A multilayer cortical model to study seizure propagation across microdomains (Basu et al. 2015)

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Accession:206238
A realistic neural network was used to simulate a region of neocortex to obtain extracellular LFPs from ‘virtual micro-electrodes’ and produce test data for comparison with multisite microelectrode recordings. A model was implemented in the GENESIS neurosimulator. A simulated region of cortex was represented by layers 2/3, 5/6 (interneurons and pyramidal cells) and layer 4 stelate cells, spaced at 25 µm in each horizontal direction. Pyramidal cells received AMPA and NMDA inputs from neighboring cells at the basal and apical dendrites. The LFP data was generated by simulating 16-site electrode array with the help of ‘efield’ objects arranged at the predetermined positions with respect to the surface of the simulated network. The LFP for the model is derived from a weighted average of the current sources summed over all cellular compartments. Cell models were taken from from Traub et al. (2005) J Neurophysiol 93(4):2194-232.
References:
1 . Basu I, Kudela P, Korzeniewska A, Franaszczuk PJ, Anderson WS (2015) A study of the dynamics of seizure propagation across micro domains in the vicinity of the seizure onset zone. J Neural Eng 12:046016 [PubMed]
2 . Basu I, Kudela P, Anderson WS (2014) Determination of seizure propagation across microdomains using spectral measures of causality. Conf Proc IEEE Eng Med Biol Soc 2014:6349-52 [PubMed]
Model Information (Click on a link to find other models with that property)
Model Type: Realistic Network;
Brain Region(s)/Organism: Neocortex;
Cell Type(s): Neocortex U1 L2/6 pyramidal intratelencephalic GLU cell; Neocortex U1 L5B pyramidal pyramidal tract GLU cell; Thalamus reticular nucleus GABA cell; Neocortex spiking low threshold (LTS) neuron; Neocortex spiking regular (RS) neuron; Neocortex layer 2-3 interneuron; Neocortex layer 5 interneuron;
Channel(s): I Na,p; I Na,t; I K; I A; I M; I h; I K,Ca; I A, slow; I L high threshold; I T low threshold; I Calcium;
Gap Junctions: Gap junctions;
Receptor(s): AMPA; GabaA; NMDA;
Gene(s):
Transmitter(s): Glutamate; Gaba; Amino Acids;
Simulation Environment: GENESIS;
Model Concept(s): Activity Patterns; Epilepsy;
Implementer(s): Anderson, WS ; Kudela, Pawel ;
Search NeuronDB for information about:  Thalamus reticular nucleus GABA cell; Neocortex U1 L5B pyramidal pyramidal tract GLU cell; Neocortex U1 L2/6 pyramidal intratelencephalic GLU cell; GabaA; AMPA; NMDA; I Na,p; I Na,t; I L high threshold; I T low threshold; I A; I K; I M; I h; I K,Ca; I Calcium; I A, slow; Amino Acids; Gaba; Glutamate;
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BasuEtAl2015
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ModelDescription.pdf
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P6RSd_P6RSc.g
P6RSd_P6RSd.g
P6RSd_P6RSd_Gap.g
P6RSd_raninput.g
P6RSd_ST4RS.g
P6RSd_synapsedefs.g
P6RSd_TCR.g
P6RSdcell3Dpk.p
P6RSdchanpk.g
P6RSdprotodefs.g
P6RSsyncond.g
pgenesis_command
protodefs.g
protospikeB23FS.g
protospikeB5FS.g
protospikeC23FS.g
protospikeC5FS.g
protospikeI23LTS.g
protospikeI5LTS.g
protospikenRT.g
protospikeP23FRBa.g
protospikeP23RSa.g
protospikeP23RSb.g
protospikeP23RSc.g
protospikeP23RSd.g
protospikeP5IBa.g
protospikeP5IBb.g
protospikeP5IBc.g
protospikeP5IBd.g
protospikeP5RSa.g
protospikeP6RSa.g
protospikeP6RSb.g
protospikeP6RSc.g
protospikeP6RSd.g
protospikeST4RS.g
protospikeTCR.g
randominputdefs.g
spikedefs.g
ST4RS.g
ST4RS_B23FS.g
ST4RS_B5FS.g
ST4RS_C23FS.g
ST4RS_C5FS.g
ST4RS_I23LTS.g
ST4RS_I5LTS.g
ST4RS_P23FRBa.g
ST4RS_P23RSa.g
ST4RS_P23RSb.g
ST4RS_P23RSc.g
ST4RS_P23RSd.g
ST4RS_P5IBa.g
ST4RS_P5IBb.g
ST4RS_P5IBc.g
ST4RS_P5IBd.g
ST4RS_P5RSa.g
ST4RS_P6RSa.g
ST4RS_P6RSb.g
ST4RS_P6RSc.g
ST4RS_P6RSd.g
ST4RS_raninput.g
ST4RS_ST4RS.g
ST4RS_ST4RS_Gap.g
ST4RS_synapsedefs.g
ST4RScell3Dpk.p
ST4RSchanpk.g
ST4RSprotodefs.g
ST4RSsyncond.g
synapticdelays.g *
synapticprobsTraub.g
synchansB23FS.g *
synchansB5FS.g *
synchansC23FS.g *
synchansC5FS.g *
synchansI23LTS.g *
synchansI5LTS.g *
synchansnRT.g *
synchansP23FRBa.g *
synchansP23RSa.g *
synchansP23RSb.g *
synchansP23RSc.g *
synchansP23RSd.g *
synchansP5IBa.g *
synchansP5IBb.g *
synchansP5IBc.g *
synchansP5IBd.g *
synchansP5RSa.g *
synchansP6RSa.g *
synchansP6RSb.g *
synchansP6RSc.g *
synchansP6RSd.g *
synchansSPIKEs.g *
synchansSPIKEs_base.g
synchansST4RS.g
synchansTCR.g *
syncond.g
syncond2.g
TCR.g
TCR_B23FS.g
TCR_B5FS.g
TCR_C23FS.g
TCR_C5FS.g
TCR_nRT.g
TCR_P23FRBa.g
TCR_P23RSa.g
TCR_P23RSb.g
TCR_P23RSc.g
TCR_P23RSd.g
TCR_P5IBa.g
TCR_P5IBb.g
TCR_P5IBc.g
TCR_P5IBd.g
TCR_P5RSa.g
TCR_P6RSa.g
TCR_P6RSb.g
TCR_P6RSc.g
TCR_P6RSd.g
TCR_raninput.g
TCR_ST4RS.g
TCR_synapsedefs.g
TCRcellpk.p
TCRchanpk.g
TCRprotodefs.g
TCRsyncond.g
                            
