Cerebellum granule cell FHF (Dover et al. 2016)

 Download zip file   Auto-launch 
Help downloading and running models
Accession:206267
"Neurons in vertebrate central nervous systems initiate and conduct sodium action potentials in distinct subcellular compartments that differ architecturally and electrically. Here, we report several unanticipated passive and active properties of the cerebellar granule cell's unmyelinated axon. Whereas spike initiation at the axon initial segment relies on sodium channel (Nav)-associated fibroblast growth factor homologous factor (FHF) proteins to delay Nav inactivation, distal axonal Navs show little FHF association or FHF requirement for high-frequency transmission, velocity and waveforms of conducting action potentials. ...'
Reference:
1 . Dover K, Marra C, Solinas S, Popovic M, Subramaniyam S, Zecevic D, D'Angelo E, Goldfarb M (2016) FHF-independent conduction of action potentials along the leak-resistant cerebellar granule cell axon. Nat Commun 7:12895 [PubMed]
Model Information (Click on a link to find other models with that property)
Model Type: Axon; Dendrite;
Brain Region(s)/Organism: Cerebellum;
Cell Type(s): Cerebellum interneuron granule cell;
Channel(s): I A; I Calcium; I K; I K,Ca; I M; I Na,p; I Na,t; I Potassium; I Sodium; Kir;
Gap Junctions:
Receptor(s): AMPA; Gaba; NMDA;
Gene(s):
Transmitter(s):
Simulation Environment: NEURON;
Model Concept(s):
Implementer(s): Solinas, Sergio [solinas at unipv.it]; Subramaniyam, Sathyaa [sakthisathyaa at gmail.com]; D'Angelo, Egidio [dangelo at unipv.it]; Goldfarb, Mitchell goldfarb at genectr.hunter.cuny.edu];
Search NeuronDB for information about:  Cerebellum interneuron granule cell; AMPA; NMDA; Gaba; I Na,p; I Na,t; I A; I K; I M; I K,Ca; I Sodium; I Calcium; I Potassium; Kir;
/
GrC_FHF_ModelDB
images
README.html
AmpaCOD.mod
GRC_CA.mod *
GRC_CALC.mod *
GRC_GABA.mod *
GRC_KA.mod *
GRC_KCA.mod *
GRC_KIR.mod *
GRC_KM.mod
GRC_KV.mod *
GRC_LKG1.mod *
GRC_LKG2.mod *
GRC_LKG3.mod
GRC_NA.mod
Grc_sine.mod
NmdaS.mod
Pregen.mod *
CClamp_soma.ses
ComPanel.hoc
Fig5.ses
Grc_Cell.hoc
helper_procedures.hoc
Ina.ses
KOFHF.DAPF.slowalfabeta.REV5.30.2016.ses
modComPanel.hoc
mosinit.hoc
Parametri.hoc
Start.hoc
WTFHF.DAPF.slowalfabeta.REV5.30.2016.ses
                            
TITLE Cerebellum Granule Cell Model

COMMENT
        CaHVA channel
   
	Author: E.D'Angelo, T.Nieus, A. Fontana
	Last revised: 8.5.2000
ENDCOMMENT
 
NEURON { 
	SUFFIX GRC_CA 
	USEION ca READ eca WRITE ica 
	RANGE gcabar, ica, g, alpha_s, beta_s, alpha_u, beta_u 
	RANGE Aalpha_s, Kalpha_s, V0alpha_s
	RANGE Abeta_s, Kbeta_s, V0beta_s
	RANGE Aalpha_u, Kalpha_u, V0alpha_u
	RANGE Abeta_u, Kbeta_u, V0beta_u
	RANGE s_inf, tau_s, u_inf, tau_u 
} 
 
UNITS { 
	(mA) = (milliamp) 
	(mV) = (millivolt) 
} 
 
PARAMETER { 
:Kalpha_s = 0.063 (/mV)  Checked!
:Kbeta_s = -0.039 (/mV) Checked!
:Kalpha_u = -0.055 (/mV) Checked!
:Kbeta_u = 0.012 (/mV) Checked!


	Aalpha_s = 0.04944 (/ms)
	Kalpha_s =  15.87301587302 (mV)
	V0alpha_s = -29.06 (mV)
	
	Abeta_s = 0.08298 (/ms)
	Kbeta_s =  -25.641 (mV)
	V0beta_s = -18.66 (mV)
	
	

	Aalpha_u = 0.0013 (/ms)
	Kalpha_u =  -18.183 (mV)
	V0alpha_u = -48 (mV)
		
	Abeta_u = 0.0013 (/ms)
	Kbeta_u =   83.33 (mV)
	V0beta_u = -48 (mV)

	v (mV) 
	gcabar= 0.00046 (mho/cm2) 
	eca = 129.33 (mV) 
	celsius = 30 (degC) 
} 

STATE { 
	s 
	u 
} 

ASSIGNED { 
	ica (mA/cm2) 
	s_inf 
	u_inf 
	tau_s (ms) 
	tau_u (ms) 
	g (mho/cm2) 
	alpha_s (/ms)
	beta_s (/ms)
	alpha_u (/ms)
	beta_u (/ms)
} 
 
INITIAL { 
	rate(v) 
	s = s_inf 
	u = u_inf 
} 
 
BREAKPOINT { 
	SOLVE states METHOD derivimplicit 
	g = gcabar*s*s*u 
	ica = g*(v - eca) 
	alpha_s = alp_s(v)
	beta_s = bet_s(v)
	alpha_u = alp_u(v)
	beta_u = bet_u(v)
}
 
DERIVATIVE states { 
	rate(v) 
	s' =(s_inf - s)/tau_s 
	u' =(u_inf - u)/tau_u 
} 
 
FUNCTION alp_s(v(mV))(/ms) { LOCAL Q10
	Q10 = 3^((celsius-20(degC))/10(degC))
	alp_s = Q10*Aalpha_s*exp((v-V0alpha_s)/Kalpha_s) 
} 
 
FUNCTION bet_s(v(mV))(/ms) { LOCAL Q10
	Q10 = 3^((celsius-20(degC))/10(degC))
	bet_s = Q10*Abeta_s*exp((v-V0beta_s)/Kbeta_s) 
} 
 
FUNCTION alp_u(v(mV))(/ms) { LOCAL Q10
	Q10 = 3^((celsius-20(degC))/10(degC))
	alp_u = Q10*Aalpha_u*exp((v-V0alpha_u)/Kalpha_u) 
} 
 
FUNCTION bet_u(v(mV))(/ms) { LOCAL Q10
	Q10 = 3^((celsius-20(degC))/10(degC))
	bet_u = Q10*Abeta_u*exp((v-V0beta_u)/Kbeta_u) 
} 
 
PROCEDURE rate(v (mV)) {LOCAL a_s, b_s, a_u, b_u 
	TABLE s_inf, tau_s, u_inf, tau_u 
	DEPEND Aalpha_s, Kalpha_s, V0alpha_s, 
	       Abeta_s, Kbeta_s, V0beta_s,
               Aalpha_u, Kalpha_u, V0alpha_u,
               Abeta_u, Kbeta_u, V0beta_u, celsius FROM -100 TO 30 WITH 13000 
	a_s = alp_s(v)  
	b_s = bet_s(v) 
	a_u = alp_u(v)  
	b_u = bet_u(v) 
	s_inf = a_s/(a_s + b_s) 
	tau_s = 1/(a_s + b_s) 
	u_inf = a_u/(a_u + b_u) 
	tau_u = 1/(a_u + b_u) 
}


Loading data, please wait...