A multilayer cortical model to study seizure propagation across microdomains (Basu et al. 2015)

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Accession:206238
A realistic neural network was used to simulate a region of neocortex to obtain extracellular LFPs from ‘virtual micro-electrodes’ and produce test data for comparison with multisite microelectrode recordings. A model was implemented in the GENESIS neurosimulator. A simulated region of cortex was represented by layers 2/3, 5/6 (interneurons and pyramidal cells) and layer 4 stelate cells, spaced at 25 µm in each horizontal direction. Pyramidal cells received AMPA and NMDA inputs from neighboring cells at the basal and apical dendrites. The LFP data was generated by simulating 16-site electrode array with the help of ‘efield’ objects arranged at the predetermined positions with respect to the surface of the simulated network. The LFP for the model is derived from a weighted average of the current sources summed over all cellular compartments. Cell models were taken from from Traub et al. (2005) J Neurophysiol 93(4):2194-232.
References:
1 . Basu I, Kudela P, Korzeniewska A, Franaszczuk PJ, Anderson WS (2015) A study of the dynamics of seizure propagation across micro domains in the vicinity of the seizure onset zone. J Neural Eng 12:046016 [PubMed]
2 . Basu I, Kudela P, Anderson WS (2014) Determination of seizure propagation across microdomains using spectral measures of causality. Conf Proc IEEE Eng Med Biol Soc 2014:6349-52 [PubMed]
Model Information (Click on a link to find other models with that property)
Model Type: Realistic Network;
Brain Region(s)/Organism: Neocortex;
Cell Type(s): Neocortex U1 L2/6 pyramidal intratelencephalic GLU cell; Neocortex U1 L5B pyramidal pyramidal tract GLU cell; Thalamus reticular nucleus GABA cell; Neocortex spiking low threshold (LTS) neuron; Neocortex spiking regular (RS) neuron; Neocortex layer 2-3 interneuron; Neocortex layer 5 interneuron;
Channel(s): I Na,p; I Na,t; I K; I A; I M; I h; I K,Ca; I A, slow; I L high threshold; I T low threshold; I Calcium;
Gap Junctions: Gap junctions;
Receptor(s): AMPA; GabaA; NMDA;
Gene(s):
Transmitter(s): Glutamate; Gaba; Amino Acids;
Simulation Environment: GENESIS;
Model Concept(s): Activity Patterns; Epilepsy;
Implementer(s): Anderson, WS ; Kudela, Pawel ;
Search NeuronDB for information about:  Thalamus reticular nucleus GABA cell; Neocortex U1 L5B pyramidal pyramidal tract GLU cell; Neocortex U1 L2/6 pyramidal intratelencephalic GLU cell; GabaA; AMPA; NMDA; I Na,p; I Na,t; I L high threshold; I T low threshold; I A; I K; I M; I h; I K,Ca; I Calcium; I A, slow; Amino Acids; Gaba; Glutamate;
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BasuEtAl2015
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ModelDescription.pdf
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P6RSd_P6RSc.g
P6RSd_P6RSd.g
P6RSd_P6RSd_Gap.g
P6RSd_raninput.g
P6RSd_ST4RS.g
P6RSd_synapsedefs.g
P6RSd_TCR.g
P6RSdcell3Dpk.p
P6RSdchanpk.g
P6RSdprotodefs.g
P6RSsyncond.g
pgenesis_command
protodefs.g
protospikeB23FS.g
protospikeB5FS.g
protospikeC23FS.g
protospikeC5FS.g
protospikeI23LTS.g
protospikeI5LTS.g
protospikenRT.g
protospikeP23FRBa.g
protospikeP23RSa.g
protospikeP23RSb.g
protospikeP23RSc.g
protospikeP23RSd.g
protospikeP5IBa.g
protospikeP5IBb.g
protospikeP5IBc.g
protospikeP5IBd.g
protospikeP5RSa.g
protospikeP6RSa.g
protospikeP6RSb.g
protospikeP6RSc.g
protospikeP6RSd.g
protospikeST4RS.g
protospikeTCR.g
randominputdefs.g
spikedefs.g
ST4RS.g
ST4RS_B23FS.g
ST4RS_B5FS.g
ST4RS_C23FS.g
ST4RS_C5FS.g
ST4RS_I23LTS.g
ST4RS_I5LTS.g
ST4RS_P23FRBa.g
ST4RS_P23RSa.g
ST4RS_P23RSb.g
ST4RS_P23RSc.g
ST4RS_P23RSd.g
ST4RS_P5IBa.g
ST4RS_P5IBb.g
ST4RS_P5IBc.g
ST4RS_P5IBd.g
ST4RS_P5RSa.g
ST4RS_P6RSa.g
ST4RS_P6RSb.g
ST4RS_P6RSc.g
ST4RS_P6RSd.g
ST4RS_raninput.g
ST4RS_ST4RS.g
ST4RS_ST4RS_Gap.g
ST4RS_synapsedefs.g
ST4RScell3Dpk.p
ST4RSchanpk.g
ST4RSprotodefs.g
ST4RSsyncond.g
synapticdelays.g *
synapticprobsTraub.g
synchansB23FS.g *
synchansB5FS.g *
synchansC23FS.g *
synchansC5FS.g *
synchansI23LTS.g *
synchansI5LTS.g *
synchansnRT.g *
synchansP23FRBa.g *
synchansP23RSa.g *
synchansP23RSb.g *
synchansP23RSc.g *
synchansP23RSd.g *
synchansP5IBa.g *
synchansP5IBb.g *
synchansP5IBc.g *
synchansP5IBd.g *
synchansP5RSa.g *
synchansP6RSa.g *
synchansP6RSb.g *
synchansP6RSc.g *
synchansP6RSd.g *
synchansSPIKEs.g *
synchansSPIKEs_base.g
synchansST4RS.g
synchansTCR.g *
syncond.g
syncond2.g
TCR.g
TCR_B23FS.g
TCR_B5FS.g
TCR_C23FS.g
TCR_C5FS.g
TCR_nRT.g
TCR_P23FRBa.g
TCR_P23RSa.g
TCR_P23RSb.g
TCR_P23RSc.g
TCR_P23RSd.g
TCR_P5IBa.g
TCR_P5IBb.g
TCR_P5IBc.g
TCR_P5IBd.g
TCR_P5RSa.g
TCR_P6RSa.g
TCR_P6RSb.g
TCR_P6RSc.g
TCR_P6RSd.g
TCR_raninput.g
TCR_ST4RS.g
TCR_synapsedefs.g
TCRcellpk.p
TCRchanpk.g
TCRprotodefs.g
TCRsyncond.g
                            