// P5RSacell3D.p - for TraubIB_VP
//	Format of file :
// x,y,z,dia are in microns, all other units are SI (Meter Kilogram Sec Amp)
// In polar mode 'r' is in microns, theta and phi in degrees 
// Control line options start with a '*'
// The format for each compartment parameter line is :
//name	parent	r	theta	phi	d	ch	dens ...
//in polar mode, and in cartesian mode :
//name	parent	x	y	z	d	ch	dens ...
// For channels, "dens" =  maximum conductance per unit area of compartment
// For spike elements, "dens" is the spike threshold
//		Coordinate mode
*relative
*cartesian
*asymmetric

//		Specifying constants
   *set_compt_param	RM	5.0   // 5.0
   *set_compt_param	RA	2.50  // 2.50
   *set_compt_param	CM	0.009 // 0.009
   *set_compt_param     EREST_ACT	-0.07 // -0.075
   *set_compt_param     ELEAK           -0.0666 // -0.075


//SOMA *************************************************************   
// For the soma, use the leakage potential (-0.07 + 0.0106) for Em
//*set_compt_param     ELEAK	-0.0594
// Actually, after Traub et al. J Neurophys 2003;89:909-921, will maintain
// leakage potential at ELEAK   -0.07
soma  none   0  0  15  16     Ca_s23 -6.1304081E14  NaF23          2000     \
                              NaP23       1.6     KDR23          1700     \
                              KA23        200     K223              5     \
                              KM23         85     CaL23             1     \
                              CaH23        16     KCs23           288     \
                              AR23        1.0     KAHPs23           2.0   

