Abbott LF, Nelson SB (2000) Synaptic plasticity: taming the beast. Nat Neurosci 3 Suppl:1178-83 [PubMed] Arnold L (1974) Stochastic Differential Equations: Theory And Applications Bhalla US, Iyengar R (1999) Emergent properties of networks of biological signaling pathways. Science 283:381-7 [PubMed] Brette R, Gerstner W (2005) Adaptive exponential integrate-and-fire model as an effective description of neuronal activity. J Neurophysiol 94:3637-42 [Journal] [PubMed] Brown R (1988) Calendar queues: A fast 0(1) priority queue implementation for the simulation event set problem J Commun ACM 31:1220-1227 Carnevale NT, Hines ML (2006) The NEURON Book Carriero N, Gelernter D (1989) Linda in context Communications of the ACM, April 1989 Claverol E, Brown A, Chad J (2002) Discrete simulation of large aggregates of neurons Neurocomputing 47:277-297 De Schutter E, Bower JM (1994) An active membrane model of the cerebellar Purkinje cell. I. Simulation of current clamps in slice. J Neurophysiol 71:375-400 [Journal] [PubMed] Destexhe A, Mainen ZF, Sejnowski TJ (1994) Synthesis of models for excitable membranes, synaptic transmission and neuromodulation using a common kinetic formalism. J Comput Neurosci 1:195-230 [Journal] [PubMed] Destexhe A, Sejnowski TJ (2001) Thalamocortical Assemblies-How Ion Channels, Single Neurons and large-Scale Networks Organize Sleep Diesmann M, Gewaltig MO (2002) NEST: An environment for neural systemssimulations Forschung und wisschenschaftliches Rechnen, Plesser T:Macho V, ed. pp.43 Djurfeldt M, Johansson C, Ekeberg O, Rehn M, Lundqvist M, Lansner A (2005) Massively parallel simulationof brain-scale neuronal network models Technical Report TRITA-NA-P0513, School of Computer Science and Communication, Stockholm Drewes R (2005) Modeling the brain with NCS and Brainlab LINUX Journal online (http:--www.linuxjournal.com-article-8038) Drewes R, Maciokas JB, Louis SJ, Goodman PH (2004) An evolutionary autonomous agent with visual cortex and recurrent spiking columnar neural network Lecture Notes In Computer Science 3102:257-258 Ermentrout GB (2002) Simulating, Analyzing, and Animating Dynamical System: A Guide to XPPAUT for Researchers and Students Society for Industrial and Applied Mathematics (SIAM) Ermentrout GB, Kopell N (1986) Parabolic bursting in an excitable system coupled with a slow oscillation. Siam J Appl Math 46:233-253 Gerstner W, Kistler WM (2002) Mathematical formulations of Hebbian learning. Biol Cybern 87:404-15 [PubMed] Giugliano M (2000) Synthesis of generalized algorithms for the fast computation of synaptic conductances with Markov kinetic models in large network simulations. Neural Comput 12:903-31 [PubMed] Gupta A, Wang Y, Markram H (2000) Organizing principles for a diversity of GABAergic interneurons and synapses in the neocortex. Science 287:273-8 [PubMed] Gutig R, Aharonov R, Rotter S, Sompolinsky H (2003) Learning input correlations through nonlinear temporally asymmetric Hebbian plasticity. J Neurosci 23:3697-714 [PubMed] Gutig R, Sompolinsky H (2006) The tempotron: a neuron that learns spike timing-based decisions. Nat Neurosci 9:420-8 [PubMed] Hammarlund P, Ekeberg O (1998) Large neural network simulations on multiple hardware platforms. J Comput Neurosci 5:443-59 [Journal] [PubMed] Hansel D, Mato G, Meunier C, Neltner L (1998) On numerical simulations of integrate-and-fire neural networks. Neural Comput 10:467-83 [PubMed] Hines ML, Carnevale NT (1997) The NEURON simulation environment. Neural Comput 9:1179-209 [PubMed] Hines ML, Carnevale NT (2001) NEURON: a tool for neuroscientists. Neuroscientist 7:123-35 [Journal] [PubMed] Houweling AR, Bazhenov M, Timofeev I, Steriade M, Sejnowski TJ (2005) Homeostatic synaptic plasticity can explain post-traumatic epileptogenesis in chronically isolated neocortex. Cereb Cortex 15:834-45 [PubMed] Kanold PO, Manis PB (2005) Encoding the timing of inhibitory inputs. J Neurophysiol 93:2887-97 [Journal] [PubMed] Kohn J, Worgotter F (1998) Employing the zeta-transform to optimize the calculation of the synaptic conductance of NMDA and other synaptic channels in network simulations. Neural Comput 10:1639-51 [PubMed] Lee G, Farhat NH (2006) The double queue method: a numerical method for integrate-and-fire