CA1 pyr cell: Inhibitory modulation of spatial selectivity+phase precession (Grienberger et al 2017)

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Accession:225080
Spatially uniform synaptic inhibition enhances spatial selectivity and temporal coding in CA1 place cells by suppressing broad out-of-field excitation.
Reference:
1 . Grienberger C, Milstein AD, Bittner KC, Romani S, Magee JC (2017) Inhibitory suppression of heterogeneously tuned excitation enhances spatial coding in CA1 place cells. Nat Neurosci 20:417-426 [PubMed]
Model Information (Click on a link to find other models with that property)
Model Type: Neuron or other electrically excitable cell; Realistic Network;
Brain Region(s)/Organism: Hippocampus;
Cell Type(s): Hippocampus CA1 pyramidal GLU cell;
Channel(s):
Gap Junctions:
Receptor(s): NMDA;
Gene(s):
Transmitter(s):
Simulation Environment: NEURON; Python;
Model Concept(s): Active Dendrites; Detailed Neuronal Models; Place cell/field; Synaptic Integration; Short-term Synaptic Plasticity; Spatial Navigation; Feature selectivity;
Implementer(s): Milstein, Aaron D. [aaronmil at stanford.edu];
Search NeuronDB for information about:  Hippocampus CA1 pyramidal GLU cell; NMDA;
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GrienbergerEtAl2017
morphologies
readme.txt
ampa_kin.mod *
exp2EPSC.mod
exp2EPSG.mod
exp2EPSG_NMDA.mod
gaba_a_kin.mod *
h.mod
kad.mod *
kap.mod *
kdr.mod *
km2.mod
nas.mod
nax.mod
nmda_kin2.mod
nmda_kin3.mod
nmda_kin5.mod *
pr.mod *
vecevent.mod *
batch_EPSP_attenuation.sh
batch_place_cell_r_inp.sh
batch_place_cell_record_i_syn.sh
batch_place_cell_single_compartment.sh
batch_place_cell_subtr_inh.sh
batch_place_cell_subtr_inh_shifted.sh
batch_place_cell_subtr_inh_vclamp.sh
batch_process_i_syn_files.sh
batch_rinp.sh
batch_spine_attenuation_ratio.sh
build_expected_EPSP_reference.sh
build_expected_EPSP_reference_controller.py
build_expected_EPSP_reference_engine.py
consolidate_i_syn_files.py
consolidate_tracked_spine_data.py
fit_parameter_exponential_distribution.py
function_lib.py
optimize_AMPA_KIN.py
optimize_dendritic_excitability_020416.py
optimize_GABA_A_KIN.py
optimize_NMDA_KIN2.py
parallel_branch_cooperativity.sh
parallel_branch_cooperativity_no_nmda.sh
parallel_clustered_branch_cooperativity_nmda_controller_110315.py
parallel_clustered_branch_cooperativity_nmda_engine_110315.py
parallel_EPSP_attenuation_controller.py
parallel_EPSP_attenuation_engine.py
parallel_EPSP_i_attenuation_controller.py
parallel_EPSP_i_attenuation_engine.py
parallel_expected_EPSP_controller.py
parallel_expected_EPSP_engine.py
parallel_optimize_branch_cooperativity.sh
parallel_optimize_branch_cooperativity_nmda_kin3_controller.py
parallel_optimize_branch_cooperativity_nmda_kin3_engine.py
parallel_optimize_EPSP_amp_controller.py
parallel_optimize_EPSP_amp_engine.py
parallel_optimize_pr.sh
parallel_optimize_pr_controller_020116.py
parallel_optimize_pr_engine_020116.py
parallel_rinp_controller.py
parallel_rinp_engine.py
parallel_spine_attenuation_ratio_controller.py
parallel_spine_attenuation_ratio_engine.py
plot_channel_distributions.py
plot_NMDAR_kinetics.py
plot_results.py
plot_spine_traces.py
plot_synaptic_conductance_facilitation.py
process_i_syn_files.py
record_bAP_attenuation.py
simulate_place_cell_no_precession.py
simulate_place_cell_single_compartment.py
simulate_place_cell_single_compartment_no_nmda.py
simulate_place_cell_subtr_inh.py
simulate_place_cell_subtr_inh_add_noise.py
simulate_place_cell_subtr_inh_add_noise_no_na.py
simulate_place_cell_subtr_inh_no_na.py
simulate_place_cell_subtr_inh_no_nmda_no_na.py
simulate_place_cell_subtr_inh_r_inp.py
simulate_place_cell_subtr_inh_rec_i_syn.py
simulate_place_cell_subtr_inh_shifted.py
simulate_place_cell_subtr_inh_silent.py
simulate_place_cell_subtr_inh_vclamp.py
specify_cells.py
                            
