This package is running with the NEURON simulation program written by Michael
Hines and available on internet at:
The package contains mechanisms (.mod files) and programs (.oc files) needed
to simulate interconnected thalamocortical (TRN) relative to the paper:
Wang, J., Chen, S., Nolan, M. F. and Siegelbaum, S. A. (2002) Activity-
Dependent Regulation of HCN Pacemaker Channels by Cyclic AMP: Signaling
through Dynamic Allosteric Coupling. Neuron 36(3), 451-462.
Demonstration of the physiological consequences of the cyclic
allosteric gating scheme for Ih mediated by HCN2 in
thalamocortical relay cells. This simulation will reproduce
the current-clamp experiment to examine sag and rebound
responses to a current step and depolarizing responses to a
cAMP pulse described in figure 7 of Wang et al. 2002. The
thalamocortical cell properties are modified from Destexhe et
al 1996, with Ih removed and replaced with a kinetic model of
HCN2 and the T-type Ca2+ current also removed to focus on the
role of the H-current.
see Fig. 7 of Wang et al, 2002
HH2.mod : fast sodium spikes (Na and K currents)
kleak.mod : leak K+ current
cAMPclamp.mod : clamp intracellular cAMP concentration.
hcn2.mod : HCN2 channel gating from Wang et al 2002.
TCmod.tem : Template file for a single compartment model of a thalamocortical
: neuron modified from the model described by Destexhe et al, 1995.
HOW TO RUN
Under unix systems:
to compile the mod files use the command nrnivmodl
and run the simulation hoc file with the command
Under Windows using NEURON 5.2:
to compile the mod files use the "mknrndll" command.
A double click on the simulation file
TCIClamp2.hoc will open the simulation window.
Once the menu and graphics interface has appeared, choose the concentration of
cAMP inside the cell first, otherwise 0 cAMP will be chosen. Then click the
currentstep button to see the simulation of the membrane potential changes of
the cell in the presense of the specified concentration of cAMP or click the cAMP
pulse button to see the simulation of the fluctuation of the membrane potential if
a pulse of specified concentration of cAMP is given to the cell...
For more information about how to get NEURON and how to install it, please
refer to the following sites:
Contact for more information:
email: Matt Nolan at email@example.com or firstname.lastname@example.org