// P23FRBacell3Dpk.p

//	Format of file :
// x,y,z,dia are in microns, all other units are SI (Meter Kilogram Sec Amp)
// In polar mode 'r' is in microns, theta and phi in degrees 
// Control line options start with a '*'
// The format for each compartment parameter line is :
//name	parent	r	theta	phi	d	ch	dens ...
//in polar mode, and in cartesian mode :
//name	parent	x	y	z	d	ch	dens ...
// For channels, "dens" =  maximum conductance per unit area of compartment
// For spike elements, "dens" is the spike threshold
//		Coordinate mode
*relative
*cartesian
*asymmetric

//		Specifying constants
*set_compt_param	RM	5.0   //5.0
*set_compt_param	RA	2.50  //2.50
*set_compt_param	CM	0.009 //0.009
*set_compt_param     EREST_ACT	-0.07
*set_compt_param      ELEAK     -0.0666


//SOMA *************************************************************   
// For the soma, use the leakage potential (-0.07 + 0.0106) for Em
// Actually, after Traub et al. J Neurophys 2003;89:909-921, will maintain
// leakage potential at ELEAK   -0.07
soma  none   0  0  15  16     Ca_s22 -6.8967141E15     NaF22       1875   \
                              NaP22        4.8         KDR22       1250   \
                              KA22         300         K222           1   \
                              KM22          75         CaL22          1   \
                              CaH22         10         KCs22         45   \
                              AR22         2.5         KAHPs22        1 
*set_compt_param     RA 2.5
*set_compt_param     CM 0.018
*set_compt_param     RM 2.5


//APICAL DENDRITE COMPARTMENTS ***************************************
// apdend1 Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend1  soma  0  0  50  8      Ca_d22 -8.2760568E15     NaF22       2500   \
                                NaP22        6.4         KDR22       2500   \
                                KA22         600         K222           2   \
                                KM22         150         CaL22          2   \
                                CaH22         20         KCd22         90   \
                                AR22          5         KAHPd22        2 

// apdend2 Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend2  apdend1  0  0  50  7.2    Ca_d22 -9.1956195E15      NaF22        1875 \
                                    NaP22        4.8         KDR22        1875 \
                                    KA22          40         K222           2  \
                                    KM22         150         CaL22          2  \
                                    CaH22         20         KCd22         90  \
                                    AR22           5         KAHPd22        2 


// apdend3 Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend3  apdend2  0  0  50  6.4    Ca_d22 -1.03450719E16    NaF22        250  \
                                    NaP22          0.64      KDR22       125  \
                                    KA22          40         K222          2  \
                                    KM22         150         CaL22         2  \
                                    CaH22         20         KCd22        90  \
                                    AR22           5         KAHPd22       2  