*set_compt_param     RA          2.5
*set_compt_param     CM		 0.018
*set_compt_param     RM		 2.5 

//APICAL DENDRITE COMPARTMENTS ***************************************
// apdend1 Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend1  soma  0  0  75  4      Ca_d23 -1.83912454E16   NaF23       3000   \
                                NaP23        2.4        KDR23       2400   \
                                KA23         160         K223          10   \
                                KM23        272.0       CaL23          2   \
                                CaH23        32         KCd23        576   \
                                AR23          2.0       KAHPd23        4.0   
                               
// apdend2 Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend2  apdend1  0  0  75  3.8     Ca_d23 -1.93591979E16  NaF23      1500  \
                                    NaP23        1.2      KDR23      1500  \
                                    KA23         160        K223        10  \
                                    KM23        272.0      CaL23        2  \
                                    CaH23        32        KCd23      576  \
                                    AR23         2.0      KAHPd23      4.0


// apdend3 Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend3  apdend2  0  0  75  3.6     Ca_d23 -2.04347178E16    NaF23        300  \
                                    NaP23         0.24       KDR23          0  \
                                    KA23          12         K223           10  \
                                    KM23        272.0        CaL23          2  \
                                    CaH23        32          KCd23          18  \
                                    AR23          2.0        KAHPd23        4.0


// apdend4 Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend4  apdend3  0  0  75  3.4   Ca_d23  -2.16367589E16    NaF23         300  \
                                    NaP23         0.24      KDR23           0  \
                                    KA23          12         K223           10  \
                                    KM23        272.0       CaL23           2  \
                                    CaH23         8         KCd23          18  \
                                    AR23          2.0       KAHPd23         4.0

// apdend5 Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5  apdend4  0  0  75  3.2   Ca_d23  -2.29890551E16     NaF23        300  \
                                    NaP23         0.24       KDR23          0  \
                                    KA23          12          K223          10  \
                                    KM23        272.0        CaL23          2  \
                                    CaH23         8          KCd23          18  \
                                    AR23          2.0        KAHPd23        4.0


// apdend6 Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend6  apdend5  0  0  75  3    Ca_d23 -2.45216219E16       NaF23        300  \
                                    NaP23        0.24       KDR23          0  \
                                    KA23          12          K223         10  \
                                    KM23        272.0        CaL23          2  \
                                    CaH23         8          KCd23          18  \
                                    AR23         2.0        KAHPd23        4.0

// apdend7 Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend7  apdend6  0  0  75  2.8   Ca_d23 -2.62732083E16     NaF23        300  \
                                    NaP23         0.24      KDR23          0  \
                                    KA23          12         K223         10  \
                                    KM23        272.0       CaL23          2  \
                                    CaH23         8         KCd23        18  \
                                    AR23          2.0       KAHPd23      4.0 

// apdend8 Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend8  apdend7  0  0  75  2.6  Ca_d23 -2.82942245E16   NaF23        300  \
                                    NaP23        0.24    KDR23          0  \
                                    KA23         12      K223          10  \
                                    KM23       272.0     CaL23          2  \
                                    CaH23        8       KCd23         18  \
                                    AR23         2.0     KAHPd23      4.0

// apdend9 Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend9  apdend8  0  0  75  2.4   Ca_d23 -3.06520735E16  NaF23        300   \
                                    NaP23      0.24      KDR23          0   \
                                    KA23       12         K223         10   \
                                    KM23     272.0       CaL23          2   \
                                    CaH23      8         KCd23          18   \
                                    AR23       2.0       KAHPd23       4.0

// apdend10 Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend10  apdend9  0  0  75  2  Ca_d23 -3.6782491E16     NaF23        300  \
                                    NaP23      0.24      KDR23          0  \
                                    KA23       12         K223          10  \
                                    KM23     272.0       CaL23          2  \
                                    CaH23      8         KCd23          18  \
                                    AR23       2.0       KAHPd23        4.0

