Cell splitting in neural networks extends strong scaling (Hines et al. 2008)

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Accession:97917
Neuron tree topology equations can be split into two subtrees and solved on different processors with no change in accuracy, stability, or computational effort; communication costs involve only sending and receiving two double precision values by each subtree at each time step. Application of the cell splitting method to two published network models exhibits good runtime scaling on twice as many processors as could be effectively used with whole-cell balancing.
Reference:
1 . Hines ML, Eichner H, Schürmann F (2008) Neuron splitting in compute-bound parallel network simulations enables runtime scaling with twice as many processors. J Comput Neurosci 25:203-10 [PubMed]
Model Information (Click on a link to find other models with that property)
Model Type: Realistic Network;
Brain Region(s)/Organism: Generic;
Cell Type(s):
Channel(s):
Gap Junctions:
Receptor(s):
Gene(s):
Transmitter(s):
Simulation Environment: NEURON;
Model Concept(s): Methods;
Implementer(s): Hines, Michael [Michael.Hines at Yale.edu];
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splitcell
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96.7	173
96.8	406
96.9	38
96.9	511
97	21
97	149
97.1	12
97.2	15
97.2	164
97.3	127
97.5	18
97.5	193
97.5	224
97.6	452
97.8	170
97.8	492
97.9	177
97.9	422
98	19
98	436
98.1	182
98.2	102
98.2	505
98.5	453
98.6	393
98.7	218
98.7	432
98.7	501
98.8	199
98.8	219
98.9	496
99	172
99	206
99	491
99.1	478
99.2	403
99.2	486
99.2	524
99.3	139
99.4	229
99.4	441
99.4	459
99.5	145
99.5	148
99.5	178
99.5	430
99.5	504
99.6	409
99.6	483
99.7	188
99.8	502
99.9	10
100.1	159
100.1	446
100.1	503
100.2	153
100.2	495
100.4	475
100.4	482
100.6	216
100.6	481
100.7	200
100.7	473
100.8	210
100.8	384
100.9	500
101	17
101	181
101.1	215
101.2	463
101.3	134
101.3	194
101.3	223
101.3	420
101.3	525
101.7	166
101.7	410
101.8	156
101.8	454
101.9	160
101.9	383
102.1	230
102.1	521
102.2	523
102.3	187
102.3	469
102.3	488
102.4	137
102.5	128
102.5	198
102.6	191
102.6	505
102.7	450
102.9	419
103	141
103	176
103	437
103.2	424
103.2	425
103.2	501
103.3	464
103.5	197
103.6	201
103.6	227
103.8	3
103.8	248
104	162
104	439
104	470
104.1	472
104.2	179
104.2	386
104.4	203
104.6	4
104.6	146
104.7	158
104.8	183
104.8	497
104.9	167
104.9	221
104.9	449
104.9	502
104.9	522
105	510
105.3	387
105.3	388
105.5	237
105.6	107
105.6	503
105.6	520
105.7	391
105.7	408
105.7	429
105.7	447
105.8	165
105.9	466
105.9	480
105.9	504
106.1	476
106.1	477
106.1	498
106.1	500
106.3	243
106.5	222
106.5	242
106.5	418
106.5	427
106.6	195
106.6	485
106.7	208
106.7	413
106.7	428
106.8	192
107	431
107.1	169
107.2	138
107.7	204
107.8	226
107.8	467
107.9	168
107.9	392
108	505
108.1	142
108.2	214
108.2	501
108.3	233
108.3	381
108.4	143
108.4	171
108.5	364
108.5	457
108.6	189
108.6	196
108.7	184
108.7	461
108.8	155
108.9	163
108.9	385
108.9	401
109	11
109	444
109.2	417
109.2	440
109.2	442
109.3	186
109.4	249
109.6	190
109.6	396
109.7	507
109.8	213
109.8	423
109.8	458
109.9	487
110.2	2
110.2	397
110.3	376
110.3	445
110.4	462
110.5	399