// apdend4aR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend4aR  apdend3 25 0 43.3 4.00   Ca_d22 -1.65522596E16    NaF22       250  \
                                    NaP22       0.64         KDR22       125  \
                                    KA22          40         K222          2  \
                                    KM22         150         CaL22         2  \
                                    CaH22         20         KCd22        90  \
                                    AR22           5         KAHPd22       2 

// apdend4bR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend4bR  apdend4aR 25 0 43.3 4.00 Ca_d22 -1.65522886E16    NaF22   250  \
                                    NaP22       0.64         KDR22   125  \
                                    KA22          40         K222     2  \
                                    KM22         150         CaL22    2  \
                                    CaH22         20         KCd22   90  \
                                    AR22           5         KAHPd22  2 

// apdend5aRRR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5aRRR  apdend4bR 6.4 11.2 48.3 1.6 Ca_d22 -4.1380253E16  NaF22  250 \
                                       NaP22       0.64      KDR22    125 \
                                       KA22        40        K222      2  \
                                       KM22       150        CaL22     2  \
                                       CaH22       20        KCd22     90 \
                                       AR22        5         KAHPd22   2 

// apdend5bRRR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5bRRR  apdend5aRRR 6.4 11.2 48.3 1.6 Ca_d22 -4.1380215E16  NaF22  250 \
                                       NaP22        0.64        KDR22   125 \
                                       KA22          40         K222     2  \
                                       KM22         150         CaL22    2  \
                                       CaH22         20         KCd22   90  \
                                       AR22           5         KAHPd22  2

// apdend5cRRR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5cRRR  apdend5bRRR 6.4 11.2 48.3  1.6 Ca_d22 -4.1379334E16  NaF22  250 \
                                         NaP22          0.64      KDR22  125 \
                                         KA22          40         K222    2  \
                                         KM22         150         CaL22   2  \
                                         CaH22         20         KCd22   90 \
                                         AR22           5         KAHPd22  2

// apdend5aRR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5aRR  apdend4bR 2.2 -3.8 49.8 1.6   Ca_d22 -4.1380253E16  NaF22   250 \
                                       NaP22          0.64      KDR22   125 \
                                       KA22          40         K222     2  \
                                       KM22         150         CaL22    2  \
                                       CaH22         20         KCd22    90 \
                                       AR22           5         KAHPd22  2

// apdend5bRR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5bRR  apdend5aRR 2.2 -3.8 49.8 1.6   Ca_d22 -4.1380215E16 NaF22  250 \
                                       NaP22        0.64        KDR22  125 \
                                       KA22          40         K222     2 \
                                       KM22         150         CaL22    2 \
                                       CaH22         20         KCd22   90 \
                                       AR22           5         KAHPd22  2

// apdend5cRR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5cRR  apdend5bRR 2.2 -3.8 49.8  1.6   Ca_d22 -4.1379334E16  NaF22  250 \
                                         NaP22          0.64      KDR22  125 \
                                         KA22          40         K222    2  \
                                         KM22         150         CaL22   2  \
                                         CaH22         20         KCd22   90 \
                                         AR22           5         KAHPd22  2

// apdend5aRLL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5aRLL  apdend4bR -11.2 -6.4 48.3 1.6 Ca_d22 -4.1380253E16  NaF22  250 \
                                          NaP22        0.64      KDR22  125 \
                                          KA22         40        K222    2  \
                                          KM22         150       CaL22   2  \
                                          CaH22        20        KCd22  90  \
                                          AR22         5         KAHPd22  2

// apdend5bRLL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5bRLL  apdend5aRLL -11.2 -6.4 48.3 1.6 Ca_d22 -4.1380215E16  NaF22   250 \
                                             NaP22        0.64     KDR22   125 \
                                             KA22          40      K222     2  \
                                             KM22         150      CaL22    2  \
                                             CaH22         20      KCd22   90  \
                                             AR22           5      KAHPd22  2

// apdend5cRLL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5cRLL  apdend5bRLL -11.2 -6.4 48.3 1.6 Ca_d22 -4.1379334E16  NaF22  250 \
                                             NaP22      0.64      KDR22   125 \
                                             KA22        40       K222     2  \
                                             KM22        150      CaL22    2  \
                                             CaH22       20       KCd22    90 \
                                              AR22        5       KAHPd22  2

// apdend5aRL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5aRL  apdend4bR -3.8 2.2 49.8 1.6  Ca_d22 -4.1380253E16  NaF22   250 \
                                       NaP22          0.64     KDR22   125 \
                                       KA22          40        K222     2  \
                                       KM22         150        CaL22    2  \
                                       CaH22         20        KCd22    90 \
                                       AR22           5        KAHPd22  2