// apdend11 Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend11  apdend10  0  0  75  1.6    Ca_d23 -4.5977964E16   NaF23        60  \
                                       NaP23      0.048     KDR23         0  \
                                       KA23       12        K223         10  \
                                       KM23      80         CaL23         2  \
                                       CaH23      8         KCd23       43.2 \
                                       AR23       2.0       KAHPd23       4.0

// apdend12 Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend12  apdend11  0  0  75  1.4    Ca_d23 -5.2546503E16       NaF23        60 \
                                       NaP23         0.048      KDR23         0  \
                                       KA23          12         K223         10  \
                                       KM23          80         CaL23         2  \
                                       CaH23         8          KCd23       43.2 \
                                       AR23          2.0        KAHPd23      4.0

// apdend13 Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend13  apdend12  0  0  75  1.2    Ca_d23 -6.1304147E16   NaF23        60   \
                                       NaP23         0.048  KDR23         0   \
                                       KA23         12      K223         10   \
                                       KM23         80      CaL23         2   \
                                       CaH23         8      KCd23       43.2  \
                                       AR23         2.0    KAHPd23       4.0

// apdend14aR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend14aR  apdend13 11.2 -19.5 55.6 1.1    Ca_d23 -8.3595586E16  NaF23        60  \
                                             NaP23      0.048     KDR23         0  \
                                             KA23      12         K223          10  \
                                             KM23      80         CaL23         2  \
                                             CaH23     21.6       KCd23       43.2 \
                                             AR23       4.0       KAHPd23       4.0

// apdend14bR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend14bR  apdend14aR 11.2 -19.5 55.6 1.1  Ca_d23 -8.3601684E16  NaF23        60  \
                                             NaP23      0.048     KDR23         0  \
                                             KA23       12        K223         10  \
                                             KM23      80         CaL23         2  \
                                             CaH23     4.8        KCd23        43.2 \
                                             AR23       4.0       KAHPd23       4.0

// apdend14cR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend14cR  apdend14bR 11.2 -19.5 55.6 1.1   Ca_d23 -8.3602019E16  NaF23        60  \
                                              NaP23      0.024     KDR23         0  \
                                              KA23       12        K223          10  \
                                              KM23       80        CaL23         2  \
                                              CaH23      4.8       KCd23       43.2 \
                                              AR23       4.0       KAHPd23       4.0

// apdend14dR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend14dR  apdend14cR 11.2 -19.5 55.6 1.1 Ca_d23 -8.3602045E16  NaF23        60  \
                                           NaP23      0.048      KDR23         0  \
                                           KA23       12          K223        10  \
                                           KM23      80          CaL23         2  \
                                           CaH23      4.8        KCd23       43.2 \
                                           AR23       4.0        KAHPd23       4.0

// apdend14aL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend14aL  apdend13 -11.2 19.5 55.6 1.1   Ca_d23 -8.3595586E16   NaF23        60  \
                                             NaP23      0.048     KDR23         0  \
                                             KA23       12         K223         10  \
                                             KM23      80         CaL23         2  \
                                             CaH23     21.6       KCd23       43.2 \
                                             AR23       4.0       KAHPd23      4.0

// apdend14bL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend14bL  apdend14aL -11.2 19.5 55.6 1.1  Ca_d23 -8.3601684E16  NaF23       60   \
                                             NaP23      0.048     KDR23        0   \
                                             KA23       12         K223        10   \
                                             KM23      80         CaL23        2   \
                                             CaH23     4.8       KCd23       43.2 \
                                             AR23       4.0       KAHPd23      4.0

// apdend14cL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend14cL  apdend14bL -11.2 19.5 55.6 1.1  Ca_d23 -8.3602019E16   NaF23        60  \
                                              NaP23      0.048     KDR23         0  \
                                              KA23       12        K223          10 \
                                              KM23      80         CaL23         2  \
                                              CaH23      4.8       KCd23       43.2 \
                                              AR23       4.0       KAHPd23       4.0