neuron networks. Neural Netw 14:921-32 [PubMed] Lytton WW (1996) Optimizing synaptic conductance calculation for network simulations. Neural Comput 8:501-9 [PubMed] Lytton WW, Hines ML (2005) Independent variable time-step integration of individual neurons for network simulations. Neural Comput 17:903-21 [Journal] [PubMed] Markram H, Lubke J, Frotscher M, Roth A, Sakmann B (1997) Physiology and anatomy of synaptic connections between thick tufted pyramidal neurones in the developing rat neocortex. J Physiol 500 ( Pt 2):409-40 [PubMed] Markram H, Lubke J, Frotscher M, Sakmann B (1997) Regulation of synaptic efficacy by coincidence of postsynaptic APs and EPSPs. Science 275:213-5 [PubMed] Markram H, Pikus D, Gupta A, Tsodyks M (2003) Potential for multiple mechanisms, phenomena and algorithms for synaptic plasticity at single synapses. Neuropharmacology 37:489-500 [PubMed] Markram H, Wang Y, Tsodyks M (1998) Differential signaling via the same axon of neocortical pyramidal neurons. Proc Natl Acad Sci U S A 95:5323-8 [PubMed] Mattia M, Del Giudice P (2000) Efficient event-driven simulation of large networks of spiking neurons and dynamical synapses. Neural Comput 12:2305-29 [PubMed] Moffitt MA, McIntyre CC (2005) Model-based analysis of cortical recording with silicon microelectrodes. Clin Neurophysiol 116:2240-50 [PubMed] Morrison A, Mehring C, Geisel T, Aertsen AD, Diesmann M (2005) Advancing the boundaries of high-connectivity network simulation with distributed computing. Neural Comput 17:1776-801 [PubMed] Nenadic Z, Ghosh BJ, Ulinski P (2003) Propagating Waves in Visual Cortex: A Large-Scale Model of Turtle Visual Cortex Journal of Computational Neuroscience 14:161-184 [Journal] [PubMed] Prescott SA, De Koninck Y (2005) Integration time in a subset of spinal lamina I neurons is lengthened by sodium and calcium currents acting synergistically to prolong subthreshold depolarization. J Neurosci 25:4743-54 [Journal] [PubMed] Reutimann J, Giugliano M, Fusi S (2003) Event-driven simulation of spiking neurons with stochastic dynamics. Neural Comput 15:811-30 [PubMed] Rochel O, Martinez D (2003) An event-driven framework for the simulation of networks of spiking neurons Proc. 11th European Symposium on Artificial Neural Networks :295-300 Rotter S, Diesmann M (1999) Exact digital simulation of time-invariant linear systems with applications to neuronal modeling. Biol Cybern 81:381-402 [PubMed] Rudolph M, Destexhe A (2006) Analytical Integrate-and-Fire Neuron Models with Conductance-Based Dynamics for Event-Driven Simulation Strategies. Neural Comput 18:2146-210 [PubMed] Saghatelyan A,Roux P,Migliore M,Rochefort C,Desmaisons D,Charneau P,Shepherd GM, Lledo PM (2005) Activity-dependent adjustments of the inhibitory network in the olfactory bulb following early postnatal deprivation. Neuron 46:103-116 [Journal] [PubMed] Shelley MJ, Tao L (2001) Efficient and accurate time-stepping schemes for integrate-and-fire neuronal networks. J Comput Neurosci 11:111-9 [Journal] [PubMed] Sleator D, Tarjan R (1983) Self adjusting binary trees Proc ACM SIGACT Symposium on Theory of Computing :235-245 Song S, Miller KD, Abbott LF (2000) Competitive Hebbian learning through spike-timing-dependent synaptic plasticity. Nat Neurosci 3:919-26 [PubMed] Traub RD, Contreras D, Cunningham MO, Murray H, Lebeau FE, Roopun A, Bibbig A, et al (2005) A single-column thalamocortical network model exhibiting gamma oscillations, sleep spindles and epileptogenic bursts J Neurophysiol 93(4):2194-232 [Journal] [PubMed] Tsodyks M, Pawelzik K, Markram H (1998) Neural networks with dynamic synapses Neural Comput 10(4):821-35 [Journal] [PubMed] Vitko I, Chen Y,Arias JM, Shen Y, Wu XR, Perez-Reyes E (2005) Functional Characterization and Neuronal Modeling of the Effects of Childhood Absence Epilepsy Variants of CACNA1H, a T-Type Calcium Channel
