NEURON interfaces to MySQL and the SPUD feature extraction algorithm (Neymotin et al. 2008)

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Accession:97868
See the readme.txt for information on setting up this interface to a MySQL server from the NEURON simulator. Note the SPUD feature extraction algorithm includes its own readme in the spud directory.
Reference:
1 . Neymotin S, Uhlrich DJ, Manning KA, Lytton WW (2008) Data mining of time-domain features from neural extracellular field data Applic. of Comput. Intel. in Bioinf. and Biomed.: Current Trends and Open Problems 151:119-140
Model Information (Click on a link to find other models with that property)
Model Type:
Brain Region(s)/Organism:
Cell Type(s):
Channel(s):
Gap Junctions:
Receptor(s):
Gene(s):
Transmitter(s):
Simulation Environment: NEURON;
Model Concept(s): Methods;
Implementer(s): Lytton, William [billl at neurosim.downstate.edu]; Neymotin, Sam [samn at neurosim.downstate.edu];
Files displayed below are from the implementation
// $Id: mosinit.hoc,v 1.7 2008/10/06 16:35:59 samn Exp $ 

load_file("nrngui.hoc")
load_file("setup.hoc")

objref vb
vb=new VBox()
vb.intercept(1)

load_file("grvec.hoc")
load_file("nqs.hoc")
load_file("mysql_utils.hoc")
load_file("drline.hoc")
load_file("spud.hoc")

xpanel("Fig from Data mining of time-domain features from neural extracellular field data")

xlabel("Click draw SPUD sample fig to see figure 2 from ")
xlabel("Data mining of time-domain features from neural extracellular field data")
xlabel(" ")


xlabel("See the readme.txt file for details on the interface which allows access")
xlabel("to a MySQL server from the NEURON simulation environment (involves ")
xlabel("compiling and linking a library).")
xlabel(" ")

xbutton("draw SPUD sample fig","genspudfig()")
xbutton("exit","quit()")

xpanel()

vb.intercept(0)
vb.map()

Neymotin S, Uhlrich DJ, Manning KA, Lytton WW (2008) Data mining of time-domain features from neural extracellular field data Applic. of Comput. Intel. in Bioinf. and Biomed.: Current Trends and Open Problems 151:119-140

References and models cited by this paper

References and models that cite this paper

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   Neural Query System NQS Data-Mining From Within the NEURON Simulator (Lytton 2006) [Model]

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   Tonic-clonic transitions in a seizure simulation (Lytton and Omurtag 2007) [Model]

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Neymotin SA, Hilscher MM, Moulin TC, Skolnick Y, Lazarewicz MT, Lytton WW (2013) Ih Tunes Theta/Gamma Oscillations and Cross-Frequency Coupling In an In Silico CA3 Model PLoS ONE 8(10):e76285 [Journal] [PubMed]

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Neymotin SA, Lee H, Park E, Fenton AA, Lytton WW (2011) Emergence of physiological oscillation frequencies in a computer model of neocortex. Front Comput Neurosci 5:19-75 [Journal] [PubMed]

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