// apdend5bRL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5bRL  apdend5aRL -3.8 2.2 49.8 1.6  Ca_d22 -4.1380215E16  NaF22   250 \
                                       NaP22        0.64        KDR22   125 \
                                       KA22          40         K222     2  \
                                       KM22         150         CaL22    2  \
                                       CaH22         20         KCd22    90 \
                                       AR22           5         KAHPd22   2

// apdend5cRL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5cRL  apdend5bRL -3.8 2.2 49.8 1.6  Ca_d22 -4.1379334E16  NaF22   250 \
                                         NaP22      0.64    KDR22   125 \
                                         KA22        40     K222     2 \
                                         KM22       150     CaL22    2 \
                                         CaH22       20     KCd22   90 \
                                         AR22         5     KAHPd22  2

// apdend4aL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend4aL  apdend3 -25 0 43.3 4.00     Ca_d22 -1.65523176E16    NaF22   250 \
                                       NaP22          0.64      KDR22   125 \
                                       KA22          40         K222     2  \
                                       KM22         150         CaL22    2  \
                                       CaH22         20         KCd22   90  \
                                       AR22           5         KAHPd22  2

// apdend4bL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend4bL  apdend4aL -25 0 43.3 4.00   Ca_d22 -1.65522886E16    NaF22   250  \
                                       NaP22       0.64         KDR22   125  \
                                       KA22          40         K222     2  \
                                       KM22         150         CaL22    2  \
                                       CaH22         20         KCd22   90  \
                                       AR22           5         KAHPd22  2

// apdend5aLLL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5aLLL  apdend4bL -6.4 11.2 48.3 1.6 Ca_d22 -4.1380253E16     NaF22   250   \
                                          NaP22          0.64      KDR22   125   \
                                          KA22          40         K222     2    \
                                          KM22         150         CaL22    2    \
                                          CaH22         20         KCd22    90   \
                                          AR22           5         KAHPd22   2

// apdend5bLLL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5bLLL  apdend5aLLL -6.4 11.2 48.3 1.6 Ca_d22 -4.1380215E16   NaF22     250   \
                                            NaP22        0.64        KDR22   125   \
                                            KA22          40         K222     2    \
                                            KM22         150         CaL22    2    \
                                            CaH22         20         KCd22    90   \
                                            AR22           5         KAHPd22  2

// apdend5cLLL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5cLLL  apdend5bLLL -6.4 11.2 48.3 1.6 Ca_d22 -4.1379334E16     NaF22   250  \
                                            NaP22          0.64      KDR22   125  \
                                            KA22          40         K222     2   \
                                            KM22         150         CaL22    2   \
                                            CaH22         20         KCd22    90  \
                                            AR22           5         KAHPd22   2

// apdend5aLL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5aLL  apdend4bL -2.2 -3.8 49.8 1.6  Ca_d22 -4.1380253E16     NaF22    250 \
                                          NaP22          0.64      KDR22    125 \
                                          KA22          40         K222      2  \
                                          KM22         150         CaL22     2  \
                                          CaH22         20         KCd22     90 \
                                          AR22           5         KAHPd22   2

// apdend5bLL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5bLL  apdend5aLL -2.2 -3.8 49.8 1.6 Ca_d22 -4.1380215E16   NaF22    250  \
                                          NaP22        0.64        KDR22  125  \
                                          KA22          40         K222    2   \
                                          KM22         150         CaL22   2   \
                                          CaH22         20         KCd22   90  \
                                          AR22           5         KAHPd22  2

// apdend5cLL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5cLL  apdend5bLL -2.2 -3.8 49.8 1.6 Ca_d22 -4.1379334E16     NaF22   250 \
                                          NaP22          0.64      KDR22   125 \
                                          KA22          40         K222     2  \
                                          KM22         150         CaL22    2  \
                                          CaH22         20         KCd22    90 \
                                          AR22           5         KAHPd22  2

// apdend5aLRR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5aLRR  apdend4bL 11.2 -6.4 48.3 1.6 Ca_d22 -4.1380253E16     NaF22   250 \
                                          NaP22          0.64      KDR22   125 \
                                          KA22          40         K222     2  \
                                          KM22         150         CaL22    2  \
                                          CaH22         20         KCd22    90 \
                                          AR22           5         KAHPd22  2

// apdend5bLRR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5bLRR  apdend5aLRR 11.2 -6.4 48.3 1.6 Ca_d22 -4.1380215E16   NaF22    250 \
                                            NaP22        0.64        KDR22  125 \
                                            KA22          40         K222    2  \
                                            KM22         150         CaL22   2  \
                                            CaH22         20         KCd22   90 \
                                            AR22           5         KAHPd22  2

