State and location dependence of action potential metabolic cost (Hallermann et al., 2012)

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Accession:144526
With this model of a layer 5 pyramidal neuron the state and location dependence of the ATP usage and the metabolic efficiency of action potentials can be analyzed. Model parameters were constrained by direct subcellular recordings at dendritic, somatic and axonal compartments.
Reference:
1 . Hallermann S, de Kock CP, Stuart GJ, Kole MH (2012) State and location dependence of action potential metabolic cost in cortical pyramidal neurons. Nat Neurosci 15:1007-14 [PubMed]
Model Information (Click on a link to find other models with that property)
Model Type: Neuron or other electrically excitable cell;
Brain Region(s)/Organism: Neocortex;
Cell Type(s): Neocortex L5/6 pyramidal GLU cell;
Channel(s): I Na,t; I K;
Gap Junctions:
Receptor(s):
Gene(s):
Transmitter(s):
Simulation Environment: NEURON;
Model Concept(s): Action Potential Initiation; Action Potentials;
Implementer(s): Hallermann, Stefan [hallermann at medizin.uni-leipzig.de]; Kole, Maarten [m.kole at nin.knaw.nl];
Search NeuronDB for information about:  Neocortex L5/6 pyramidal GLU cell; I Na,t; I K;
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HallermannEtAl2012
readme.txt *
Cad.mod *
CaH.mod *
CaT.mod *
charge.mod *
h.mod *
Kca.mod *
Kv.mod *
Kv1_axonal.mod *
Kv7.mod *
na8st.mod
nax8st.mod
28_04_10_num19.hoc *
all_28_04_10_num19.ses *
Cell parameters.hoc
charge.hoc *
mosinit.hoc *
                            
TITLE Ih-current

UNITS {
	(mA) = (milliamp)
	(mV) = (millivolt)
     (mM) = (milli/liter)

}

INDEPENDENT {t FROM 0 TO 1 WITH 1 (ms)}

PARAMETER {
	dt (ms)
	v (mV)
     eh = -47  (mV) 		:ih-reversal potential by Berger	  
	gbar = 0.00015 (mho/cm2)	:density on dendrite assuming 150pA current and 				150mV driving force (=200pS/um2)
	
}


NEURON {
	SUFFIX ih
	NONSPECIFIC_CURRENT Ih
	RANGE Ih,gbar
}

STATE {
	h
}

ASSIGNED {
	Ih (mA/cm2)
}

INITIAL {
	h=alpha(v)/(beta(v)+alpha(v))
}

BREAKPOINT {
	SOLVE state METHOD cnexp
	Ih = gbar*h*(v-eh)
}

FUNCTION alpha(v(mV)) {
	alpha = 0.001*6.43*(v+154.9)/(exp((v+154.9)/11.9)-1)			:parameters are estimated by direct fitting of HH model to activation time constants and voltage actication curve recorded at  34C by M. Kole
}

FUNCTION beta(v(mV)) {
	beta = 0.001*193*exp(v/33.1)			
}

DERIVATIVE state {     : exact when v held constant; integrates over dt step
	h' = (1-h)*alpha(v) - h*beta(v)
}









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