// genesis
// Setting the axonal propagation velocity
float CABLE_VEL = 1 // scale factor = 1/(cable velocity) sec/meter
float destlim = {P6RSb_C5FS_destlim}
/*
* Usage :
* volumeconnect source-path destination-path
* [-relative]
* [-sourcemask {box,ellipse} x1 y1 x2 y2]
* [-sourcehole {box,ellipse} x1 y1 x2 y2]
* [-destmask {box,ellipse} x1 y1 x2 y2]
* [-desthole {box,ellipse} x1 y1 x2 y2]
* [-probability p]
*/
echo Making connections from the P6RSb cells to the C5FS cells.
//P6RSb - C5FS AMPA
str s
//Load synapse location array
str locations = "distdendNlongb distdendNlongc distdendNmidb distdendNmidc distdendNshorta distdendNshortb distdendElongb distdendElongc distdendEmidb distdendEmidc distdendEshorta distdendEshortb distdendSlongb distdendSlongc distdendSmidb distdendSmidc distdendSshorta distdendSshortb distdendWlongb distdendWlongc distdendWmidb distdendWmidc distdendWshorta distdendWshortb"
foreach s ({arglist {locations}})
rvolumeconnect /P6RSbnet/P6RSb[]/soma/spk12 \
/C5FSnet/C5FS[]/{s}/Ex_ch16P6RSAMPA@all \
-relative \
-sourcemask box -1 -1 -1 1 1 1 \
-destmask box -{destlim} -{destlim} -1 {destlim} {destlim} 1 \
-probability 0.042*{P6RSb_C5FS_prob}
end
//P6RSb - C5FS NMDA
str s
//Load synapse location array
str locations = "distdendNlongb distdendNlongc distdendNmidb distdendNmidc distdendNshorta distdendNshortb distdendElongb distdendElongc distdendEmidb distdendEmidc distdendEshorta distdendEshortb distdendSlongb distdendSlongc distdendSmidb distdendSmidc distdendSshorta distdendSshortb distdendWlongb distdendWlongc distdendWmidb distdendWmidc distdendWshorta distdendWshortb"
foreach s ({arglist {locations}})
rvolumeconnect /P6RSbnet/P6RSb[]/soma/spk12 \
/C5FSnet/C5FS[]/{s}/Ex_ch16P6RSNMDA@all \
-relative \
-sourcemask box -1 -1 -1 1 1 1 \
-destmask box -{destlim} -{destlim} -1 {destlim} {destlim} 1 \
-probability 0.042*{P6RSb_C5FS_prob}
end
echo Setting weights and delays for P6RSb->C5FS connections.
// assigning delays using the volumedelay function
/*
* Usage :
* volumedelay path
* [-fixed delay]
* [-radial propagation_velocity]
* [-uniform range] (not used here)
* [-gaussian sd max] (not used here)
* [-exp mid max] (not used here)
* [-absoluterandom] (not used here)
*/
rvolumedelay /P6RSbnet/P6RSb[]/soma/spk12 -radial {P6RSb_C5FS_axdelayCV} -add -gaussian {P6RSb_C5FS_axdelaystdev} {P6RSb_C5FS_axdelaymaxdev}
// P6RSb - C5FS AMPA
str s
//Load synapse location array
str locations = "distdendNlongb distdendNlongc distdendNmidb distdendNmidc distdendNshorta distdendNshortb distdendElongb distdendElongc distdendEmidb distdendEmidc distdendEshorta distdendEshortb distdendSlongb distdendSlongc distdendSmidb distdendSmidc distdendSshorta distdendSshortb distdendWlongb distdendWlongc distdendWmidb distdendWmidc distdendWshorta distdendWshortb"
foreach s ({arglist {locations}})
syndelay /C5FSnet/C5FS[]/{s}/Ex_ch16P6RSAMPA {P6RSb_C5FS_syndelay} -add -gaussian {P6RSb_C5FS_syndelaystdev} {P6RSb_C5FS_syndelaymaxdev}
end
// P6RSb - C5FS NMDA
str s
//Load synapse location array
str locations = "distdendNlongb distdendNlongc distdendNmidb distdendNmidc distdendNshorta distdendNshortb distdendElongb distdendElongc distdendEmidb distdendEmidc distdendEshorta distdendEshortb distdendSlongb distdendSlongc distdendSmidb distdendSmidc distdendSshorta distdendSshortb distdendWlongb distdendWlongc distdendWmidb distdendWmidc distdendWshorta distdendWshortb"
foreach s ({arglist {locations}})
syndelay /C5FSnet/C5FS[]/{s}/Ex_ch16P6RSNMDA {P6RSb_C5FS_syndelay} -add -gaussian {P6RSb_C5FS_syndelaystdev} {P6RSb_C5FS_syndelaymaxdev}
end
// assigning weights using the volumeweight function
/*
* Usage :
* volumeweight sourcepath
* [-fixed weight]
* [-decay decay_rate max_weight min_weight]
* [-uniform range]
* [-gaussian sd max]
* [-exponential mid max]
* [-absoluterandom]
*/
rvolumeweight /P6RSbnet/P6RSb[]/soma/spk12 -decay {P6RSdecayrate} {P6RSmaxwgt} {P6RSminwgt}
//volumeweight /P6RSanet/P6RSa[]/soma/spk6 -fixed 0.50
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