// apdend5cLRR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5cLRR  apdend5bLRR 11.2 -6.4 48.3 1.6 Ca_d22 -4.1379334E16     NaF22   250 \
                                            NaP22          0.64      KDR22   125 \
                                            KA22          40         K222     2  \
                                            KM22         150         CaL22    2  \
                                            CaH22         20         KCd22    90 \
                                            AR22           5         KAHPd22  2

// apdend5aLR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5aLR  apdend4bL 3.8 2.2 49.8 1.6  Ca_d22 -4.1380253E16     NaF22   250 \
                                        NaP22          0.64      KDR22   125 \
                                        KA22          40         K222     2  \
                                        KM22         150         CaL22    2  \
                                        CaH22         20         KCd22    90 \
                                        AR22           5         KAHPd22  2

// apdend5bLR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5bLR  apdend5aLR 3.8 2.2 49.8 1.6 Ca_d22 -4.1380215E16   NaF22    250  \
                                        NaP22        0.64        KDR22  125  \
                                        KA22          40         K222    2   \
                                        KM22         150         CaL22   2   \
                                        CaH22         20         KCd22   90  \
                                        AR22           5         KAHPd22  2

// apdend5cLR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5cLR  apdend5bLR 3.8 2.2 49.8 1.6  Ca_d22 -4.1379334E16     NaF22      250 \
                                         NaP22          0.64      KDR22      125 \
                                         KA22          40         K222        2  \
                                         KM22         150         CaL22       2  \
                                         CaH22         20         KCd22      90  \
                                         AR22           5         KAHPd22    2

//APICAL OBLIQUE DENDRITE COMPARTMENTS ***************************************
// apobdistRa Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobdistRa  apdend1  35.4  35.4  0  1.0  Ca_d22 -6.6208454E16     NaF22    1875 \
                                         NaP22         4.8        KDR22    1875 \
                                         KA22          40         K222      2   \
                                         KM22         150         CaL22     2   \
                                         CaH22         20         KCd22     90  \
                                         AR22          5         KAHPd22    2

// apobdistRb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobdistRb  apobdistRa 35.4  35.4  0  1.0 Ca_d22 -6.6208454E16     NaF22   250 \
                                          NaP22          0.64      KDR22   125 \
                                          KA22          40         K222     2  \
                                          KM22          150        CaL22    2  \
                                          CaH22         20         KCd22   90  \
                                          AR22          5         KAHPd22   2

// apobdistRc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobdistRc  apobdistRb  35.4  35.4  0 1.0  Ca_d22 -6.6208454E16  NaF22   250 \
                                           NaP22        0.64    KDR22    125 \
                                           KA22          40     K222      2  \
                                           KM22         150     CaL22     2  \
                                           CaH22         20     KCd22    90  \
                                           AR22          5      KAHPd22   9

// apobproxRa Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobproxRa  apdend1  35.4  -35.4  0  1.0  Ca_d22 -6.6208454E16     NaF22    1875 \
                                          NaP22         4.8        KDR22    1875 \
                                          KA22          40         K222      2   \
                                          KM22         150         CaL22     2   \
                                          CaH22         20         KCd22     90  \
                                          AR22          5         KAHPd22     9 

// apobproxRb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobproxRb  apobproxRa  35.4  -35.4  0  1.0  Ca_d22 -6.6208454E16     NaF22   250 \
                                             NaP22          0.64      KDR22   125 \
                                             KA22          40         K222     2  \
                                             KM22          150        CaL22    2  \
                                             CaH22         20         KCd22    90 \
                                             AR22          5         KAHPd22   2

// apobproxRc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobproxRc  apobproxRb  35.4  -35.4  0  1.0   Ca_d22 -6.6208454E16  NaF22 250   \
                                              NaP22        0.64    KDR22   125  \
                                              KA22          40     K222    2    \
                                              KM22         150     CaL22   2    \
                                              CaH22         20     KCd22  90    \
                                              AR22          5      KAHPd22 2

// apobdistLa Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobdistLa  apdend1  -35.4  35.4  0  1.0  Ca_d22 -6.6208454E16     NaF22    1875  \
                                          NaP22         4.8        KDR22    1875  \
                                          KA22          40         K222      2    \
                                          KM22         150         CaL22     2    \
                                          CaH22         20         KCd22     90   \
                                          AR22          5         KAHPd22     2

// apobdistLb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobdistLb  apobdistLa  -35.4  35.4  0  1.0  Ca_d22 -6.6208454E16     NaF22    250 \
                                             NaP22          0.64      KDR22    125 \
                                             KA22          40         K222      2  \
                                             KM22          150        CaL22     2  \
                                             CaH22         20         KCd22     90 \
                                             AR22          5         KAHPd22    2