// apdend14dL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend14dL  apdend14cL -11.2 19.5 55.6 1.1 Ca_d23 -8.3602045E16  NaF23        60  \
                                           NaP23      0.048      KDR23         0  \
                                           KA23       12          K223         10 \
                                           KM23      80          CaL23         2  \
                                           CaH23      4.8        KCd23       43.2 \
                                           AR23       4.0        KAHPd23       4.0

//APICAL OBLIQUE DENDRITE COMPARTMENTS ***************************************

// apobdistRa Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobdistRa  apdend3  42.4  42.4 0.0 1.24    Ca_d23 -7.4158245E16     NaF23         1500 \
                                             NaP23       1.2         KDR23         1500 \
                                             KA23       160          K223           10  \
                                             KM23      272.0         CaL23           2  \
                                             CaH23      32           KCd23         576  \
                                             AR23        2.0         KAHPd23        4.0

// apobdistRb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobdistRb  apobdistRa  42.4  42.4 0.0 1.24  Ca_d23 -7.4156115E16     NaF23         300  \
                                              NaP23      0.24         KDR23           0  \
                                              KA23       12           K223           10  \
                                              KM23     272.0          CaL23           2  \
                                              CaH23     32            KCd23          18  \
                                              AR23       2.0          KAHPd23        4.0

// apobdistRc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobdistRc  apobdistRb  42.4  42.4 0.0 1.24  Ca_d23 -7.4158245E16     NaF23         300  \
                                              NaP23      0.24         KDR23           0  \
                                              KA23       12           K223           10  \
                                              KM23     272.0          CaL23           2  \
                                              CaH23     32            KCd23           18 \
                                              AR23       2.0          KAHPd23         4.0

// apobdistLa Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobdistLa  apdend3  -42.4  -42.4 0.0 1.24   Ca_d23 -7.4158245E16      NaF23        1500  \
                                               NaP23       1.2         KDR23        1500  \
                                               KA23       160          K223           10  \
                                               KM23      272.0         CaL23           2  \
                                               CaH23      32           KCd23         576  \
                                               AR23        2.0         KAHPd23       4.0

// apobdistLb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobdistLb  apobdistLa  -42.4  -42.4 0.0 1.24 Ca_d23 -7.4156115E16      NaF23         300  \
                                                NaP23      0.24         KDR23           0  \
                                                KA23       12           K223           10  \
                                                KM23     272.0          CaL23           2  \
                                                CaH23     32            KCd23          18  \
                                                AR23       2.0          KAHPd23        4.0

// apobdistLc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobdistLc  apobdistLb  -42.4 -42.4 0.0 1.24  Ca_d23 -7.4158245E16      NaF23         300  \
                                                NaP23      0.24         KDR23           0  \
                                                KA23       12            K223           10  \
                                                KM23     272.0          CaL23           2  \
                                                CaH23     32            KCd23          18  \
                                                AR23       2.0          KAHPd23        4.0

// apobmidRa Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobmidRa  apdend2  42.4  -42.4 0.0  1.24   Ca_d23 -7.4158245E16      NaF23         1500  \
                                              NaP23       1.2         KDR23         1500  \
                                              KA23       160          K223            10  \
                                              KM23      272.0         CaL23           2  \
                                              CaH23      32           KCd23         576  \
                                              AR23        2.0         KAHPd23         4.0

// apobmidRb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobmidRb  apobmidRa  42.4  -42.4 0.0  1.24  Ca_d23 -7.4156252E16      NaF23         300  \
                                               NaP23      0.24         KDR23           0  \
                                               KA23       12            K223           10  \
                                               KM23     272.0          CaL23           2  \
                                               CaH23     32            KCd23           18  \
                                               AR23       2.0          KAHPd23         4.0

// apobmidRc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobmidRc  apobmidRb  42.4  -42.4 0.0  1.24    Ca_d23 -7.4158245E16    NaF23         300  \
                                               NaP23      0.24         KDR23           0  \
                                               KA23       12            K223           10  \
                                               KM23     272.0          CaL23           2  \
                                               CaH23     32            KCd23           18  \
                                               AR23       2.0          KAHPd23         4.0

