Cerebellum granule cell FHF (Dover et al. 2016)

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Accession:206267
"Neurons in vertebrate central nervous systems initiate and conduct sodium action potentials in distinct subcellular compartments that differ architecturally and electrically. Here, we report several unanticipated passive and active properties of the cerebellar granule cell's unmyelinated axon. Whereas spike initiation at the axon initial segment relies on sodium channel (Nav)-associated fibroblast growth factor homologous factor (FHF) proteins to delay Nav inactivation, distal axonal Navs show little FHF association or FHF requirement for high-frequency transmission, velocity and waveforms of conducting action potentials. ...'
Reference:
1 . Dover K, Marra C, Solinas S, Popovic M, Subramaniyam S, Zecevic D, D'Angelo E, Goldfarb M (2016) FHF-independent conduction of action potentials along the leak-resistant cerebellar granule cell axon. Nat Commun 7:12895 [PubMed]
Model Information (Click on a link to find other models with that property)
Model Type: Axon; Dendrite;
Brain Region(s)/Organism: Cerebellum;
Cell Type(s): Cerebellum interneuron granule cell;
Channel(s): I A; I Calcium; I K; I K,Ca; I M; I Na,p; I Na,t; I Potassium; I Sodium; Kir;
Gap Junctions:
Receptor(s): AMPA; Gaba; NMDA;
Gene(s):
Transmitter(s):
Simulation Environment: NEURON;
Model Concept(s):
Implementer(s): Solinas, Sergio [solinas at unipv.it]; Subramaniyam, Sathyaa [sakthisathyaa at gmail.com]; D'Angelo, Egidio [dangelo at unipv.it]; Goldfarb, Mitchell goldfarb at genectr.hunter.cuny.edu];
Search NeuronDB for information about:  Cerebellum interneuron granule cell; AMPA; NMDA; Gaba; I Na,p; I Na,t; I A; I K; I M; I K,Ca; I Sodium; I Calcium; I Potassium; Kir;
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GrC_FHF_ModelDB
images
README.html
AmpaCOD.mod
GRC_CA.mod *
GRC_CALC.mod *
GRC_GABA.mod *
GRC_KA.mod *
GRC_KCA.mod *
GRC_KIR.mod *
GRC_KM.mod
GRC_KV.mod *
GRC_LKG1.mod *
GRC_LKG2.mod *
GRC_LKG3.mod
GRC_NA.mod
Grc_sine.mod
NmdaS.mod
Pregen.mod *
CClamp_soma.ses
ComPanel.hoc
Fig5.ses
Grc_Cell.hoc
helper_procedures.hoc
Ina.ses
KOFHF.DAPF.slowalfabeta.REV5.30.2016.ses
modComPanel.hoc
mosinit.hoc
Parametri.hoc
Start.hoc
WTFHF.DAPF.slowalfabeta.REV5.30.2016.ses
                            
TITLE Cerebellum Granule Cell Model

COMMENT
        KCa channel
   
	Author: E.D'Angelo, T.Nieus, A. Fontana
	Last revised: 8.5.2000
ENDCOMMENT
 
NEURON { 
	SUFFIX GRC_KCA
	USEION k READ ek WRITE ik 
	USEION ca READ cai
	RANGE gkbar, ik, ica, g, alpha_c, beta_c
	RANGE Aalpha_c, Balpha_c, Kalpha_c
	RANGE Abeta_c, Bbeta_c, Kbeta_c 
	RANGE c_inf, tau_c 
} 
 
UNITS { 
	(mA) = (milliamp) 
	(mV) = (millivolt) 
	(molar) = (1/liter)
	(mM) = (millimolar)
} 
 
PARAMETER { 
	Aalpha_c = 2.5 (/ms)
	Balpha_c = 1.5e-3 (mM)

	:Kalpha_c = -0.085 (/mV)
	Kalpha_c =  -11.765 (mV)

	Abeta_c = 1.5 (/ms)
	Bbeta_c = 0.15e-3 (mM)

	:Kbeta_c = -0.085 (/mV)
	Kbeta_c = -11.765 (mV)

	v (mV) 
	cai (mM)
	gkbar= 0.003 (mho/cm2) 
	ek = -84.69 (mV) 
	celsius = 30 (degC) 
} 

STATE { 
	c 
} 

ASSIGNED { 
	ik (mA/cm2) 
	ica (mA/cm2)

	c_inf 
	tau_c (ms) 
	g (mho/cm2) 
	alpha_c (/ms) 
	beta_c (/ms) 
} 
 
INITIAL { 
	rate(v) 
	c = c_inf 
} 
 
BREAKPOINT { 
	SOLVE states METHOD derivimplicit 
	g = gkbar*c 
	ik = g*(v - ek) 
	alpha_c = alp_c(v) 
	beta_c = bet_c(v) 
} 
 
DERIVATIVE states { 
	rate(v) 
	c' =(c_inf - c)/tau_c 
} 
 
FUNCTION alp_c(v(mV))(/ms) { LOCAL Q10
	Q10 = 3^((celsius-30(degC))/10(degC))
	alp_c = Q10*Aalpha_c/(1+(Balpha_c*exp(v/Kalpha_c)/cai)) 
} 
 
FUNCTION bet_c(v(mV))(/ms) { LOCAL Q10
	Q10 = 3^((celsius-30(degC))/10(degC))
	bet_c = Q10*Abeta_c/(1+cai/(Bbeta_c*exp(v/Kbeta_c))) 
} 
 
PROCEDURE rate(v (mV)) {LOCAL a_c, b_c 
	TABLE c_inf, tau_c 
	DEPEND Aalpha_c, Balpha_c, Kalpha_c, 
	       Abeta_c, Bbeta_c, Kbeta_c, celsius FROM -100 TO 30 WITH 13000 
	a_c = alp_c(v)  
	b_c = bet_c(v) 
	tau_c = 1/(a_c + b_c) 
	c_inf = a_c/(a_c + b_c) 
} 


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