Implementer(s): Garcia-Grajales, Julian Andres ;
Search NeuronDB for information about:  I Sodium; I Potassium;
  
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Neurite_Public
applications
bin
build
doc
inc
others
src
README.txt
license.txt
Makefile
                            
Neurite is a program with wich the simulations shown in the paper
J.A. Garcia-Grajales, G. Rucabado, A. Garcia-Dopico, J.M. Pena and
A. Jerusalem, "Neurite, a finite difference large scale parallel
program for the simulation of the electrical signal propagation in
neurites under mechanical loading", García-Grajales JA, Rucabado G,
García-Dopico A, Peña J-M, Jérusalem A (2015), PLoS ONE 10(2):
e0116532. doi:10.1371/journal.pone.0116532, have been carried out.

Neurite is a finite difference program that simulates the electrical
signal propagation in myelinated and unmyelinated axons, and in
dendritic trees under mechanical loading. The program has two
different solvers---explicit and implicit---that can be executed
sequentially with a CPU processor or in parallel with GPU
accelerators.

To compile the code in UNIX system, type "make" in the root directory
(see in the Makefile for more compiling options). To execute a
simulation, go in the applications folder and follow the Readme.

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