// apobmidLa Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobmidLa  apdend2  -42.4  42.4 0.0  1.24   Ca_d23 -7.4158245E16      NaF23         1500  \
                                              NaP23       1.2         KDR23         1500  \
                                              KA23       160           K223            10  \
                                              KM23      272.0         CaL23           2  \
                                              CaH23      32           KCd23         576  \
                                              AR23        2.0         KAHPd23         4.0

// apobmidLb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobmidLb  apobmidLa  -42.4  42.4 0.0  1.24  Ca_d23 -7.4156252E16      NaF23           300  \
                                               NaP23      0.24         KDR23           0  \
                                               KA23       12            K223           10  \
                                               KM23     272.0          CaL23           2  \
                                               CaH23     32            KCd23           18  \
                                               AR23       2.0          KAHPd23         4.0

// apobmidLc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobmidLc  apobmidLb  -42.4  42.4 0.0  1.24  Ca_d23  -7.4158245E16     NaF23         300  \
                                               NaP23      0.24         KDR23           0  \
                                               KA23       12            K223           10  \
                                               KM23     272.0          CaL23           2  \
                                               CaH23     32            KCd23          18  \
                                               AR23       2.0          KAHPd23       4.0

// aproxRa Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobproxRa  apdend1  42.4  42.4 0.0  1.24   Ca_d23 -7.4158245E16      NaF23         1500  \
                                              NaP23       1.2         KDR23         1500  \
                                              KA23       160           K223           10  \
                                              KM23      272.0         CaL23           2  \
                                              CaH23      32           KCd23         576  \
                                              AR23        2.0         KAHPd23         4.0

// apobproxRb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobproxRb  apobproxRa  42.4  42.4 0.0  1.24  Ca_d23 -7.4158245E16      NaF23         300  \
                                                NaP23      0.24         KDR23           0  \
                                                KA23       12            K223           10  \
                                                KM23     272.0          CaL23           2  \
                                                CaH23     32            KCd23           18  \
                                                AR23      2.0           KAHPd23         4.0

// apobproxRc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobproxRc  apobproxRb  42.4  42.4 0.0  1.24  Ca_d23 -7.4158245E16      NaF23         300  \
                                                NaP23      0.24         KDR23           0  \
                                                KA23       12            K223          10  \
                                                KM23     272.0          CaL23           2  \
                                                CaH23     32            KCd23           18  \
                                                AR23      2.0          KAHPd23         4.0

// aproxLa Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobproxLa  apdend1  -42.4 -42.4 0.0  1.24   Ca_d23 -7.4158245E16      NaF23         1500  \
                                              NaP23       1.2         KDR23         1500  \
                                              KA23       160           K223           10  \
                                              KM23      272.0         CaL23           2  \
                                              CaH23      32           KCd23         576  \
                                              AR23        2.0         KAHPd23         4.0

// apobproxLb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobproxLb  apobproxLa -42.4 -42.4 0.0  1.24  Ca_d23 -7.4158245E16      NaF23         300  \
                                                NaP23      0.24         KDR23           0  \
                                                KA23       12            K223           10  \
                                                KM23     272.0          CaL23           2  \
                                                CaH23     32            KCd23           18  \
                                                AR23      2.0           KAHPd23         4.0

// apobproxLc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobproxLc  apobproxLb -42.4 -42.4 0.0  1.24  Ca_d23 -7.4158245E16      NaF23         300  \
                                                NaP23      0.24         KDR23           0  \
                                                KA23       12            K223          10  \
                                                KM23     272.0          CaL23           2  \
                                                CaH23     32            KCd23           18  \
                                                AR23      2.0          KAHPd23         4.0

//BASAL DENDRITE COMPARTMENTS ************************************************
// basalLsupera Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalLsupera  soma  -26.8  -46.3  -27.2  1.7  Ca_d23 -5.4091896E16      NaF23      1500  \
                                                NaP23       1.2         KDR23      1500  \
                                                KA23       160           K223        10  \
                                                KM23      272.0         CaL23         2  \
                                                CaH23      32           KCd23       576  \
                                                AR23        2.0         KAHPd23      4.0