110.5	435
110.6	193
110.7	441
110.7	484
110.7	502
110.8	252
110.8	253
110.8	402
110.8	503
110.9	212
111.1	225
111.3	209
111.3	256
111.3	504
111.5	177
111.5	426
111.5	500
111.6	490
111.7	170
111.8	147
111.8	443
111.9	479
111.9	524
112.1	206
112.3	182
112.3	414
112.5	152
112.5	174
112.5	433
112.6	228
112.9	199
112.9	432
113	494
113	505
113.3	198
113.3	453
113.4	403
113.4	446
113.5	421
113.5	436
113.6	132
113.6	452
113.7	185
113.7	202
113.8	411
113.9	501
114	263
114	406
114	525
114.1	416
114.2	200
114.2	456
114.3	164
114.4	211
114.4	390
114.5	229
114.5	526
114.6	187
114.7	159
114.8	220
114.9	219
114.9	448
115	181
115	455
115	473
115	521
115.3	178
115.4	420
115.5	205
115.5	210
115.6	518
115.7	465
115.8	216
115.8	398
115.8	502
116	409
116.1	438
116.1	504
116.2	232
116.3	180
116.5	503
116.6	257
116.6	460
116.6	470
116.7	201
116.7	224
116.7	410
116.8	157
116.9	471
117	449
117.1	434
117.3	176
117.4	419
117.5	194
117.5	371
117.7	153
117.7	395
117.9	427
117.9	500
117.9	506
118	161
118	241
118	437
118	439
118.1	384
118.1	451
118.1	489
118.2	172
118.2	195
118.2	234
118.3	382
118.4	469
118.5	450
118.6	463
118.7	207
118.8	215
118.8	412
118.9	133
118.9	254
119	265
119	505
119.2	191
119.2	247
119.2	389
119.5	244
119.5	430
119.7	197
119.7	230
119.7	519
119.9	221
119.9	501
120	231
120.1	401
120.2	383
120.3	223
120.3	425
120.6	474
120.7	217
120.7	408
120.7	504
120.8	227
120.8	447
121	481
121.1	400
121.1	502
121.2	459
121.2	477
121.2	523
121.3	393
121.3	522
121.4	248
121.4	503
121.5	193
121.7	429
121.7	464
121.8	368
122	162
122.1	415
122.1	424
122.2	203
122.2	466
122.3	144
122.3	218
122.3	236
122.3	237
122.4	385
122.5	140
122.5	391
122.6	169
122.6	386
122.7	423
122.7	444
122.9	422
123	165
123	214
123.1	188
123.2	243
123.2	404
123.2	413
123.2	478
123.3	251
123.4	226
123.4	428
123.5	369
123.8	242
123.8	387
123.8	524
123.9	233
124	212
124	222
124	418
124	441
124	500
124.1	245
124.4	505
124.5	273
124.5	446
124.8	240
124.8	272
124.8	388
124.8	435
124.8	486
125	381
125	399
125.1	192
125.1	501
125.2	204
125.2	261
125.6	196
125.6	377
125.6	504
126	246
126	503
126.1	183
126.1	225
126.2	166
126.2	442
126.3	208
126.4	362
126.4	364
126.4	403
126.4	432
126.5	378
126.5	405
126.5	417
126.6	374
126.6	402
126.8	213
126.8	375
126.8	502
126.9	160
126.9	228
126.9	431
127	370
127.2	440
127.4	186
127.4	360
127.7	189
127.7	198
127.8	525
127.9	406
127.9	492
128	200
128.1	443
128.4	171
128.4	352
128.4	436
128.5	253
128.6	206
128.6	361
128.6	487
128.7	187
128.7	199
128.7	249
128.7	353
128.7	380
128.7	420
129.1	258
129.2	238
129.2	414
129.2	521
129.4	220
129.4	505
129.5	267
129.6	201
129.6	421
129.7	216
129.7	426
129.7	437
129.8	256
129.8	260
129.8	433
130.1	263
130.2	232
130.2	384
130.2	504
130.3	450
130.4	397
130.4	427
130.5	229
130.5	350
130.6	255
130.6	445
130.6	514
130.7	409
130.8	503
130.9	170
130.9	177
130.9	410
131.1	195
131.2	390
131.3	259
131.3	416
131.5	181
131.6	500
131.7	372
131.9	182
131.9	210
131.9	376
131.9	411
131.9	501
131.9	502
132	456
132.1	178
132.3	355
132.4	526
132.5	191
132.6	241
132.6	363
132.7	235
132.7	483
132.8	176
132.9	365
132.9	366
133	401
133	449
133.1	395
133.2	452
133.5	392
133.7	252
133.7	275
133.7	371
134	455
134.1	257
