A multilayer cortical model to study seizure propagation across microdomains (Basu et al. 2015)

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Accession:206238
A realistic neural network was used to simulate a region of neocortex to obtain extracellular LFPs from ‘virtual micro-electrodes’ and produce test data for comparison with multisite microelectrode recordings. A model was implemented in the GENESIS neurosimulator. A simulated region of cortex was represented by layers 2/3, 5/6 (interneurons and pyramidal cells) and layer 4 stelate cells, spaced at 25 µm in each horizontal direction. Pyramidal cells received AMPA and NMDA inputs from neighboring cells at the basal and apical dendrites. The LFP data was generated by simulating 16-site electrode array with the help of ‘efield’ objects arranged at the predetermined positions with respect to the surface of the simulated network. The LFP for the model is derived from a weighted average of the current sources summed over all cellular compartments. Cell models were taken from from Traub et al. (2005) J Neurophysiol 93(4):2194-232.
References:
1 . Basu I, Kudela P, Korzeniewska A, Franaszczuk PJ, Anderson WS (2015) A study of the dynamics of seizure propagation across micro domains in the vicinity of the seizure onset zone. J Neural Eng 12:046016 [PubMed]
2 . Basu I, Kudela P, Anderson WS (2014) Determination of seizure propagation across microdomains using spectral measures of causality. Conf Proc IEEE Eng Med Biol Soc 2014:6349-52 [PubMed]
Model Information (Click on a link to find other models with that property)
Model Type: Realistic Network;
Brain Region(s)/Organism: Neocortex;
Cell Type(s): Neocortex U1 L2/6 pyramidal intratelencephalic GLU cell; Neocortex U1 L5B pyramidal pyramidal tract GLU cell; Thalamus reticular nucleus GABA cell; Neocortex spiking low threshold (LTS) neuron; Neocortex spiking regular (RS) neuron; Neocortex layer 2-3 interneuron; Neocortex layer 5 interneuron;
Channel(s): I Na,p; I Na,t; I K; I A; I M; I h; I K,Ca; I A, slow; I L high threshold; I T low threshold; I Calcium;
Gap Junctions: Gap junctions;
Receptor(s): AMPA; GabaA; NMDA;
Gene(s):
Transmitter(s): Glutamate; Gaba; Amino Acids;
Simulation Environment: GENESIS;
Model Concept(s): Activity Patterns; Epilepsy;
Implementer(s): Anderson, WS ; Kudela, Pawel ;
Search NeuronDB for information about:  Thalamus reticular nucleus GABA cell; Neocortex U1 L5B pyramidal pyramidal tract GLU cell; Neocortex U1 L2/6 pyramidal intratelencephalic GLU cell; GabaA; AMPA; NMDA; I Na,p; I Na,t; I L high threshold; I T low threshold; I A; I K; I M; I h; I K,Ca; I Calcium; I A, slow; Amino Acids; Gaba; Glutamate;
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BasuEtAl2015
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ModelDescription.pdf
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P6RSd_P6RSc.g
P6RSd_P6RSd.g
P6RSd_P6RSd_Gap.g
P6RSd_raninput.g
P6RSd_ST4RS.g
P6RSd_synapsedefs.g
P6RSd_TCR.g
P6RSdcell3Dpk.p
P6RSdchanpk.g
P6RSdprotodefs.g
P6RSsyncond.g
pgenesis_command
protodefs.g
protospikeB23FS.g
protospikeB5FS.g
protospikeC23FS.g
protospikeC5FS.g
protospikeI23LTS.g
protospikeI5LTS.g
protospikenRT.g
protospikeP23FRBa.g
protospikeP23RSa.g
protospikeP23RSb.g
protospikeP23RSc.g
protospikeP23RSd.g
protospikeP5IBa.g
protospikeP5IBb.g
protospikeP5IBc.g
protospikeP5IBd.g
protospikeP5RSa.g
protospikeP6RSa.g
protospikeP6RSb.g
protospikeP6RSc.g
protospikeP6RSd.g
protospikeST4RS.g
protospikeTCR.g
randominputdefs.g
spikedefs.g
ST4RS.g
ST4RS_B23FS.g
ST4RS_B5FS.g
ST4RS_C23FS.g
ST4RS_C5FS.g
ST4RS_I23LTS.g
ST4RS_I5LTS.g
ST4RS_P23FRBa.g
ST4RS_P23RSa.g
ST4RS_P23RSb.g
ST4RS_P23RSc.g
ST4RS_P23RSd.g
ST4RS_P5IBa.g
ST4RS_P5IBb.g
ST4RS_P5IBc.g
ST4RS_P5IBd.g
ST4RS_P5RSa.g
ST4RS_P6RSa.g
ST4RS_P6RSb.g
ST4RS_P6RSc.g
ST4RS_P6RSd.g
ST4RS_raninput.g
ST4RS_ST4RS.g
ST4RS_ST4RS_Gap.g
ST4RS_synapsedefs.g
ST4RScell3Dpk.p
ST4RSchanpk.g
ST4RSprotodefs.g
ST4RSsyncond.g
synapticdelays.g *
synapticprobsTraub.g
synchansB23FS.g *
synchansB5FS.g *
synchansC23FS.g *
synchansC5FS.g *
synchansI23LTS.g *
synchansI5LTS.g *
synchansnRT.g *
synchansP23FRBa.g *
synchansP23RSa.g *
synchansP23RSb.g *
synchansP23RSc.g *
synchansP23RSd.g *
synchansP5IBa.g *
synchansP5IBb.g *
synchansP5IBc.g *
synchansP5IBd.g *
synchansP5RSa.g *
synchansP6RSa.g *
synchansP6RSb.g *
synchansP6RSc.g *
synchansP6RSd.g *
synchansSPIKEs.g *
synchansSPIKEs_base.g
synchansST4RS.g
synchansTCR.g *
syncond.g
syncond2.g
TCR.g
TCR_B23FS.g
TCR_B5FS.g
TCR_C23FS.g
TCR_C5FS.g
TCR_nRT.g
TCR_P23FRBa.g
TCR_P23RSa.g
TCR_P23RSb.g
TCR_P23RSc.g
TCR_P23RSd.g
TCR_P5IBa.g
TCR_P5IBb.g
TCR_P5IBc.g
TCR_P5IBd.g
TCR_P5RSa.g
TCR_P6RSa.g
TCR_P6RSb.g
TCR_P6RSc.g
TCR_P6RSd.g
TCR_raninput.g
TCR_ST4RS.g
TCR_synapsedefs.g
TCRcellpk.p
TCRchanpk.g
TCRprotodefs.g
TCRsyncond.g
                            