// apobdistLc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobdistLc  apobdistLb  -35.4  35.4  0  1.0  Ca_d22 -6.6208454E16  NaF22   250  \
                                             NaP22        0.64    KDR22    125  \
                                             KA22          40     K222      2   \
                                             KM22         150     CaL22     2   \
                                             CaH22         20     KCd22    90   \
                                             AR22          5      KAHPd22   2

// apobproxLa Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobproxLa  apdend1  -35.4  -35.4  0  1.0  Ca_d22 -6.6208454E16     NaF22        1875   \
                                           NaP22         4.8        KDR22        1875   \
                                           KA22          40         K222           2    \
                                           KM22         150         CaL22          2    \
                                           CaH22         20         KCd22         90    \
                                           AR22          5         KAHPd22         2

// apobproxLb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobproxLb  apobproxLa  -35.4  -35.4  0  1.0 Ca_d22 -6.6208454E16  NaF22  250 \
                                               NaP22     0.64      KDR22  125 \
                                               KA22          40    K222    2  \
                                               KM22          150   CaL22   2  \
                                               CaH22         20    KCd22   90 \
                                               AR22          5     KAHPd22  2

// apobproxLc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobproxLc  apobproxLb  -35.4  -35.4  0  1.0  Ca_d22 -6.6208454E16  NaF22  250 \
                                              NaP22        0.64    KDR22   125 \
                                              KA22          40     K222     2  \
                                              KM22         150     CaL22    2  \
                                              CaH22         20     KCd22   90  \
                                              AR22          5      KAHPd22  2

//BASAL DENDRITE COMPARTMENTS ************************************************
// basalLdeepa Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalLdeepa  soma  -9.4  -16.2  -46.4  1.0  Ca_d22  -6.620845E16     NaF22    1875  \
                                            NaP22         4.8        KDR22    1875  \
                                            KA22          40         K222       2   \
                                            KM22         150         CaL22      2   \
                                            CaH22         20         KCd22     90   \
                                            AR22          5          KAHPd22    2

// basalLdeepb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalLdeepb  basalLdeepa -9.4  -16.2 -46.4  1.0  Ca_d22 -6.6208467E16     NaF22   250  \
                                                 NaP22        0.64        KDR22   125  \
                                                 KA22          40         K222     2   \
                                                 KM22         150         CaL22    2   \
                                                 CaH22         20         KCd22    90  \
                                                 AR22          5          KAHPd22   2

// basalLdeepc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalLdeepc  basalLdeepb -9.4  -16.2 -46.4 1.0  Ca_d22 -6.6207608E16     NaF22      250   \
                                                NaP22         0.64       KDR22       125  \
                                                KA22          40         K222         2   \
                                                KM22          150        CaL22        2   \
                                                CaH22         20         KCd22       90   \
                                                AR22          5         KAHPd22       2

// basalLmiddeepa Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalLmiddeepa  soma  -18.3  31.7  -34.1  1.0  Ca_d22  -6.620845E16     NaF22    1875  \
                                               NaP22         4.8        KDR22    1875  \
                                               KA22          40         K222       2   \
                                               KM22         150         CaL22      2   \
                                               CaH22         20         KCd22     90   \
                                               AR22          5          KAHPd22    2

// basalLmiddeepb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalLmiddeepb  basalLmiddeepa -18.3  31.7 -34.1  1.0 Ca_d22 -6.6208467E16  NaF22 250 \
                                                      NaP22    0.64     KDR22    125  \
                                                      KA22     40       K222      2   \
                                                      KM22     150      CaL22     2   \
                                                      CaH22    20       KCd22     90  \
                                                      AR22     5        KAHPd22   2

// basalLmiddeepc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalLmiddeepc  basalLmiddeepb -18.3  31.7 -34.1 1.0 Ca_d22 -6.6207608E16  NaF22  250 \
                                                     NaP22     0.64       KDR22   125 \
                                                     KA22      40         K222    2   \
                                                     KM22      150        CaL22   2   \
                                                     CaH22     20         KCd22   90  \
                                                     AR22      5         KAHPd22  2

// basalLmidsupera Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalLmidsupera  soma  -40.2  -23.2  -18.7  1.0  Ca_d22  -6.620845E16     NaF22    1875  \
                                                 NaP22         4.8        KDR22    1875  \
                                                 KA22          40         K222       2   \
                                                 KM22         150         CaL22      2   \
                                                 CaH22         20         KCd22     90   \
                                                 AR22          5          KAHPd22    2