#!/bin/bash
#cd $HOME/PycharmProjects/NEURON/
cd $HOME/CA1Sim
qsub -N job2_061716_e3200_i600_subtr30_shifted_inh0_900 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_shifted.py 30 3200 600 0 2.5 900'
qsub -N job2_061716_e3200_i600_subtr30_shifted_inh0_901 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_shifted.py 30 3200 600 0 2.5 901'
qsub -N job2_061716_e3200_i600_subtr30_shifted_inh0_902 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_shifted.py 30 3200 600 0 2.5 902'
qsub -N job2_061716_e3200_i600_subtr30_shifted_inh0_903 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_shifted.py 30 3200 600 0 2.5 903'
qsub -N job2_061716_e3200_i600_subtr30_shifted_inh0_904 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_shifted.py 30 3200 600 0 2.5 904'
qsub -N job2_061716_e3200_i600_subtr30_shifted_inh0_905 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_shifted.py 30 3200 600 0 2.5 905'
qsub -N job2_061716_e3200_i600_subtr30_shifted_inh0_906 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_shifted.py 30 3200 600 0 2.5 906'
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qsub -N job2_061716_e3200_i600_subtr30_shifted_inh0_908 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_shifted.py 30 3200 600 0 2.5 908'
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qsub -N job2_061716_e3200_i600_subtr30_shifted_inh3_920 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_shifted.py 30 3200 600 3 2.5 920'
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qsub -N job2_061716_e3200_i600_subtr30_shifted_inh3_925 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_shifted.py 30 3200 600 3 2.5 925'
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qsub -N job2_061716_e3200_i600_subtr31_shifted_inh0_935 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_shifted.py 31 3200 600 0 2.5 935'
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qsub -N job2_061716_e3200_i600_subtr31_shifted_inh3_951 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_shifted.py 31 3200 600 3 2.5 951'
qsub -N job2_061716_e3200_i600_subtr31_shifted_inh3_952 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_shifted.py 31 3200 600 3 2.5 952'
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qsub -N job2_061716_e3200_i600_subtr34_shifted_inh0_1024 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_shifted.py 34 3200 600 0 2.5 1024'
qsub -N job2_061716_e3200_i600_subtr34_shifted_inh0_1025 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_shifted.py 34 3200 600 0 2.5 1025'
qsub -N job2_061716_e3200_i600_subtr34_shifted_inh0_1026 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_shifted.py 34 3200 600 0 2.5 1026'
qsub -N job2_061716_e3200_i600_subtr34_shifted_inh0_1027 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_shifted.py 34 3200 600 0 2.5 1027'
qsub -N job2_061716_e3200_i600_subtr34_shifted_inh0_1028 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_shifted.py 34 3200 600 0 2.5 1028'
qsub -N job2_061716_e3200_i600_subtr34_shifted_inh0_1029 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_shifted.py 34 3200 600 0 2.5 1029'
qsub -N job2_061716_e3200_i600_subtr34_shifted_inh3_1040 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_shifted.py 34 3200 600 3 2.5 1040'
qsub -N job2_061716_e3200_i600_subtr34_shifted_inh3_1041 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_shifted.py 34 3200 600 3 2.5 1041'
qsub -N job2_061716_e3200_i600_subtr34_shifted_inh3_1042 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_shifted.py 34 3200 600 3 2.5 1042'
qsub -N job2_061716_e3200_i600_subtr34_shifted_inh3_1043 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_shifted.py 34 3200 600 3 2.5 1043'
qsub -N job2_061716_e3200_i600_subtr34_shifted_inh3_1044 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_shifted.py 34 3200 600 3 2.5 1044'
qsub -N job2_061716_e3200_i600_subtr34_shifted_inh3_1045 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_shifted.py 34 3200 600 3 2.5 1045'
qsub -N job2_061716_e3200_i600_subtr34_shifted_inh3_1046 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_shifted.py 34 3200 600 3 2.5 1046'
qsub -N job2_061716_e3200_i600_subtr34_shifted_inh3_1047 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_shifted.py 34 3200 600 3 2.5 1047'
qsub -N job2_061716_e3200_i600_subtr34_shifted_inh3_1048 -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_shifted.py 34 3200 600 3 2.5 1048'
qsub -N job2_061716_e3200_i600_subtr34_shifted_inh3_1049 -m e -M milsteina@janelia.hhmi.org -l d_rt=36000 -b y -cwd -V 'python simulate_place_cell_subtr_inh_shifted.py 34 3200 600 3 2.5 1049'

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