// I23LTS3Dcell.p - Cell parameter file

//	Format of file :
// x,y,z,dia are in microns, all other units are SI (Meter Kilogram Sec Amp)
// In polar mode 'r' is in microns, theta and phi in degrees 
// Control line options start with a '*'
// The format for each compartment parameter line is :
//name	parent	r	theta	phi	d	ch	dens ...
//in polar mode, and in cartesian mode :
//name	parent	x	y	z	d	ch	dens ...
// For channels, "dens" =  maximum conductance per unit area of compartment
// For spike elements, "dens" is the spike threshold
//		Coordinate mode
*relative
*cartesian
*asymmetric

//		Specifying constants
   *set_compt_param	RM	2.50  //0.33333 (2.50)
   *set_compt_param	RA	2.00  //0.3 (2.00)
   *set_compt_param	CM	0.01  //0.01 (0.01)
   *set_compt_param     EREST_ACT	-0.0660   // -0.0690
   *set_compt_param     ELEAK           -0.0660   // -0.0700


//SOMA *************************************************************   
// For the soma, use the leakage potential (-0.07 + 0.0106) for Em
//*set_compt_param     ELEAK	-0.0594
// Actually, after Cunningham et al. PNAS 2004;101:7152-7157, will maintain
// leakage potential at ELEAK   -0.07
soma  none  0   0  20 15.0    Ca_s18  -5.5173713E16      NaF18            600   \
                              KDR18       1000           KAHPs18            1   \
                              KA18          10           K218               5   \
                              CaH18          1           KCs18            250   \
                              KM18           5           CaL18              0.5

