// genesis
// Setting the axonal propagation velocity
float CABLE_VEL = 1 // scale factor = 1/(cable velocity) sec/meter
float destlim = {C23FS_ST4RS_destlim}
/*
* Usage :
* volumeconnect source-path destination-path
* [-relative]
* [-sourcemask {box,ellipse} x1 y1 x2 y2]
* [-sourcehole {box,ellipse} x1 y1 x2 y2]
* [-destmask {box,ellipse} x1 y1 x2 y2]
* [-desthole {box,ellipse} x1 y1 x2 y2]
* [-probability p]
*/
echo Making connections from the C23FS cells to the ST4RS cells.
// C23FS - ST4RS GABAa
rvolumeconnect /C23FSnet/C23FS[]/soma/spk15 \
/ST4RSnet/ST4RS[]/axona/Inh_ch17C23FSGABAa@all \
-relative \
-sourcemask box -1 -1 -1 1 1 1 \
-destmask box -{destlim} -{destlim} -1 {destlim} {destlim} 1 \
-probability 1.0*{C23FS_ST4RS_prob}
echo Setting weights and delays for C23FS->ST4RS connections.
// assigning delays using the volumedelay function
/*
* Usage :
* volumedelay path
* [-fixed delay]
* [-radial propagation_velocity]
* [-uniform range] (not used here)
* [-gaussian sd max] (not used here)
* [-exp mid max] (not used here)
* [-absoluterandom] (not used here)
*/
rvolumedelay /C23FSnet/C23FS[]/soma/spk15 -radial {C23FS_ST4RS_axdelayCV} -add -gaussian {C23FS_ST4RS_axdelaystdev} {C23FS_ST4RS_axdelaymaxdev}
//C23FS - ST4RS GABAa
syndelay /ST4RSnet/ST4RS[]/axona/Inh_ch17C23FSGABAa {C23FS_ST4RS_syndelay} -add -gaussian {C23FS_ST4RS_syndelaystdev} {C23FS_ST4RS_syndelaymaxdev}
// assigning weights using the volumeweight function
/*
* Usage :
* volumeweight sourcepath
* [-fixed weight]
* [-decay decay_rate max_weight min_weight]
* [-uniform range]
* [-gaussian sd max]
* [-exponential mid max]
* [-absoluterandom]
*/
rvolumeweight /C23FSnet/C23FS[]/soma/spk15 -decay {C23FSdecayrate} {C23FSmaxwgt} {C23FSminwgt}
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