J Neurosci 25:4844-4855 [Journal] [PubMed] Vogels TP, Abbott LF (2005) Signal propagation and logic gating in networks of integrate-and-fire neurons. J Neurosci 25(46):10786-95 [Journal] [PubMed] Wang Y, Markram H, Goodman PH, Berger TK, Ma J, Goldman-Rakic PS (2006) Heterogeneity in the pyramidal network of the medial prefrontal cortex. Nat Neurosci 9:534-42 [PubMed] Watts L (1994) Event-driven simulation of networks of spiking neurons Advances in Neural Information Processing Systems, Cowan J:Tesauro G:Alspector J, ed. pp.927 Wiebers JL, Goodman PH, Markram H (2000) Blockade of A-type potassium channels recovers memory impairment caused by synaptic loss: Implications for Alzheimers dementia J Investig Med 48:283S Wilson MA, Bower JM (1989) The simulation of large-scale neuronal networks Methods In Neuronal Modeling: From Synapses To Networks, Koch C:Segev I, ed. pp.291 Wolf JA, Moyer JT, Lazarewicz MT, Contreras D, Benoit-Marand M, O'Donnell P, Finkel LH (2005) NMDA-AMPA ratio impacts state transitions and entrainment to oscillations in a computational model of the nucleus accumbens medium spiny projection neuron. J Neurosci 25:9080-95 [Journal] [PubMed] Zeigler B, Praehofer H, Kim T (2000) Theory of Modeling and Simulation Integrating Discrete Event and Continuous Complex Dynamic Systems (2nd ed) Zeigler BP, Vahie S (1993) DEVS formalism and methodology: unity of conception-diversity of application Proceedings of the 1993 Winter Simulation Conference :573-579 | | Aisa B, Mingus B, O`Reilly R (2008) The Emergent neural modeling system. Neural Netw [Journal] [PubMed] Bedard C, Destexhe A (2008) A modified cable formalism for modeling neuronal membranes at high frequencies. Biophys J 94:1133-43 [Journal] [PubMed] Brette R, Goodman DF (2011) Vectorized Algorithms for Spiking Neural Network Simulation. Neural Comput [Journal] [PubMed] Carnevale NT, Morse TM (1996-2009) Research reports that have used NEURON Web published citations at the NEURON website [Journal] Gleeson P, Crook S, Cannon RC, Hines ML, Billings GO, Farinella M, Morse TM, Davison AP, Ray (2010) NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail. PLoS Comput Biol 6:e1000815 [Journal] [PubMed] Huang CW, Tsai JJ, Huang CC, Wu SN (2009) Experimental and simulation studies on the mechanisms of levetiracetam-mediated inhibition of delayed-rectifier potassium current (Kv3.1): contribution to the firing of action
potentials J Physiol Pharmacol 60(4):37-47 [Journal] [PubMed] Huang CW, Cheng JT, Tsai JJ, Wu SN, Huang CC (2009) Diabetic Hyperglycemia Aggravates Seizures and Status Epilepticus-induced Hippocampal Damage. Neurotox Res 15:71-81 [Journal] [PubMed] Huang CW, Huang CC, Lin MW, Tsai JJ, Wu SN (2008) The synergistic inhibitory actions of oxcarbazepine on voltage-gated sodium and potassium currents in differentiated NG108-15 neuronal cells and model neurons. Int J Neuropsychopharmacol 11:597-610 [Journal] [PubMed] Kobayashi R, Tsubo Y, Shinomoto S (2009) Made-to-order spiking neuron model equipped with a multi-timescale adaptive threshold. Front Comput Neurosci 3:9 [Journal] [PubMed] Kozloski J, Wagner J (2011) An Ultrascalable Solution to Large-scale Neural Tissue Simulation. Front Neuroinform 5:15 [Journal] [PubMed] Lytton WW, Seidenstein AH, Dura-Bernal S, McDougal RA, Schurmann F, Hines ML (2016) Simulation Neurotechnologies for Advancing Brain Research: Parallelizing Large Networks in NEURON. Neural Comput :1-28 [Journal] [PubMed] McDougal RA, Bulanova AS, Lytton WW (2016) Reproducibility in computational neuroscience models and simulations IEEE Trans Biomed Eng 63(10):2021-2035 [Journal] [PubMed] Podlaski WF, Seeholzer A, Groschner LN, MiesenbĂ¶ck G, Ranjan R, Vogels TP (2017) Mapping the function of neuronal ion channels in model and experiment. Elife [Journal] [PubMed] Richert M, Nageswaran JM, Dutt N, Krichmar JL (2011) An efficient simulation environment for modeling large-scale cortical processing. Front Neuroinform 5:19 [Journal] [PubMed] Sterratt D, Graham B, Gillies A, Willshaw D (2011) Principles of Computational Modelling in Neuroscience, Cambridge University Press :1-401 [Journal] Stewart RD, Bair W (2009) Spiking neural network simulation: numerical integration with the Parker-Sochacki method. J Comput Neurosci [Journal] [PubMed] van Elburg RA, van Ooyen A (2009) Generalization of the Event-Based Carnevale-Hines Integration Scheme for Integrate-and-Fire Models. Neural Comput 21:1913-1930 [Journal] [PubMed] Versace M, Ames H, Leveille J, Fortenberry B, Gorchetchnikov A (2008) Kinness: a modular framework for computational neuroscience. Neuroinformatics 6(4):291-309 [Journal] [PubMed] |