//*set_compt_param        ELEAK   -0.075
*set_compt_param	RM	2.50  //0.33333 (2.50)
*set_compt_param	RA	2.00  //0.3 (2.00)
*set_compt_param	CM	0.01  //0.01 (0.01)

//PROXIMAL DENDRITE COMPARTMENTS ***************************************

// proxdendN   Cunningham et al., PNAS  2004;101:7152-7157
proxdendN  soma  0  0  40 2.12  Ca_d18 -3.90380092E17    NaF18     600   \
                                KDR18       1000         KAHPd18     1   \
                                KA18          10         K218        5   \
                                CaH18          1         KCd18     250   \
                                KM18           5         CaL18      0.5 
                              
// proxdendE   Cunningham et al., PNAS  2004;101:7152-7157
proxdendE  soma  40  0  0 2.12  Ca_d18 -3.90380092E17    NaF18     600   \
                                KDR18       1000         KAHPd18     1   \
                                KA18          10         K218        5   \
                                CaH18          1         KCd18     250   \
                                KM18           5         CaL18       0.5

// proxdendS   Cunningham et al., PNAS  2004;101:7152-7157
proxdendS  soma  0  0  -40 2.12 Ca_d18 -3.90380092E17        NaF18     600   \
                                KDR18       1000         KAHPd18     1   \
                                KA18          10         K218        5   \
                                CaH18          1         KCd18     250   \
                                KM18           5         CaL18       0.5

// proxdendW   Cunningham et al., PNAS  2004;101:7152-7157
proxdendW  soma  -40 0  0 2.12  Ca_d18 -3.90380092E17        NaF18     600   \
                                KDR18       1000         KAHPd18     1   \
                                KA18          10         K218        5   \
                                CaH18          1         KCd18     250   \
                                KM18           5         CaL18       0.5

*set_compt_param	RM	2.50  //0.33333 (2.50)
*set_compt_param	RA	2.00  //0.3 (2.00)
*set_compt_param	CM	0.01  //0.01 (0.01)
//*set_compt_param     ELEAK	-0.075


//North DISTAL DENDRITE COMPARTMENTS ***************************************
// distdendNlonga   Cunningham et al., PNAS  2004;101:7152-7157
distdendNlonga  proxdendN  -6.84  11.8 37.6  1.34 Ca_d18 -6.2070579E17     NaF18     600   \
                                                  KDR18       1000         KAHPd18     1   \
                                                  KA18          10         K218        5   \
                                                  CaH18          1         KCd18     250   \
                                                  KM18           5         CaL18       0.5

// distdendNlongb   Cunningham et al., PNAS  2004;101:7152-7157
distdendNlongb  distdendNlonga  -6.84 11.8 37.6 0.84  Ca_d18 -9.8766113E17     NaF18     100   \
                                                      KDR18        100         KAHPd18     1   \
                                                      KA18          10         K218        5   \
                                                      CaH18          2         KCd18     250   \
                                                      KM18           5         CaL18      20 

// distdendNlongc   Cunningham et al., PNAS  2004;101:7152-7157
distdendNlongc  distdendNlongb  -6.84 11.8 37.6 0.84    Ca_d18 -9.8767027E17     NaF18     100   \
                                                        KDR18        100         KAHPd18     1   \
                                                        KA18          10         K218        5   \
                                                        CaH18          2         KCd18     250   \
                                                        KM18           5         CaL18      20    

// distdendNlongd   Cunningham et al., PNAS  2004;101:7152-7157
distdendNlongd  distdendNlongc  -6.84 11.8 37.6 0.84    Ca_d18 -9.8762354E17     NaF18     100   \
                                                        KDR18        100         KAHPd18     1   \
                                                        KA18          10         K218        5   \
                                                        CaH18          2         KCd18     250   \
                                                        KM18           5         CaL18      20    