134.1	512
134.3	396
134.4	269
134.4	453
134.5	193
134.5	391
134.7	344
134.8	219
134.8	439
134.9	224
134.9	290
135	202
135	209
135	248
135	291
135	504
135	505
135.1	278
135.1	399
135.2	230
135.4	221
135.5	425
135.6	513
135.7	408
135.7	503
135.8	185
135.8	212
135.8	214
135.8	398
135.9	386
136.1	407
136.1	423
136.1	457
136.4	262
136.5	223
136.5	247
136.6	446
136.7	382
136.7	435
136.9	146
136.9	336
137	164
137	303
137.1	283
137.1	389
137.1	523
137.1	524
137.3	419
137.4	237
137.4	383
137.5	385
137.6	163
137.8	343
137.8	394
138	280
138	402
138	502
138.1	509
138.2	279
138.3	387
138.4	243
138.4	413
138.5	244
138.5	348
138.6	297
138.8	359
138.8	373
138.9	501
139.1	388
139.2	222
139.2	381
139.2	403
139.3	215
139.3	254
139.4	233
139.4	356
139.5	282
139.5	298
139.6	251
139.7	231
139.7	438
139.8	194
139.8	197
139.8	226
139.8	461
139.8	504
139.9	354
140.1	205
140.1	345
140.2	500
140.2	503
140.5	368
140.8	421
140.8	505
140.8	525
140.9	227
140.9	412
140.9	454
141.1	265
141.1	270
141.2	322
141.4	375
141.5	400
141.6	266
141.6	272
141.9	273
141.9	274
141.9	304
141.9	418
142	301
142.1	330
142.3	242
142.3	522
142.4	377
142.4	424
142.6	250
142.6	337
142.7	211
142.7	234
142.8	228
142.8	415
143	245
143	339
143.2	263
143.3	276
143.4	258
143.4	261
143.5	165
143.5	217
143.5	369
143.6	352
143.6	434
143.6	521
143.8	372
143.9	285
143.9	390
144.1	277
144.1	420
144.1	502
144.1	504
144.2	253
144.4	203
144.4	353
144.5	340
144.5	362
144.7	319
144.8	503
144.9	347
145	310
145	379
145.2	240
145.2	378
145.3	181
145.3	189
145.3	218
145.3	364
145.4	299
145.5	517
145.6	325
145.6	380
145.7	288
145.8	292
145.9	225
145.9	232
145.9	357
146	200
146	391
146	450
146.1	401
146.2	511
146.6	350
146.7	213
146.7	271
146.7	505
146.8	346
147	305
147	384
147.2	246
147.2	308
147.3	216
147.3	311
147.3	405
147.3	426
147.3	501
147.4	409
147.5	360
147.6	259
147.6	313
147.7	238
147.8	284
147.9	327
148	516
148.1	241
148.1	256
148.1	333
148.1	363
148.2	201
148.2	526
148.3	296
148.3	332
148.4	255
148.4	287
148.5	371
148.5	414
148.7	335
148.8	187
148.8	504
148.8	520
148.9	252
148.9	275
148.9	386
148.9	410
149	195
149	395
149.1	267
149.1	502
149.3	349
149.3	503
149.4	385
149.4	399
149.5	191
149.5	236
149.5	309
149.5	370
149.6	290
149.7	249
149.8	239
149.8	336
149.9	219
150	206
150.1	212
150.1	247
150.2	432
150.3	293
150.3	315
150.4	312
150.4	314
150.4	389
150.7	295
150.7	323
150.8	260
150.8	316
150.8	334
151	329
151.1	257
151.2	366
151.2	523
151.3	221
151.3	286
151.3	524
151.4	248
151.4	302
151.7	237
151.7	281
151.7	348
151.7	402
151.8	278
151.9	294
151.9	361
152	220
152	317
152	320
152.1	525
152.2	269
152.2	289
152.6	344
152.6	387
152.7	318
152.8	303
152.9	199
152.9	254
152.9	283
153	324
153	365
153	376
153.2	262
153.2	280
153.2	331
153.2	381
153.2	503
153.2	504
153.3	297
153.3	322
153.3	505
153.4	291
153.4	330
153.4	502
153.5	273
153.6	272
153.7	375
153.8	268
153.8	304
153.9	251
154	227
154	321
154	408
154.1	406
154.3	258
154.3	343
154.4	279
154.4	282
154.4	367
154.6	230
154.7	209
154.8	326
154.9	372
155	233
155	300
155	306
155	373
155.1	307
155.1	425
155.2	235
155.2	298
155.2	413
155.2	423
155.3	276
155.4	355
155.6	261
155.6	359
155.7	224
155.7	342
155.8	223
155.8	501
155.9	244