// basalLsuperb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalLsuperb  basalLsupera  -26.8  -46.3 -27.2  1.7   Ca_d23 -5.4091896E16      NaF23       300  \
                                                        NaP23       0.24        KDR23         0  \
                                                        KA23        12          K223          10  \
                                                        KM23      272.0         CaL23         2  \
                                                        CaH23      32           KCd23        18  \
                                                        AR23        2.0         KAHPd23       4.0

// basalLsuperc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalLsuperc  basalLsuperb  -26.8  -46.3 -27.2  1.7   Ca_d23 -5.4091896E16      NaF23       300  \
                                                        NaP23       0.24        KDR23         0  \
                                                        KA23        12           K223        10  \
                                                        KM23      272.0         CaL23         2  \
                                                        CaH23      32           KCd23        18  \
                                                        AR23        2.0         KAHPd23       4.0

// basalLmida Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalLmida  soma  -19.3  33.4  -46.0  1.7    Ca_db23 -5.4091896E16      NaF23       1500  \
                                               NaP23       1.2         KDR23       1500  \
                                               KA23       160           K223          10  \
                                               KM23      272.0         CaL23         2  \
                                               CaH23      32           KCdb23       576  \
                                               AR23        2.0         KAHPdb23       4.0

// basalLmidb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalLmidb  basalLmida  -19.3  33.4 -46.0  1.7       Ca_d23 -5.4091896E16      NaF23       300  \
                                                       NaP23       0.24        KDR23         0  \
                                                       KA23        12           K223        10  \
                                                       KM23      272.0         CaL23         2  \
                                                       CaH23      32           KCd23         18  \
                                                       AR23        2.0         KAHPd23       4.0

// basalLmidc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalLmidc  basalLmidb  -19.3  33.4 -46.0  1.7       Ca_d23 -5.4091896E16      NaF23       300  \
                                                       NaP23       0.24        KDR23         0  \
                                                       KA23        12          K223          10  \
                                                       KM23      272.0         CaL23         2  \
                                                       CaH23      32           KCd23         18  \
                                                       AR23        2.0         KAHPd23       4.0

// basalRsupera Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalRsupera  soma  26.8  46.3  -27.2  1.7   Ca_d23 -5.4091896E16      NaF23       1500  \
                                               NaP23       1.2         KDR23       1500  \
                                               KA23       160          K223          10  \
                                               KM23      276.0         CaL23         2  \
                                               CaH23      32           KCd23       576  \
                                               AR23        2.0         KAHPd23       4.0

// basalRsuperb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalRsuperb  basalRsupera  26.8  46.3 -27.2  1.7    Ca_d23 -5.4091896E16      NaF23       300  \
                                                       NaP23       0.24        KDR23         0  \
                                                       KA23        12          K223          10  \
                                                       KM23      272.0         CaL23         2  \
                                                       CaH23      32           KCd23         18  \
                                                       AR23        2.0         KAHPd23       4.0

// basalRsuperc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalRsuperc  basalRsuperb  26.8  46.3 -27.2  1.7    Ca_d23 -5.4091896E16      NaF23       300  \
                                                       NaP23       0.24        KDR23         0  \
                                                       KA23        12           K223         10  \
                                                       KM23      272.0         CaL23         2  \
                                                       CaH23      32           KCd23        18  \
                                                       AR23        2.0         KAHPd23       4.0

// basalRmida Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalRmida  soma  19.3  -33.4  -46.0  1.7    Ca_db23 -5.4091896E16       NaF23       1500  \
                                                NaP23       1.2         KDR23       1500  \
                                                KA23       160           K223         10  \
                                                KM23      272.0         CaL23         2  \
                                                CaH23      32           KCdb23       576  \
                                                AR23        2.0         KAHPdb23       4.0

// basalRmidb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalRmidb  basalRmida  19.3  -33.4 -46.0  1.7       Ca_d23 -5.4091896E16       NaF23       300  \
                                                        NaP23       0.24        KDR23         0  \
                                                        KA23        12           K223         10  \
                                                        KM23      272.0         CaL23         2  \
                                                        CaH23      32           KCd23         18  \
                                                        AR23        2.0         KAHPd23       4.0