// distdendNlonge   Cunningham et al., PNAS  2004;101:7152-7157
distdendNlonge  distdendNlongd  -6.84 11.8 37.6 0.84    Ca_d18 -9.8767322E17     NaF18     100   \
                                                        KDR18        100         KAHPd18     1   \
                                                        KA18          10         K218        5   \
                                                        CaH18          2         KCd18     250   \
                                                        KM18           5         CaL18      20    

// distdendNlongf   Cunningham et al., PNAS  2004;101:7152-7157
distdendNlongf  distdendNlonge  -6.84 11.8 37.6 0.84    Ca_d18 -9.8766992E17     NaF18     100   \
                                                        KDR18        100         KAHPd18     1   \
                                                        KA18          10         K218        5   \
                                                        CaH18          2         KCd18     250   \
                                                        KM18           5         CaL18      20    

// distdendNlongg   Cunningham et al., PNAS  2004;101:7152-7157
distdendNlongg  distdendNlongf  -6.84 11.8 37.6 0.84    Ca_d18 -9.8766944E17     NaF18     100   \
                                                        KDR18        100         KAHPd18     1   \
                                                        KA18          10         K218        5   \
                                                        CaH18          2         KCd18     250   \
                                                        KM18           5         CaL18      20    

// distdendNmida   Cunningham et al., PNAS  2004;101:7152-7157
distdendNmida  proxdendN  6.84  -11.8 37.6  1.34   Ca_d18 -6.2070579E17     NaF18     600   \
                                                   KDR18       1000         KAHPd18     1   \
                                                   KA18          10         K218        5   \
                                                   CaH18          1         KCd18     250   \
                                                   KM18           5         CaL18       0.5

// distdendNmidb   Cunningham et al., PNAS  2004;101:7152-7157
distdendNmidb  distdendNmida  6.84 -11.8 37.6  1.34   Ca_d18 -6.2070682E17     NaF18     100   \
                                                      KDR18        100         KAHPd18     1   \
                                                      KA18          10         K218        5   \
                                                      CaH18          2         KCd18     250   \
                                                      KM18           5         CaL18      20 

// distdendNmidc   Cunningham et al., PNAS  2004;101:7152-7157
distdendNmidc  distdendNmidb  6.84 -11.8 37.6  1.34      Ca_d18 -6.2070943E17     NaF18     100   \
                                                         KDR18        100         KAHPd18     1   \
                                                         KA18          10         K218        5   \
                                                         CaH18          2         KCd18     250   \
                                                         KM18           5         CaL18      20    

// distdendNshorta   Cunningham et al., PNAS  2004;101:7152-7157
distdendNshorta  distdendNlonga   6.84  -11.8 37.6  0.84  Ca_d18 -9.8766113E17     NaF18     100   \
                                                          KDR18        100         KAHPd18     1   \
                                                          KA18          10         K218        5   \
                                                          CaH18          2         KCd18     250   \
                                                          KM18           5         CaL18      20 

// distdendNshortb   Cunningham et al., PNAS  2004;101:7152-7157
distdendNshortb  distdendNshorta 6.84 -11.8 37.6  0.84   Ca_d18 -9.8767192E17     NaF18     100   \
                                                         KDR18        100         KAHPd18     1   \
                                                         KA18          10         K218        5   \
                                                         CaH18          2         KCd18     250   \
                                                         KM18           5         CaL18      20    

//East DISTAL DENDRITE COMPARTMENTS ***************************************
// distdendElonga   Cunningham et al., PNAS  2004;101:7152-7157
distdendElonga  proxdendE  32.5  18.8  13.68 1.34  Ca_d18 -6.2070579E17     NaF18     600   \
                                                   KDR18       1000         KAHPd18     1   \
                                                   KA18          10         K218        5   \
                                                   CaH18          1         KCd18     250   \
                                                   KM18           5         CaL18       0.5

// distdendElongb   Cunningham et al., PNAS  2004;101:7152-7157
distdendElongb  distdendElonga  32.5 18.8  13.68 0.84 Ca_d18 -9.8766113E17     NaF18     100   \
                                                      KDR18        100         KAHPd18     1   \
                                                      KA18          10         K218        5   \
                                                      CaH18          2         KCd18     250   \
                                                      KM18           5         CaL18      20