156	328
156	352
156	403
156	421
156.1	274
156.1	398
156.2	301
156.3	229
156.3	337
156.4	214
156.4	397
156.5	345
156.6	270
156.7	263
156.7	338
156.7	382
156.8	245
156.8	356
156.8	362
156.9	265
156.9	503
157	504
157.2	243
157.2	253
157.2	319
157.2	374
157.3	222
157.5	208
157.5	277
157.5	285
157.6	242
157.6	325
157.6	339
157.6	522
157.7	411
157.9	305
157.9	515
158.1	231
158.1	310
158.1	346
158.1	502
158.2	299
158.3	250
158.3	350
158.4	287
158.7	271
158.7	390
158.8	311
158.8	388
158.8	505
158.9	526
159	240
159.1	341
159.2	363
159.2	391
159.3	378
159.4	275
159.4	353
159.5	288
159.5	296
159.5	380
159.5	519
159.6	332
159.7	292
159.9	238
159.9	333
159.9	416
160	340
160	394
160.2	246
160.2	266
160.2	377
160.2	523
160.4	284
160.5	226
160.5	314
160.5	354
160.6	252
160.7	371
160.8	182
160.8	256
160.8	290
160.8	313
160.8	369
160.8	401
160.8	514
161	259
161	364
161.1	308
161.1	347
161.1	503
161.1	504
161.2	228
161.3	225
161.3	241
161.3	327
161.3	521
161.4	196
161.4	399
161.5	525
161.6	357
161.6	385
161.6	396
162.1	264
162.1	383
162.3	336
162.4	293
162.4	317
162.5	194
162.5	502
162.6	384
162.7	267
162.8	348
162.9	255
162.9	309
163	315
163	322
163.1	260
163.1	330
163.1	344
163.2	237
163.2	289
163.2	349
163.2	389
163.2	500
163.3	248
163.5	254
163.6	400
163.8	375
163.9	280
163.9	329
163.9	351
163.9	524
164	294
164	323
164.1	232
164.1	239
164.1	304
164.2	181
164.3	234
164.3	283
164.4	247
164.4	258
164.4	297
164.4	501
164.5	212
164.5	334
164.5	370
164.6	286
164.6	295
164.6	366
164.7	273
164.8	236
164.9	324
164.9	365
165	257
165	504
165.1	276
165.1	360
165.1	503
165.2	272
165.2	318
165.3	358
165.5	402
165.5	505
165.6	281
165.6	368
165.7	316
165.8	278
165.9	395
166	219
166	320
166	335
166	409
166.2	233
166.2	361
166.3	331
166.4	302
166.4	379
166.6	372
166.6	502
166.7	386
166.8	227
167	291
167	373
167	512
167.3	306
167.4	220
167.4	312
167.5	251
167.5	279
167.6	195
167.6	201
167.6	268
167.6	282
167.6	381
167.7	269
167.8	262
167.8	287
167.9	326
168.1	218
168.1	261
168.2	346
168.2	352
168.2	376
168.4	303
168.4	307
168.4	343
168.4	367
168.5	363
168.5	418
168.6	355
168.7	199
168.7	319
168.7	350
168.8	325
168.8	359
168.8	362
168.9	245
168.9	249
168.9	298
168.9	513
169	314
169	332
169	337
169	503
169.1	311
169.2	242
169.3	221
169.3	230
169.3	301
169.3	504
169.4	305
169.5	300
169.6	271
169.6	526
169.7	253
169.7	407
169.9	215
169.9	378
170	205
170	290
170.2	263
170.2	277
170.3	523
170.4	299
170.4	328
170.4	403
170.6	285
170.7	338
170.8	296
170.8	502
171	274
171.1	203
171.1	246
171.2	321
171.2	333
171.2	356
171.4	505
171.5	265
171.5	317
171.7	275
171.7	525
171.8	345
171.9	339
171.9	415
171.9	517
172.1	187
172.1	342
172.1	501
172.2	310
172.3	522
172.4	388
172.5	238
172.5	330
172.5	390
172.5	391
172.5	421
172.6	322
172.6	336
172.7	284
172.7	292
172.8	380
172.9	387
172.9	399
173	503
173.1	243
173.1	304
173.2	293
173.2	340
173.2	371
173.3	231
173.3	250
173.4	270
173.4	327
173.5	504
174	288
174	341
174	344
174.1	225
174.1	254
174.1	348
174.1	353
174.2	260
174.2	283
174.3	289
174.4	410
174.6	259
174.8	240
174.8	294
174.8	297
175.2	286
175.2	313
175.3	266
175.5	315
175.5	524
175.6	324
175.7	213
175.7	414
175.8	318
175.8	357
175.8	502
175.9	375