// basalLmidsuperb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalLmidsuperb  basalLmidsupera -40.2  -23.2 -18.7  1.0  Ca_d22 -6.6208467E16  NaF22  250 \
                                                          NaP22     0.64        KDR22  125 \
                                                          KA22       40         K222    2  \
                                                          KM22      150         CaL22   2  \
                                                          CaH22     20         KCd22    90 \
                                                          AR22      5          KAHPd22  2

// basalLmidsuperc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalLmidsuperc  basalLmidsuperb -40.2  -23.2 -18.7 1.0  Ca_d22 -6.6207608E16  NaF22  250 \
                                                         NaP22     0.64      KDR22   125  \
                                                         KA22      40        K222    2    \
                                                         KM22      150       CaL22   2    \
                                                         CaH22     20        KCd22   90   \
                                                         AR22      5         KAHPd22  2

// basalLsupera Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalLsupera  soma  -42.6  24.6  -8.7 1.0   Ca_d22  -6.620845E16     NaF22    1875  \
                                            NaP22         4.8        KDR22    1875  \
                                            KA22          40         K222       2   \
                                            KM22         150         CaL22      2   \
                                            CaH22         20         KCd22     90   \
                                            AR22          5          KAHPd22    2

// basalLsuperb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalLsuperb  basalLsupera -42.6  24.6 -8.7  1.0  Ca_d22 -6.6208467E16     NaF22       250  \
                                                  NaP22        0.64        KDR22       125  \
                                                  KA22          40         K222         2   \
                                                  KM22         150         CaL22        2   \
                                                  CaH22         20         KCd22       90   \
                                                  AR22          5          KAHPd22      2

// basalLsuperc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalLsuperc  basalLsuperb -42.6  24.6 -8.7 1.0   Ca_d22 -6.6207608E16     NaF22      250   \
                                                  NaP22         0.64       KDR22       125  \
                                                  KA22          40         K222         2   \
                                                  KM22          150        CaL22        2   \
                                                  CaH22         20         KCd22       90   \
                                                  AR22          5         KAHPd22       2

// basalRdeepa Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalRdeepa  soma   9.4  -16.2   -46.4  1.0  Ca_d22  -6.620845E16     NaF22    1875  \
                                             NaP22         4.8        KDR22    1875  \
                                             KA22          40         K222       2   \
                                             KM22         150         CaL22      2   \
                                             CaH22         20         KCd22     90   \
                                             AR22          5          KAHPd22    2

// basalRdeepb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalRdeepb  basalRdeepa  9.4  -16.2  -46.4  1.0  Ca_d22 -6.6208467E16     NaF22   250  \
                                                  NaP22        0.64        KDR22   125  \
                                                  KA22          40         K222     2   \
                                                  KM22         150         CaL22    2   \
                                                  CaH22         20         KCd22    90  \
                                                  AR22          5          KAHPd22   2

// basalRdeepc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalRdeepc  basalRdeepb  9.4  -16.2  -46.4 1.0  Ca_d22 -6.6207608E16     NaF22      250   \
                                                 NaP22         0.64       KDR22       125  \
                                                 KA22          40         K222         2   \
                                                 KM22          150        CaL22        2   \
                                                 CaH22         20         KCd22       90   \
                                                 AR22          5         KAHPd22       2

// basalRmiddeepa Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalRmiddeepa  soma   18.3  31.7  -34.1  1.0  Ca_d22  -6.620845E16     NaF22    1875  \
                                               NaP22         4.8        KDR22    1875  \
                                               KA22          40         K222       2   \
                                               KM22         150         CaL22      2   \
                                               CaH22         20         KCd22     90   \
                                               AR22          5          KAHPd22    2

// basalRmiddeepb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalRmiddeepb  basalRmiddeepa  18.3  31.7 -34.1  1.0  Ca_d22 -6.6208467E16   NaF22   250  \
                                                       NaP22       0.64        KDR22  125  \
                                                       KA22         40         K222    2   \
                                                       KM22         150        CaL22   2   \
                                                       CaH22         20        KCd22   90  \
                                                       AR22          5         KAHPd22  2

// basalRmiddeepc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalRmiddeepc  basalRmiddeepb  18.3  31.7 -34.1 1.0  Ca_d22 -6.6207608E16  NaF22  250 \
                                                      NaP22      0.64      KDR22   125 \
                                                      KA22        40       K222    2   \
                                                      KM22       150       CaL22   2   \
                                                      CaH22      20        KCd22   90  \
                                                      AR22       5        KAHPd22   2

// basalRmidsupera Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalRmidsupera  soma  40.2  -23.2  -18.7  1.0  Ca_d22  -6.620845E16   NaF22  1875   \
                                              NaP22         4.8        KDR22    1875 \
                                              KA22          40         K222       2  \
                                              KM22         150         CaL22      2  \
                                              CaH22         20         KCd22     90  \
                                              AR22          5          KAHPd22    2