// distdendElongc   Cunningham et al., PNAS  2004;101:7152-7157
distdendElongc  distdendElongb  32.5 18.8  13.68 0.84   Ca_d18 -9.8767027E17     NaF18     100   \
                                                        KDR18        100         KAHPd18     1   \
                                                        KA18          10         K218        5   \
                                                        CaH18          2         KCd18     250   \
                                                        KM18           5         CaL18      20    

// distdendElongd   Cunningham et al., PNAS  2004;101:7152-7157
distdendElongd  distdendElongc  32.5 18.8  13.68 0.84   Ca_d18 -9.8762354E17     NaF18     100   \
                                                        KDR18        100         KAHPd18     1   \
                                                        KA18          10         K218        5   \
                                                        CaH18          2         KCd18     250   \
                                                        KM18           5         CaL18      20    

// distdendElonge   Cunningham et al., PNAS  2004;101:7152-7157
distdendElonge  distdendElongd  32.5 18.8  13.68 0.84   Ca_d18 -9.8767322E17     NaF18     100   \
                                                        KDR18        100         KAHPd18     1   \
                                                        KA18          10         K218        5   \
                                                        CaH18          2         KCd18     250   \
                                                        KM18           5         CaL18      20    

// distdendElongf   Cunningham et al., PNAS  2004;101:7152-7157
distdendElongf  distdendElonge  32.5 18.8  13.68 0.84   Ca_d18 -9.8766992E17     NaF18     100   \
                                                        KDR18        100         KAHPd18     1   \
                                                        KA18          10         K218        5   \
                                                        CaH18          2         KCd18     250   \
                                                        KM18           5         CaL18      20    

// distdendElongg   Cunningham et al., PNAS  2004;101:7152-7157
distdendElongg  distdendElongf  32.5 18.8  13.68 0.84   Ca_d18 -9.8766944E17     NaF18     100   \
                                                        KDR18        100         KAHPd18     1   \
                                                        KA18          10         K218        5   \
                                                        CaH18          2         KCd18     250   \
                                                        KM18           5         CaL18      20    

// distdendEmida   Cunningham et al., PNAS  2004;101:7152-7157
distdendEmida  proxdendE  32.5 18.8  -13.68 1.34   Ca_d18 -6.2070579E17     NaF18     600   \
                                                   KDR18       1000         KAHPd18     1   \
                                                   KA18          10         K218        5   \
                                                   CaH18          1         KCd18     250   \
                                                   KM18           5         CaL18       0.5

// distdendEmidb   Cunningham et al., PNAS  2004;101:7152-7157
distdendEmidb  distdendEmida 32.5 18.8  -13.68  1.34   Ca_d18 -6.2070682E17     NaF18     100   \
                                                      KDR18        100         KAHPd18     1   \
                                                      KA18          10         K218        5   \
                                                      CaH18          2         KCd18     250   \
                                                      KM18           5         CaL18      20

// distdendEmidc   Cunningham et al., PNAS  2004;101:7152-7157
distdendEmidc  distdendEmidb  32.5 18.8  -13.68  1.34   Ca_d18 -6.2070943E17  NaF18     100   \
                                                        KDR18        100         KAHPd18     1   \
                                                        KA18          10         K218        5   \
                                                        CaH18          2         KCd18     250   \
                                                        KM18           5         CaL18      20    

// distdendEshorta   Cunningham et al., PNAS  2004;101:7152-7157
distdendEshorta  distdendElonga   32.5  18.8   -13.68 0.84 Ca_d18 -9.8766113E17     NaF18     100   \
                                                          KDR18        100         KAHPd18     1   \
                                                          KA18          10         K218        5   \
                                                          CaH18          2         KCd18     250   \
                                                          KM18           5         CaL18      20

