Parallel network simulations with NEURON (Migliore et al 2006)

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Accession:64229
The NEURON simulation environment has been extended to support parallel network simulations. The performance of three published network models with very different spike patterns exhibits superlinear speedup on Beowulf clusters.
Reference:
1 . Migliore M, Cannia C, Lytton WW, Markram H, Hines ML (2006) Parallel network simulations with NEURON. J Comput Neurosci 21:119-29 [PubMed]
Model Information (Click on a link to find other models with that property)
Model Type: Realistic Network;
Brain Region(s)/Organism:
Cell Type(s):
Channel(s):
Gap Junctions:
Receptor(s):
Gene(s):
Transmitter(s):
Simulation Environment: NEURON;
Model Concept(s): Methods;
Implementer(s): Hines, Michael [Michael.Hines at Yale.edu];
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netmod
parbush
data
AMPA.mod *
arhRT03.mod *
cadecay.mod
cadRT03.mod
cah.mod
calRT03.mod
catRT03.mod *
GABAa.mod *
GABAb.mod *
intf.mod
k2RT03.mod *
kahpRT03.mod
kaRT03.mod *
kca.mod *
kcRT03.mod
kdr.mod
kdrp.mod
kdrRT03.mod *
kmRT03.mod *
misc.mod
na.mod
nafRT03.mod *
nap.mod
napRT03.mod *
NMDA.mod *
nstim.mod
vecst.mod
batch_.hoc
bg_cvode.inc
boltz_cvode.inc
geneval_cvode.inc
modstat
netcon.inc
test1.sh
xtmp
                            
Bush PC, Prince DA, Miller KD (1999) Increased pyramidal excitability
and NMDA conductance can explain posttraumatic epileptogenesis without disinhibition
 a model. J Neurophysiol 82:1748-58

http://senselab.med.yale.edu/senselab/modeldb/ShowModel.asp?model=52034

500 cells
  100 Pyramidal, 9 compartments, 5 mechanisms
  300 Pyramidal2, 8 compartments, 6 mechanisms
  100 Basket, 7 compartments, 3 mechanisms
  22165 States

41380 NetCon into 7100 Synapses
(1500 Net2Syn, 1700 AMPA, 1500 GABAa, 1200 GABAb, 1200 NMDA)

500 ms, 3493 spikes generated, 275,386 spikes delivered

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