Biophysically realistic neuron models for simulation of cortical stimulation (Aberra et al. 2018)

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Accession:241165
This archive instantiates the single-cell cortical models used in (Aberra et al. 2018) and sets up extracellular stimulation with either a point-current source, to simulate intracortical microstimulation (ICMS), or a uniform E-field distribution, with a monophasic, rectangular pulse waveform in both cases.
Reference:
1 . Aberra AS, Peterchev AV, Grill WM (2018) Biophysically realistic neuron models for simulation of cortical stimulation. J Neural Eng 15:066023 [PubMed]
Model Information (Click on a link to find other models with that property)
Model Type: Neuron or other electrically excitable cell; Axon;
Brain Region(s)/Organism: Neocortex; Barrel cortex;
Cell Type(s): Myelinated neuron;
Channel(s):
Gap Junctions:
Receptor(s):
Gene(s):
Transmitter(s):
Simulation Environment: NEURON;
Model Concept(s): Action Potential Initiation; Detailed Neuronal Models;
Implementer(s): Aberra, Aman [aman.aberra at duke.edu];
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AberraEtAl2018
cells
L5_TTPC2_cADpyr232_3
hoc_recordings
mechanisms
morphology
python_recordings
synapses
README *
.provenance.json
biophysics.hoc *
cellinfo.json
CHANGELOG *
constants.hoc *
creategui.hoc *
createsimulation.hoc
current_amps.dat
init.hoc *
LICENSE *
morphology.hoc
mosinit.hoc *
ringplot.hoc *
run.py
run_hoc.sh *
run_py.sh *
run_RmpRiTau.py
run_RmpRiTau_py.sh *
template.hoc
VERSION *
                            
The CC-BY-NC-SA license applies, as indicated by headers in the
respective source files.

https://creativecommons.org/licenses/by-nc-sa/4.0/

The detailed text is available here
https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode

or in this tarball in the seperate file LICENSE_CC-BY-CA-SA-4.0


The HOC code, Python code, synapse MOD code and cell morphology are licensed with the above mentioned CC-BY-NC-SA license.


For models for which the original source is available on ModelDB, any
specific licenses on mentioned on ModelDB, or the generic License of ModelDB 
apply:

1) Ih model
Author: Stefan Hallermann
Original URL: http://senselab.med.yale.edu/ModelDB/ShowModel.cshtml?model=144526&file=\HallermannEtAl2012\h.mod

2) StochKv model
Authors: Zach Mainen Adaptations: Kamran Diba, Mickey London, Peter N. Steinmetz, Werner Van Geit
Original URL: http://senselab.med.yale.edu/ModelDB/ShowModel.cshtml?model=125385&file=\Sbpap_code\mod\skm.mod

3) D-type K current model
Authors: Yuguo Yu
Original URL: https://senselab.med.yale.edu/ModelDB/ShowModel.cshtml?model=135898&file=\YuEtAlPNAS2007\kd.mod

4) Internal calcium concentration model
Author: Alain Destexhe
Original URL: http://senselab.med.yale.edu/ModelDB/ShowModel.cshtml?model=3670&file=\NTW_NEW\capump.mod

5) Ca_LVAst, Im, K_Tst, NaTa_t, SK_E2, Ca_HVA, Ih, K_Pst, Nap_Et2, NaTs2_t, SKv3_1            
Author: Etay Hay, Shaul Druckmann, Srikanth Ramaswamy, James King, Werner Van Geit
Original URL: https://senselab.med.yale.edu/ModelDB/ShowModel.cshtml?model=139653&file=\L5bPCmodelsEH\mod\

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