// distdendEshortb   Cunningham et al., PNAS  2004;101:7152-7157
distdendEshortb  distdendEshorta 32.5 18.8  -13.68 0.84 Ca_d18 -9.8767192E17     NaF18     100   \
                                                        KDR18        100         KAHPd18     1   \
                                                        KA18          10         K218        5   \
                                                        CaH18          2         KCd18     250   \
                                                        KM18           5         CaL18      20    

//South DISTAL DENDRITE COMPARTMENTS ***************************************
// distdendSlonga   Cunningham et al., PNAS  2004;101:7152-7157
distdendSlonga  proxdendS  6.84  -11.8  -37.6 1.34  Ca_d18 -6.2070579E17     NaF18     600   \
                                                    KDR18       1000         KAHPd18     1   \
                                                    KA18          10         K218        5   \
                                                    CaH18          1         KCd18     250   \
                                                    KM18           5         CaL18       0.5

// distdendSlongb   Cunningham et al., PNAS  2004;101:7152-7157
distdendSlongb  distdendSlonga  6.84 -11.8 -37.6 0.84  Ca_d18 -9.8766113E17     NaF18     100   \
                                                      KDR18        100         KAHPd18     1   \
                                                      KA18          10         K218        5   \
                                                      CaH18          2         KCd18     250   \
                                                      KM18           5         CaL18      20

// distdendSlongc   Cunningham et al., PNAS  2004;101:7152-7157
distdendSlongc  distdendSlongb  6.84 -11.8 -37.6 0.84    Ca_d18 -9.8767027E17     NaF18     100   \
                                                         KDR18        100         KAHPd18     1   \
                                                         KA18          10         K218        5   \
                                                         CaH18          2         KCd18     250   \
                                                         KM18           5         CaL18      20    

// distdendSlongd   Cunningham et al., PNAS  2004;101:7152-7157
distdendSlongd  distdendSlongc  6.84 -11.8 -37.6 0.84    Ca_d18 -9.8762354E17     NaF18     100   \
                                                         KDR18        100         KAHPd18     1   \
                                                         KA18          10         K218        5   \
                                                         CaH18          2         KCd18     250   \
                                                         KM18           5         CaL18      20    

// distdendSlonge   Cunningham et al., PNAS  2004;101:7152-7157
distdendSlonge  distdendSlongd  6.84 -11.8 -37.6 0.84    Ca_d18 -9.8767322E17     NaF18     100   \
                                                         KDR18        100         KAHPd18     1   \
                                                         KA18          10         K218        5   \
                                                         CaH18          2         KCd18     250   \
                                                         KM18           5         CaL18      20    

// distdendSlongf   Cunningham et al., PNAS  2004;101:7152-7157
distdendSlongf  distdendSlonge  6.84 -11.8 -37.6 0.84    Ca_d18 -9.8766992E17     NaF18     100   \
                                                         KDR18        100         KAHPd18     1   \
                                                         KA18          10         K218        5   \
                                                         CaH18          2         KCd18     250   \
                                                         KM18           5         CaL18      20    

// distdendSlongg   Cunningham et al., PNAS  2004;101:7152-7157
distdendSlongg  distdendSlongf  6.84 -11.8 -37.6 0.84    Ca_d18 -9.8766944E17     NaF18     100   \
                                                         KDR18        100         KAHPd18     1   \
                                                         KA18          10         K218        5   \
                                                         CaH18          2         KCd18     250   \
                                                         KM18           5         CaL18      20    

// distdendSmida   Cunningham et al., PNAS  2004;101:7152-7157
distdendSmida  proxdendS  -6.84  11.8 -37.6 1.34   Ca_d18 -6.2070579E17     NaF18     600   \
                                                   KDR18       1000         KAHPd18     1   \
                                                   KA18          10         K218        5   \
                                                   CaH18          1         KCd18     250   \
                                                   KM18           5         CaL18       0.5

// distdendSmidb   Cunningham et al., PNAS  2004;101:7152-7157
distdendSmidb  distdendSmida  -6.84 11.8  -37.6 1.34   Ca_d18 -6.2070682E17     NaF18     100   \
                                                      KDR18        100         KAHPd18     1   \
                                                      KA18          10         K218        5   \
                                                      CaH18          2         KCd18     250   \
                                                      KM18           5         CaL18      20

