Distinct current modules shape cellular dynamics in model neurons (Alturki et al 2016)

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Accession:223649
" ... We hypothesized that currents are grouped into distinct modules that shape specific neuronal characteristics or signatures, such as resting potential, sub-threshold oscillations, and spiking waveforms, for several classes of neurons. For such a grouping to occur, the currents within one module should have minimal functional interference with currents belonging to other modules. This condition is satisfied if the gating functions of currents in the same module are grouped together on the voltage axis; in contrast, such functions are segregated along the voltage axis for currents belonging to different modules. We tested this hypothesis using four published example case models and found it to be valid for these classes of neurons. ..."
Reference:
1 . Alturki A, Feng F, Nair A, Guntu V, Nair SS (2016) Distinct current modules shape cellular dynamics in model neurons. Neuroscience 334:309-331 [PubMed]
Model Information (Click on a link to find other models with that property)
Model Type: Neuron or other electrically excitable cell;
Brain Region(s)/Organism: Hippocampus; Amygdala;
Cell Type(s): Abstract single compartment conductance based cell;
Channel(s):
Gap Junctions:
Receptor(s):
Gene(s):
Transmitter(s):
Simulation Environment: NEURON;
Model Concept(s): Simplified Models; Activity Patterns; Oscillations; Methods; Olfaction;
Implementer(s):
/
AlturkiEtAl2016
1_Hemond
Original
readme.html *
cacumm.mod *
cagk.mod *
cal2.mod *
can2.mod *
cat.mod *
distr.mod *
h.mod *
KahpM95.mod *
kaprox.mod *
kd.mod *
kdrca1.mod *
km.mod *
na3n.mod *
naxn.mod *
ca3b-cell1zr.hoc *
ca3b-cell1zr.ses *
fixnseg.hoc *
geo-cell1zr.hoc *
mosinit_orig.hoc *
screenshot.jpg *
                            
:Migliore file Modify by Maciej Lazarewicz (mailto:mlazarew@gmu.edu) May/16/2001

TITLE Borg-Graham type generic K-AHP channel

NEURON {
	SUFFIX KahpM95
	USEION k READ ek WRITE ik
        USEION ca READ cai
        RANGE  gbar,ik, gkahp
        GLOBAL inf,tau
}

UNITS {
	(mA) = (milliamp)
	(mV) = (millivolt)
}

PARAMETER {
	celsius = 6.3	(degC)
	gbar	= .003 	(mho/cm2)
        n	= 4
        cai	= 50.e-6 (mM)
        a0	= 1e8 (/ms-mM-mM-mM-mM)		:b0/(20e-4^4)
        b0	= .5e-2  (/ms)			:0.5/(0.100e3)
        v       	 (mV)
        ek      	 (mV)
	q10=3
}

STATE {	w }

ASSIGNED {
	ik 		(mA/cm2)
        gkahp  		(mho/cm2)
        inf
        tau
}

BREAKPOINT {
	SOLVE state METHOD cnexp
	gkahp = gbar*w
	ik = gkahp*(v-ek)
}

INITIAL {
	rate(cai)
	w=inf
}

FUNCTION alp(cai (mM)) {
  alp = a0*cai^n
}

DERIVATIVE state {     : exact when v held constant; integrates over dt step
        rate(cai)
        w' = (inf - w)/tau
}

PROCEDURE rate(cai (mM)) { :callable from hoc
        LOCAL a,qt
        qt=q10^((celsius-24)/10)
        a = alp(cai)
        tau = 1/(qt*(a + b0))
        inf = a*tau*qt
}






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