176.1	280
176.1	331
176.2	309
176.3	237
176.3	308
176.3	385
176.3	516
176.4	329
176.4	349
176.5	191
176.5	241
176.7	323
176.8	258
177	256
177	503
177.1	206
177.2	295
177.2	354
177.3	224
177.3	382
177.4	248
177.5	372
177.5	374
177.6	281
177.7	257
177.7	347
177.7	363
177.9	273
177.9	504
178.3	346
178.4	267
178.4	332
178.5	505
178.6	232
178.6	334
178.6	413
178.7	239
178.7	287
178.7	290
178.8	200
178.8	276
178.8	278
178.8	320
178.9	401
179.1	255
179.1	325
179.2	311
179.2	314
179.3	272
179.4	326
179.4	370
179.6	291
179.6	364
179.6	389
179.7	223
179.8	222
179.8	319
180	244
180.1	212
180.1	365
180.2	306
180.2	316
180.2	402
180.3	247
180.3	405
180.5	268
180.5	366
180.6	279
180.6	502
180.7	209
180.7	307
180.9	233
180.9	503
181.1	252
181.1	362
181.4	423
181.5	305
181.5	337
181.6	504
181.7	261
181.7	271
181.9	350
181.9	394
182	501
182.2	360
182.2	361
182.2	523
182.3	301
182.3	312
182.3	369
182.4	235
182.4	236
182.5	282
182.5	525
182.7	317
182.8	373
182.9	304
182.9	333
183.1	298
183.1	343
183.2	302
183.3	253
183.3	303
183.3	355
183.5	330
183.5	526
183.6	338
183.6	521
183.7	269
183.8	217
183.9	518
184	227
184	242
184	245
184.1	322
184.1	336
184.2	300
184.3	246
184.3	283
184.4	220
184.5	260
184.5	277
184.5	367
185	262
185.1	398
185.2	292
185.2	380
185.3	274
185.3	284
185.3	285
185.3	505
185.4	502
185.4	503
185.5	293
185.6	219
185.6	275
185.6	348
185.6	378
185.8	504
186	263
186	376
186	515
186.3	254
186.3	299
186.6	178
186.6	318
186.8	344
187	331
187.1	297
187.3	228
187.4	324
187.4	359
187.6	352
187.8	258
188.1	238
188.1	391
188.2	358
188.4	286
188.4	411
188.5	234
188.5	243
188.5	294
188.6	229
188.7	375
188.7	522
188.8	250
188.8	265
188.8	289
188.8	514
189	310
189.1	287
189.1	296
189.1	372
189.1	381
189.2	339
189.4	335
189.7	240
189.7	248
189.8	267
189.9	270
190	273
190	325
190.2	503
190.3	259
190.4	251
190.4	323
190.5	221
190.5	237
190.5	280
190.5	314
190.5	340
190.5	363
190.7	502
190.9	346
190.9	351
190.9	504
191.1	327
191.2	288
191.3	290
191.4	329
191.6	399
191.8	313
192.3	256
192.3	332
192.5	385
192.7	264
192.7	315
192.7	328
192.8	241
192.8	309
192.8	505
193.1	349
193.2	257
193.2	524
193.3	396
193.3	501
193.6	278
193.6	281
193.6	326
193.9	308
194	320
194.1	341
194.4	305
194.5	225
194.5	311
194.5	337
194.6	239
194.6	319
194.7	523
195	503
195.2	249
195.2	345
195.6	283
195.7	246
195.8	301
195.8	362
195.8	504
196	400
196	525
196.1	272
196.2	291
196.5	231
196.6	279
196.6	282
196.6	304
196.6	502
196.9	307
197	357
197.1	416
197.2	261
197.2	350
197.3	295
197.4	317
197.4	333
197.7	316
197.8	271
197.9	276
198.1	293
198.3	330
198.5	306
198.5	370
198.6	338
198.8	334
199.5	292
199.6	336
199.6	512
199.7	322
200	233
200	504
200.1	361
200.2	230
200.2	503
200.6	266
200.7	269
200.9	277
200.9	354
201	378
201.1	318
201.3	517
201.5	287
201.7	344
201.8	300
202.1	324
202.2	268
202.8	298
202.9	314
202.9	348
202.9	355
203	262
203.1	258
203.1	502
203.6	274
204.2	331
204.3	254
204.3	325
204.4	299
204.8	376
205	312
205	373
205.3	224
205.5	284
205.5	504
205.7	321
205.9	263
205.9	503
206.3	275
206.4	289
206.6	294
206.9	329
207	513
207.9	346
208.1	297
209.2	286
210.4	310
211.8	305
213.8	502
215.5	516

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