// distdendSmidc   Cunningham et al., PNAS  2004;101:7152-7157
distdendSmidc  distdendSmidb  -6.84 11.8 -37.6  1.34    Ca_d18 -6.2070943E17     NaF18     100   \
                                                        KDR18        100         KAHPd18     1   \
                                                        KA18          10         K218        5   \
                                                        CaH18          2         KCd18     250   \
                                                        KM18           5         CaL18      20    

// distdendSshorta   Cunningham et al., PNAS  2004;101:7152-7157
distdendSshorta  distdendSlonga   -6.84  11.8  -37.6 0.84  Ca_d18 -9.8766113E17     NaF18     100   \
                                                          KDR18        100         KAHPd18     1   \
                                                          KA18          10         K218        5   \
                                                          CaH18          2         KCd18     250   \
                                                          KM18           5         CaL18      20

// distdendSshortb   Cunningham et al., PNAS  2004;101:7152-7157
distdendSshortb  distdendSshorta -6.84 11.8 -37.6 0.84  Ca_d18 -9.8767192E17     NaF18     100   \
                                                        KDR18        100         KAHPd18     1   \
                                                        KA18          10         K218        5   \
                                                        CaH18          2         KCd18     250   \
                                                        KM18           5         CaL18      20    

//West DISTAL DENDRITE COMPARTMENTS ***************************************
// distdendWlonga   Cunningham et al., PNAS  2004;101:7152-7157
distdendWlonga  proxdendW -32.5 -18.8  13.68 1.34   Ca_d18 -6.2070579E17     NaF18     600   \
                                                    KDR18       1000         KAHPd18     1   \
                                                    KA18          10         K218        5   \
                                                    CaH18          1         KCd18     250   \
                                                    KM18           5         CaL18       0.5

// distdendWlongb   Cunningham et al., PNAS  2004;101:7152-7157
distdendWlongb  distdendWlonga -32.5 -18.8  13.68 0.84 Ca_d18 -9.8766113E17     NaF18     100   \
                                                      KDR18        100         KAHPd18     1   \
                                                      KA18          10         K218        5   \
                                                      CaH18          2         KCd18     250   \
                                                      KM18           5         CaL18      20

// distdendWlongc   Cunningham et al., PNAS  2004;101:7152-7157
distdendWlongc  distdendWlongb -32.5 -18.8  13.68 0.84   Ca_d18 -9.8767027E17     NaF18     100   \
                                                         KDR18        100         KAHPd18     1   \
                                                         KA18          10         K218        5   \
                                                         CaH18          2         KCd18     250   \
                                                         KM18           5         CaL18      20    

// distdendWlongd   Cunningham et al., PNAS  2004;101:7152-7157
distdendWlongd  distdendWlongc -32.5 -18.8  13.68 0.84   Ca_d18 -9.8762354E17     NaF18     100   \
                                                         KDR18        100         KAHPd18     1   \
                                                         KA18          10         K218        5   \
                                                         CaH18          2         KCd18     250   \
                                                         KM18           5         CaL18      20    

// distdendWlonge   Cunningham et al., PNAS  2004;101:7152-7157
distdendWlonge  distdendWlongd -32.5 -18.8 13.68 0.84   Ca_d18 -9.8767322E17     NaF18     100   \
                                                        KDR18        100         KAHPd18     1   \
                                                        KA18          10         K218        5   \
                                                        CaH18          2         KCd18     250   \
                                                        KM18           5         CaL18      20    

// distdendWlongf   Cunningham et al., PNAS  2004;101:7152-7157
distdendWlongf  distdendWlonge -32.5 -18.8  13.68 0.84   Ca_d18 -9.8766992E17     NaF18     100   \
                                                         KDR18        100         KAHPd18     1   \
                                                         KA18          10         K218        5   \
                                                         CaH18          2         KCd18     250   \
                                                         KM18           5         CaL18      20    


