Allen Institute: Rorb-IRES2-Cre-D VISp layer 5 473561660

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Accession:184314
This is an Allen Cell Types Database model of a Rorb-IRES2-Cre-D neuron from layer 5 of the mouse primary visual cortex. The model was based on a traced morphology after filling the cell with biocytin and optimized using experimental electrophysiology data recorded from the same cell. The electrophysiology data was collected in a highly standardized way to facilitate comparison across all cells in the database. The model was optimized by a genetic algorithm that adjusted the densities of conductances placed at the soma to match experimentally-measured features of action potential firing. Data and models from the Allen Cell Types Database are made available to the community under the Allen Institute's Terms of Use and Citation Policy.
Reference:
1 . Allen Institute (2015) Documentation Allen Cell Types Database
Model Information (Click on a link to find other models with that property)
Model Type: Neuron or other electrically excitable cell;
Brain Region(s)/Organism: Neocortex;
Cell Type(s): Neocortex layer 5 interneuron;
Channel(s): I Na,p; I Na,t; I L high threshold; I T low threshold; I A; I K; I M; I h; I K,Ca;
Gap Junctions:
Receptor(s):
Gene(s):
Transmitter(s):
Simulation Environment: NEURON; Python;
Model Concept(s): Parameter Fitting; Calcium dynamics; Vision;
Implementer(s):
Search NeuronDB for information about:  I Na,p; I Na,t; I L high threshold; I T low threshold; I A; I K; I M; I h; I K,Ca;
Files displayed below are from the implementation
/
473561660
x86_64
.libs
Ca_HVA.mod *
Ca_LVA.mod *
CaDynamics.mod *
Ih.mod *
Im.mod *
Im_v2.mod *
K_P.mod *
K_T.mod *
Kd.mod *
Kv2like.mod *
Kv3_1.mod *
Nap.mod *
NaTa.mod *
NaTs.mod *
NaV.mod *
SK.mod *
Ca_HVA.c
Ca_HVA.lo
Ca_LVA.c
Ca_LVA.lo
CaDynamics.c
CaDynamics.lo
Ih.c
Ih.lo
Im.c
Im.lo
Im_v2.c
Im_v2.lo
K_P.c
K_P.lo
K_T.c
K_T.lo
Kd.c
Kd.lo
Kv2like.c
Kv2like.lo
Kv3_1.c
Kv3_1.lo
libnrnmech.la *
mod_func.c
mod_func.lo
Nap.c
Nap.lo
NaTa.c
NaTa.lo
NaTs.c
NaTs.lo
NaV.c
NaV.lo
SK.c
SK.lo
special
                            
#include <stdio.h>
#include "hocdec.h"
extern int nrnmpi_myid;
extern int nrn_nobanner_;

extern void _CaDynamics_reg(void);
extern void _Ca_HVA_reg(void);
extern void _Ca_LVA_reg(void);
extern void _Ih_reg(void);
extern void _Im_reg(void);
extern void _Im_v2_reg(void);
extern void _K_P_reg(void);
extern void _K_T_reg(void);
extern void _Kd_reg(void);
extern void _Kv2like_reg(void);
extern void _Kv3_1_reg(void);
extern void _NaTa_reg(void);
extern void _NaTs_reg(void);
extern void _NaV_reg(void);
extern void _Nap_reg(void);
extern void _SK_reg(void);

void modl_reg(){
  if (!nrn_nobanner_) if (nrnmpi_myid < 1) {
    fprintf(stderr, "Additional mechanisms from files\n");

    fprintf(stderr," modfiles/CaDynamics.mod");
    fprintf(stderr," modfiles/Ca_HVA.mod");
    fprintf(stderr," modfiles/Ca_LVA.mod");
    fprintf(stderr," modfiles/Ih.mod");
    fprintf(stderr," modfiles/Im.mod");
    fprintf(stderr," modfiles/Im_v2.mod");
    fprintf(stderr," modfiles/K_P.mod");
    fprintf(stderr," modfiles/K_T.mod");
    fprintf(stderr," modfiles/Kd.mod");
    fprintf(stderr," modfiles/Kv2like.mod");
    fprintf(stderr," modfiles/Kv3_1.mod");
    fprintf(stderr," modfiles/NaTa.mod");
    fprintf(stderr," modfiles/NaTs.mod");
    fprintf(stderr," modfiles/NaV.mod");
    fprintf(stderr," modfiles/Nap.mod");
    fprintf(stderr," modfiles/SK.mod");
    fprintf(stderr, "\n");
  }
  _CaDynamics_reg();
  _Ca_HVA_reg();
  _Ca_LVA_reg();
  _Ih_reg();
  _Im_reg();
  _Im_v2_reg();
  _K_P_reg();
  _K_T_reg();
  _Kd_reg();
  _Kv2like_reg();
  _Kv3_1_reg();
  _NaTa_reg();
  _NaTs_reg();
  _NaV_reg();
  _Nap_reg();
  _SK_reg();
}

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