// basalRmidsuperb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalRmidsuperb  basalRmidsupera  40.2  -23.2 -18.7  1.0  Ca_d22 -6.6208467E16  NaF22  250 \
                                                          NaP22     0.64      KDR22    125 \
                                                          KA22      40        K222      2  \
                                                          KM22      150       CaL22     2  \
                                                          CaH22     20        KCd22     90 \
                                                          AR22       5        KAHPd22    2

// basalRmidsuperc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalRmidsuperc  basalRmidsuperb  40.2  -23.2 -18.7 1.0  Ca_d22 -6.6207608E16  NaF22  250 \
                                                         NaP22         0.64    KDR22  125 \
                                                         KA22          40      K222    2  \
                                                         KM22          150     CaL22   2  \
                                                         CaH22         20      KCd22   90 \
                                                         AR22          5      KAHPd22   2

// basalRsupera Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalRsupera  soma  42.6  24.6 -8.7 1.0   Ca_d22  -6.620845E16     NaF22    1875  \
                                          NaP22         4.8        KDR22    1875  \
                                          KA22          40         K222       2   \
                                          KM22         150         CaL22      2   \
                                          CaH22         20         KCd22     90   \
                                          AR22          5          KAHPd22    2

// basalRsuperb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalRsuperb  basalRsupera  42.6  24.6 -8.7  1.0  Ca_d22 -6.6208467E16     NaF22       250 \
                                                  NaP22        0.64        KDR22       125 \
                                                  KA22          40         K222         2  \
                                                  KM22         150         CaL22        2  \
                                                  CaH22         20         KCd22       90  \
                                                  AR22          5          KAHPd22      2

// basalRsuperc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalRsuperc  basalRsuperb  42.6  24.6 -8.7 1.0  Ca_d22 -6.6207608E16     NaF22      250   \
                                                 NaP22         0.64       KDR22       125  \
                                                 KA22          40         K222         2   \
                                                 KM22          150        CaL22        2   \
                                                 CaH22         20         KCd22       90   \
                                                 AR22          5         KAHPd22       2

//		Specifying constants for axonal compartment RMCM=0.0024 (0.0009)
*set_compt_param	RM	0.10   //(0.1)
*set_compt_param	RA	1.00   //(1.00)
*set_compt_param	CM	0.009  //(0.009)(0.024)
//*set_compt_param     EREST_ACT	-0.07
//*set_compt_param     ELEAK	        -0.07

//AXONAL COMPARTMENTS ***************************************
// axona Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
// Differs from Traub et al., in that axon is vertical
axona  soma  0  0 -25  1.8      NaF22       4000   \
                                NaP22          0.0       KDR22       4000   \
                                KA22          20         K222           1   \
                                KM22           0         CaL22          0   \
                                CaH22          0   \
                                AR22           0  

// axonb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
// Differs from Traub et al., in that axon is vertical
axonb  axona  0  0 -50  1.4     NaF22       4000   \
                                NaP22          0.0       KDR22       4000   \
                                KA22          20         K222           1   \
                                KM22           0         CaL22          0   \
                                CaH22          0   \
                                AR22           0  


// axonLa Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
// Differs from Traub et al., in that axon is vertical
axonLa  axonb  -8.7  0 -49.2  1.0     NaF22       4000   \
                                      NaP22          0.0       KDR22       4000   \
                                      KA22          20         K222           1   \
                                      KM22           0         CaL22          0   \
                                      CaH22          0   \
                                      AR22           0  

// axonLb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
// Differs from Traub et al., in that axon is vertical
axonLb  axonLa  -8.7  0 -49.2  1.0     NaF22       4000   \
                                       NaP22          0.0       KDR22       4000   \
                                       KA22          20         K222           1   \
                                       KM22           0         CaL22          0   \
                                       CaH22          0   \
                                       AR22           0 

// axonRa Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
// Differs from Traub et al., in that axon is vertical
axonRa  axonb   8.7  0 -49.2  1.0    NaF22       4000   \
                                     NaP22          0.0       KDR22       4000   \
                                     KA22          20         K222           1   \
                                     KM22           0         CaL22          0   \
                                     CaH22          0   \
                                     AR22           0 

// axonRb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
// Differs from Traub et al., in that axon is vertical
axonRb  axonRa   8.7  0 -49.2  1.0   NaF22       4000   \
                                     NaP22          0.0       KDR22       4000   \
                                     KA22          20         K222           1   \
                                     KM22           0         CaL22          0   \
                                     CaH22          0   \
                                     AR22           0    

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