// distdendWlongg   Cunningham et al., PNAS  2004;101:7152-7157
distdendWlongg  distdendWlongf -32.5 -18.8  13.68 0.84   Ca_d18 -9.8766944E17     NaF18     100   \
                                                         KDR18        100         KAHPd18     1   \
                                                         KA18          10         K218        5   \
                                                         CaH18          2         KCd18     250   \
                                                         KM18           5         CaL18      20    

// distdendWmida   Cunningham et al., PNAS  2004;101:7152-7157
distdendWmida  proxdendW  -32.5 -18.8  -13.68 1.34   Ca_d18 -6.2070579E17     NaF18     600   \
                                                     KDR18       1000         KAHPd18     1   \
                                                     KA18          10         K218        5   \
                                                     CaH18          1         KCd18     250   \
                                                     KM18           5         CaL18       0.5

// distdendWmidb   Cunningham et al., PNAS  2004;101:7152-7157
distdendWmidb  distdendWmida -32.5 -18.8  -13.68  1.34   Ca_d18 -6.2070682E17     NaF18     100   \
                                                      KDR18        100         KAHPd18     1   \
                                                      KA18          10         K218        5   \
                                                      CaH18          2         KCd18     250   \
                                                      KM18           5         CaL18      20

// distdendWmidc   Cunningham et al., PNAS  2004;101:7152-7157
distdendWmidc  distdendWmidb  -32.5 -18.8  -13.68  1.34  Ca_d18 -6.2070943E17     NaF18     100   \
                                                         KDR18        100         KAHPd18     1   \
                                                         KA18          10         K218        5   \
                                                         CaH18          2         KCd18     250   \
                                                         KM18           5         CaL18      20    

// distdendWshorta   Cunningham et al., PNAS  2004;101:7152-7157
distdendWshorta  distdendWlonga   -32.5 -18.8  -13.68 0.84 Ca_d18 -9.8766113E17     NaF18     100   \
                                                          KDR18        100         KAHPd18     1   \
                                                          KA18          10         K218        5   \
                                                          CaH18          2         KCd18     250   \
                                                          KM18           5         CaL18      20

// distdendWshortb   Cunningham et al., PNAS  2004;101:7152-7157
distdendWshortb  distdendWshorta -32.5 -18.8  -13.68 0.84 Ca_d18 -9.8767192E17     NaF18     100   \
                                                          KDR18        100         KAHPd18     1   \
                                                          KA18          10         K218        5   \
                                                          CaH18          2         KCd18     250   \
                                                          KM18           5         CaL18      20    

//		Specifying constants for axonal compartment

   *set_compt_param	RM	0.1   // (0.1)
   *set_compt_param	RA	1.0   // (1.0)
   *set_compt_param	CM	0.01  // (0.01) RC = 0.001
  
// axona Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
// Differs from Traub et al., in that axon is vertical
axona  soma  0  0 -25  1.4      NaF18       4000   \
                                KDR18       4000   \
                                KA18          10   \
                                K218           5

// axonb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
// Differs from Traub et al., in that axon is vertical
axonb  axona  0  0 -50  1.2     NaF18       4000   \
                                KDR18       4000   \
                                KA18          10   \
                                K218           5

// axonLa Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
// Differs from Traub et al., in that axon is vertical
axonLa  axonb  -8.7  0 -49.2  1.0    NaF18       4000   \
                                     KDR18       4000   \
                                     KA18          10   \
                                     K218           5

// axonLb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
// Differs from Traub et al., in that axon is vertical
axonLb  axonLa  -8.7  0 -49.2  1.0   NaF18       4000   \
                                     KDR18       4000   \
                                     KA18          10   \
                                     K218           5

// axonRa Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
// Differs from Traub et al., in that axon is vertical
axonRa  axonb   8.7  0 -49.2  1.0    NaF18       4000   \
                                     KDR18       4000   \
                                     KA18          10   \
                                     K218           5 

// axonRb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
// Differs from Traub et al., in that axon is vertical
axonRb  axonRa   8.7  0 -49.2  1.0   NaF18       4000   \
                                     KDR18       4000   \
                                     KA18          10   \
                                     K218           5

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