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The corresponding page is
https://modeldb.science/169457
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Schiz.-linked gene effects on intrinsic single-neuron excitability (Maki-Marttunen et al. 2016)
 
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Model Information
Model File
Citations
Accession:
169457
Python scripts for running NEURON simulations that model a layer V pyramidal cell with certain genetic variants implemented. The genes included are obtained from genome-wide association studies of schizophrenia.
Reference:
1 .
Mäki-Marttunen T, Halnes G, Devor A, Witoelar A, Bettella F, Djurovic S, Wang Y, Einevoll GT, Andreassen OA, Dale AM (2016) Functional Effects of Schizophrenia-Linked Genetic Variants on Intrinsic Single-Neuron Excitability: A Modeling Study.
Biol Psychiatry Cogn Neurosci Neuroimaging
1
:49-59
[
PubMed
]
Model Information
(Click on a link to find other models with that property)
Model Type:
Neuron or other electrically excitable cell;
Brain Region(s)/Organism:
Cell Type(s):
Neocortex L5/6 pyramidal GLU cell;
Channel(s):
I Na,p;
I Na,t;
I L high threshold;
I T low threshold;
I K;
I K,leak;
I M;
I h;
I K,Ca;
I A, slow;
Ca pump;
Gap Junctions:
Receptor(s):
Gene(s):
Nav1.1 SCN1A;
Nav1.7 SCN9A;
Cav3.3 CACNA1I;
Cav1.3 CACNA1D;
Cav1.2 CACNA1C;
Kv2.1 KCNB1;
HCN1;
Transmitter(s):
Simulation Environment:
NEURON;
Python;
Model Concept(s):
Coincidence Detection;
Active Dendrites;
Detailed Neuronal Models;
Schizophrenia;
Implementer(s):
Maki-Marttunen, Tuomo [tuomomm at uio.no];
Search NeuronDB
for information about:
Neocortex L5/6 pyramidal GLU cell
;
I Na,p
;
I Na,t
;
I L high threshold
;
I T low threshold
;
I K
;
I K,leak
;
I M
;
I h
;
I K,Ca
;
I A, slow
;
Ca pump
;
/
Maki-MarttunenEtAl2015
models
L5PCbiophys3.hoc
*
Other models using L5PCbiophys3.hoc:
Cortical Layer 5b pyr. cell with [Na+]i mechanisms, from Hay et al 2011 (Zylbertal et al 2017)
Effect of ionic diffusion on extracellular potentials (Halnes et al 2016)
L5b PC model constrained for BAC firing and perisomatic current step firing (Hay et al., 2011)
Layer V pyramidal cell functions and schizophrenia genetics (Mäki-Marttunen et al 2019)
Layer V pyramidal cell model with reduced morphology (Mäki-Marttunen et al 2018)
Microcircuits of L5 thick tufted pyramidal cells (Hay & Segev 2015)
Pleiotropic effects of SCZ-associated genes (Mäki-Marttunen et al. 2017)
SCZ-associated variant effects on L5 pyr cell NN activity and delta osc. (Maki-Marttunen et al 2018)
L5PCtemplate.hoc
*
Other models using L5PCtemplate.hoc:
Effect of ionic diffusion on extracellular potentials (Halnes et al 2016)
Layer V pyramidal cell functions and schizophrenia genetics (Mäki-Marttunen et al 2019)
Layer V pyramidal cell model with reduced morphology (Mäki-Marttunen et al 2018)
Pleiotropic effects of SCZ-associated genes (Mäki-Marttunen et al. 2017)
SCZ-associated variant effects on L5 pyr cell NN activity and delta osc. (Maki-Marttunen et al 2018)
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