// basalRmidc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalRmidc  basalRmidb  19.3  -33.4 -46.0  1.7     Ca_d23 -5.4091896E16       NaF23       300  \
                                                      NaP23       0.24        KDR23         0  \
                                                      KA23        12           K223         10 \
                                                      KM23      272.0         CaL23         2  \
                                                      CaH23      32           KCd23         18 \
                                                      AR23        2.0         KAHPd23       4.0

// basaldeepa Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basaldeepa  soma  0  0  -60.0  1.7       Ca_db23 -5.4091896E16       NaF23       1500  \
                                            NaP23       1.2         KDR23       1500  \
                                            KA23       160          K223         10  \
                                            KM23      272.0         CaL23          2  \
                                            CaH23      32           KCdb23        576  \
                                            AR23       2.0          KAHPdb23       4.0

// basaldeepb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basaldeepb  basaldeepa  0  0 -60.0  1.7           Ca_d23 -5.4091896E16      NaF23       300  \
                                                    NaP23       0.24        KDR23         0  \
                                                    KA23        12          K223         10  \
                                                    KM23      272.0         CaL23         2  \
                                                    CaH23      32           KCd23        18  \
                                                    AR23       2.0          KAHPd23      4.0

// basaldeepc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basaldeepc  basaldeepb  0  0 -60.0  1.7           Ca_d23 -5.4091896E16      NaF23       300  \
                                                    NaP23       0.24        KDR23         0  \
                                                    KA23        12           K223        10  \
                                                    KM23      272.0         CaL23         2  \
                                                    CaH23      32           KCd23        18  \
                                                    AR23        2.0         KAHPd23      4.0


//		Specifying constants for axonal compartment RMCM=0.0014 (0.0009)
*set_compt_param	RM	0.1   // (0.10)
*set_compt_param	RA	1.0   // (1.00)
*set_compt_param	CM	0.009  // (0.009)
//*set_compt_param     EREST_ACT	-0.075
//*set_compt_param     ELEAK	-0.066

//AXONAL COMPARTMENTS ***************************************
// axona Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
// Differs from Traub et al., in that axon is vertical
axona  soma  0  0 -25  1.8      NaF23      4500   \
                                NaP23         0.0     KDR23          4500   \
                                KA23          6       K223              5   \
                                KM23        300       CaL23             0   \
                                CaH23         0   \
                                AR23          0   

// axonb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
// Differs from Traub et al., in that axon is vertical
axonb  axona  0  0 -50  1.4     NaF23      4500   \
                                NaP23         0.0     KDR23          4500   \
                                KA23          6       K223              5   \
                                KM23        300       CaL23             0   \
                                CaH23         0   \
                                AR23          0

// axonLa Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
// Differs from Traub et al., in that axon is vertical
axonLa  axonb  -8.7  0 -49.2  1.0    NaF23      4500   \
                                     NaP23         0.0     KDR23          4500   \
                                     KA23          6       K223              5   \
                                     KM23        300       CaL23             0   \
                                     CaH23         0   \
                                     AR23          0   

// axonLb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
// Differs from Traub et al., in that axon is vertical
axonLb  axonLa  -8.7  0 -49.2  1.0   NaF23      4500   \
                                     NaP23         0.0     KDR23          4500   \
                                     KA23          6       K223              5   \
                                     KM23        300       CaL23             0   \
                                     CaH23         0   \
                                     AR23          0   

// axonRa Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
// Differs from Traub et al., in that axon is vertical
axonRa  axonb   8.7  0 -49.2  1.0    NaF23      4500   \
                                     NaP23         0.0     KDR23          4500   \
                                     KA23          6       K223              5   \
                                     KM23        300       CaL23             0   \
                                     CaH23         0   \
                                     AR23          0  

// axonRb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
// Differs from Traub et al., in that axon is vertical
axonRb  axonRa   8.7  0 -49.2  1.0   NaF23      4500   \
                                     NaP23         0.0     KDR23          4500   \
                                     KA23          6       K223              5   \
                                     KM23        300       CaL23             0   \
                                     CaH23         0   \
                                     AR23          0     


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